Wall clock time and date at job start Tue Mar 31 2020 16:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48507 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47234 * 300.00185 * 3 2 1 6 6 H 1.48497 * 109.47055 * 60.00488 * 3 2 1 7 7 C 1.37877 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99967 * 173.54703 * 7 2 1 9 9 C 1.50705 * 120.00003 * 353.55263 * 7 2 1 10 10 C 1.52998 * 115.55136 * 85.40406 * 9 7 2 11 11 N 1.46506 * 109.46816 * 65.14187 * 10 9 7 12 12 C 1.34775 * 119.99434 * 178.27721 * 11 10 9 13 13 O 1.21581 * 120.00421 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99828 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99945 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47076 * 180.02562 * 15 14 12 17 17 O 1.42894 * 108.89990 * 64.29569 * 16 15 14 18 18 C 1.52981 * 108.81901 * 305.67713 * 16 15 14 19 19 C 1.55103 * 108.66268 * 209.41019 * 18 16 15 20 20 S 1.83840 * 101.19180 * 41.87112 * 19 18 16 21 21 O 1.42100 * 109.61480 * 211.05177 * 20 19 18 22 22 O 1.42100 * 109.77956 * 77.13988 * 20 19 18 23 23 C 1.53618 * 108.93143 * 182.98363 * 16 15 14 24 24 C 1.52998 * 117.49537 * 231.07492 * 9 7 2 25 25 C 1.53002 * 117.49477 * 299.73556 * 9 7 2 26 26 H 0.97001 * 119.99958 * 5.05279 * 1 2 3 27 27 H 1.08998 * 109.47111 * 305.14410 * 10 9 7 28 28 H 1.08997 * 109.46697 * 185.14090 * 10 9 7 29 29 H 0.96994 * 120.00060 * 358.28367 * 11 10 9 30 30 H 0.96994 * 119.99667 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.47129 * 60.00474 * 15 14 12 32 32 H 1.09003 * 109.47223 * 300.00065 * 15 14 12 33 33 H 0.96704 * 114.00504 * 298.68549 * 17 16 15 34 34 H 1.08995 * 109.65532 * 329.24705 * 18 16 15 35 35 H 1.08992 * 109.65244 * 89.56726 * 18 16 15 36 36 H 1.09008 * 111.07281 * 283.89386 * 19 18 16 37 37 H 1.08997 * 111.10924 * 159.86979 * 19 18 16 38 38 H 1.09005 * 110.26791 * 241.92966 * 23 16 15 39 39 H 1.09000 * 110.27257 * 3.99500 * 23 16 15 40 40 H 1.09003 * 117.49826 * 214.99651 * 24 9 7 41 41 H 1.08999 * 117.50120 * 0.02770 * 24 9 7 42 42 H 1.09003 * 117.49918 * 359.97438 * 25 9 7 43 43 H 1.08999 * 117.49882 * 144.97786 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1057 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0860 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5599 -4.0347 -3.2256 13 8 0.4128 -4.2452 -3.5693 14 7 2.5802 -4.3768 -4.0372 15 6 2.3070 -5.0028 -5.3331 16 6 3.6281 -5.2882 -6.0502 17 8 4.3683 -6.2473 -5.2925 18 6 4.4351 -3.9911 -6.1327 19 6 5.3239 -4.0395 -7.4029 20 16 4.1563 -4.7569 -8.6283 21 8 4.8776 -5.5259 -9.5810 22 8 3.2425 -3.7594 -9.0632 23 6 3.3256 -5.8748 -7.4374 24 6 1.7472 -3.4738 1.2150 25 6 0.4418 -2.7017 1.4229 26 1 -0.4850 0.8368 -0.0740 27 1 0.0754 -2.3456 -1.6488 28 1 0.1075 -3.9703 -0.9224 29 1 2.7263 -3.2901 -1.7594 30 1 3.4952 -4.2085 -3.7631 31 1 1.7012 -4.3306 -5.9408 32 1 1.7684 -5.9378 -5.1787 33 1 4.5990 -5.9512 -4.4013 34 1 3.7564 -3.1403 -6.1924 35 1 5.0645 -3.8941 -5.2483 36 1 6.1852 -4.6908 -7.2540 37 1 5.6385 -3.0391 -7.7002 38 1 3.7331 -6.8826 -7.5182 39 1 2.2505 -5.8858 -7.6166 40 1 1.6726 -4.5387 0.9946 41 1 2.6084 -3.1765 1.8133 42 1 0.4449 -1.8967 2.1579 43 1 -0.4916 -3.2583 1.3392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364310449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:37 Heat of formation + Delta-G solvation = -119.431324 kcal Electronic energy + Delta-G solvation = -26873.948331 eV Core-core repulsion = 22854.663913 eV Total energy + Delta-G solvation = -4019.284419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22273 -38.85602 -37.44513 -36.79773 -36.40995 -34.36971 -33.79119 -33.31331 -32.02583 -30.75144 -27.63807 -25.96912 -25.10390 -24.32274 -21.35944 -21.16257 -20.48385 -19.47871 -19.30216 -18.22497 -17.66680 -17.21190 -16.59677 -16.18826 -16.05843 -15.62462 -15.41227 -14.88994 -14.79859 -14.69385 -14.20000 -14.01774 -13.75970 -13.39313 -13.28456 -13.13389 -12.86073 -12.70750 -12.52708 -12.42571 -12.34750 -11.79012 -11.62786 -11.62176 -11.39932 -11.07473 -10.97398 -10.79050 -10.57896 -10.52086 -10.32919 -9.88569 -9.59830 -9.11550 -9.00954 -8.55904 -8.33451 -8.08888 -6.13445 -4.22559 -0.41123 1.99083 2.88583 3.10203 3.20165 3.29650 3.30449 3.38553 3.63522 3.72090 3.84897 3.86780 4.07423 4.29543 4.35545 4.39865 4.68129 4.81295 4.94900 5.14839 5.16054 5.24466 5.29016 5.32566 5.39265 5.61390 5.96345 6.28094 6.40015 6.45834 6.52712 6.63313 6.75427 7.02332 7.03521 7.17470 7.30449 7.39185 7.47727 7.75435 8.27706 8.49333 8.78287 9.04397 9.44621 10.94325 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002747 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.227875 B =10192.243356 C =11002.306437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.181 3.819 11 N -0.718 5.718 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.757 5.757 15 C 0.114 3.886 16 C 0.139 3.861 17 O -0.547 6.547 18 C -0.159 4.159 19 C -0.572 4.572 20 S 2.387 3.613 21 O -0.935 6.935 22 O -0.924 6.924 23 C -0.579 4.579 24 C -0.211 4.211 25 C -0.147 4.147 26 H 0.262 0.738 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.396 0.604 30 H 0.390 0.610 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.383 0.617 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -10.268 -11.888 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.058 3.942 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.416 5.416 15 C -0.012 4.012 16 C 0.096 3.904 17 O -0.355 6.355 18 C -0.198 4.198 19 C -0.702 4.702 20 S 2.569 3.431 21 O -0.932 6.932 22 O -0.922 6.922 23 C -0.707 4.707 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.229 0.771 30 H 0.224 0.776 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.233 0.767 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.821 -10.512 -13.648 19.829 hybrid contribution 1.378 1.323 1.720 2.570 sum 11.198 -9.189 -11.928 18.765 Atomic orbital electron populations 1.69980 1.05894 1.26895 1.48073 1.24991 0.94801 0.98968 0.94280 0.86583 0.80077 0.83874 0.77695 1.19785 1.21034 1.20926 1.20352 0.92778 0.88594 1.52166 0.92223 1.19042 0.98646 0.93897 0.85716 1.20884 0.86539 0.96753 0.90048 1.45149 1.11419 1.63403 1.17011 1.15988 0.84421 0.78918 0.80811 1.90898 1.19713 1.61549 1.75485 1.45036 1.08521 1.68585 1.19485 1.21987 0.95379 0.99565 0.84285 1.21311 0.91106 0.87375 0.90582 1.86612 1.75252 1.43123 1.30476 1.22921 0.98793 0.98830 0.99229 1.30513 1.13267 1.13737 1.12715 1.09292 0.78336 0.77592 0.77904 1.93626 1.71702 1.70486 1.57382 1.93675 1.61940 1.57032 1.79505 1.30506 1.15072 1.16892 1.08266 1.23024 0.98683 0.95652 1.07438 1.22497 0.92306 1.01081 1.02670 0.92827 0.91098 0.94635 0.77085 0.77618 0.90017 0.89968 0.76744 0.87559 0.87454 0.84082 0.84158 0.82554 0.83228 0.91656 0.90397 0.89797 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 12.91 55.43 0.72 -22.91 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 19.92 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -12.33 8.63 -34.44 -0.30 -12.63 16 8 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.41 16 10 C 0.18 3.95 5.50 -4.04 -0.02 3.93 16 11 N -0.72 -12.82 5.48 -65.22 -0.36 -13.18 16 12 C 0.70 12.07 8.57 -86.91 -0.74 11.33 16 13 O -0.60 -12.96 16.34 5.29 0.09 -12.88 16 14 N -0.76 -8.57 5.03 -65.23 -0.33 -8.90 16 15 C 0.11 1.14 4.30 -4.04 -0.02 1.12 16 16 C 0.14 0.95 1.01 -90.31 -0.09 0.86 16 17 O -0.55 -3.71 12.77 -35.23 -0.45 -4.16 16 18 C -0.16 -0.88 4.63 -25.63 -0.12 -1.00 16 19 C -0.57 -2.72 7.46 38.27 0.29 -2.43 16 20 S 2.39 17.23 6.05 -107.50 -0.65 16.58 16 21 O -0.93 -9.90 18.16 -57.69 -1.05 -10.95 16 22 O -0.92 -10.18 18.16 -57.69 -1.05 -11.23 16 23 C -0.58 -3.52 6.72 37.48 0.25 -3.27 16 24 C -0.21 -4.16 9.96 -26.69 -0.27 -4.43 16 25 C -0.15 -3.25 9.42 -26.69 -0.25 -3.50 16 26 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 27 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.40 6.21 8.38 -40.82 -0.34 5.87 16 30 H 0.39 3.04 6.83 -40.82 -0.28 2.77 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.38 1.62 7.92 45.56 0.36 1.99 16 34 H 0.11 0.66 7.83 -51.93 -0.41 0.26 16 35 H 0.11 0.40 7.45 -51.93 -0.39 0.02 16 36 H 0.14 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.16 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.15 0.76 7.63 -51.93 -0.40 0.36 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -36.48 370.19 -9.74 -46.22 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.63 Total: 8.76 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.58 Total: -7.82 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.03 Total: -44.99 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -2.46 Total: -39.22 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.65 Total: 16.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.48 -9.74 -46.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364310449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.215 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds