Wall clock time and date at job start Tue Mar 31 2020 16:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48507 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47234 * 300.00185 * 3 2 1 6 6 H 1.48497 * 109.47055 * 60.00488 * 3 2 1 7 7 C 1.37877 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99967 * 173.54703 * 7 2 1 9 9 C 1.50705 * 120.00003 * 353.55263 * 7 2 1 10 10 C 1.52998 * 115.55136 * 85.40406 * 9 7 2 11 11 N 1.46506 * 109.46816 * 65.14187 * 10 9 7 12 12 C 1.34775 * 119.99434 * 178.27721 * 11 10 9 13 13 O 1.21581 * 120.00421 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99828 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99945 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47076 * 180.02562 * 15 14 12 17 17 O 1.42894 * 108.89990 * 64.29569 * 16 15 14 18 18 C 1.52981 * 108.81901 * 305.67713 * 16 15 14 19 19 C 1.55103 * 108.66268 * 209.41019 * 18 16 15 20 20 S 1.83840 * 101.19180 * 41.87112 * 19 18 16 21 21 O 1.42100 * 109.61480 * 211.05177 * 20 19 18 22 22 O 1.42100 * 109.77956 * 77.13988 * 20 19 18 23 23 C 1.53618 * 108.93143 * 182.98363 * 16 15 14 24 24 C 1.52998 * 117.49537 * 231.07492 * 9 7 2 25 25 C 1.53002 * 117.49477 * 299.73556 * 9 7 2 26 26 H 0.97001 * 119.99958 * 5.05279 * 1 2 3 27 27 H 1.08998 * 109.47111 * 305.14410 * 10 9 7 28 28 H 1.08997 * 109.46697 * 185.14090 * 10 9 7 29 29 H 0.96994 * 120.00060 * 358.28367 * 11 10 9 30 30 H 0.96994 * 119.99667 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.47129 * 60.00474 * 15 14 12 32 32 H 1.09003 * 109.47223 * 300.00065 * 15 14 12 33 33 H 0.96704 * 114.00504 * 298.68549 * 17 16 15 34 34 H 1.08995 * 109.65532 * 329.24705 * 18 16 15 35 35 H 1.08992 * 109.65244 * 89.56726 * 18 16 15 36 36 H 1.09008 * 111.07281 * 283.89386 * 19 18 16 37 37 H 1.08997 * 111.10924 * 159.86979 * 19 18 16 38 38 H 1.09005 * 110.26791 * 241.92966 * 23 16 15 39 39 H 1.09000 * 110.27257 * 3.99500 * 23 16 15 40 40 H 1.09003 * 117.49826 * 214.99651 * 24 9 7 41 41 H 1.08999 * 117.50120 * 0.02770 * 24 9 7 42 42 H 1.09003 * 117.49918 * 359.97438 * 25 9 7 43 43 H 1.08999 * 117.49882 * 144.97786 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1057 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0860 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5599 -4.0347 -3.2256 13 8 0.4128 -4.2452 -3.5693 14 7 2.5802 -4.3768 -4.0372 15 6 2.3070 -5.0028 -5.3331 16 6 3.6281 -5.2882 -6.0502 17 8 4.3683 -6.2473 -5.2925 18 6 4.4351 -3.9911 -6.1327 19 6 5.3239 -4.0395 -7.4029 20 16 4.1563 -4.7569 -8.6283 21 8 4.8776 -5.5259 -9.5810 22 8 3.2425 -3.7594 -9.0632 23 6 3.3256 -5.8748 -7.4374 24 6 1.7472 -3.4738 1.2150 25 6 0.4418 -2.7017 1.4229 26 1 -0.4850 0.8368 -0.0740 27 1 0.0754 -2.3456 -1.6488 28 1 0.1075 -3.9703 -0.9224 29 1 2.7263 -3.2901 -1.7594 30 1 3.4952 -4.2085 -3.7631 31 1 1.7012 -4.3306 -5.9408 32 1 1.7684 -5.9378 -5.1787 33 1 4.5990 -5.9512 -4.4013 34 1 3.7564 -3.1403 -6.1924 35 1 5.0645 -3.8941 -5.2483 36 1 6.1852 -4.6908 -7.2540 37 1 5.6385 -3.0391 -7.7002 38 1 3.7331 -6.8826 -7.5182 39 1 2.2505 -5.8858 -7.6166 40 1 1.6726 -4.5387 0.9946 41 1 2.6084 -3.1765 1.8133 42 1 0.4449 -1.8967 2.1579 43 1 -0.4916 -3.2583 1.3392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364310449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:36 Heat of formation + Delta-G solvation = -151.357187 kcal Electronic energy + Delta-G solvation = -26875.332741 eV Core-core repulsion = 22854.663913 eV Total energy + Delta-G solvation = -4020.668828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25638 -39.86618 -38.46344 -38.13891 -37.10784 -35.27156 -34.91637 -34.45133 -33.92923 -31.31811 -28.75558 -27.60012 -26.51335 -25.05254 -22.95760 -22.00937 -21.63928 -21.21139 -19.94575 -19.43512 -18.43798 -18.11351 -17.70377 -17.10326 -16.82974 -16.72710 -16.67155 -16.45673 -15.77005 -15.64233 -15.59436 -15.01507 -14.89729 -14.56847 -14.37362 -14.01238 -13.69436 -13.62676 -13.45980 -13.29989 -13.23945 -13.14263 -12.91845 -12.88484 -12.80190 -12.30450 -12.19962 -12.01578 -11.96198 -11.50818 -11.32534 -11.29119 -11.08784 -10.82760 -10.44690 -10.33554 -10.02600 -9.60246 -8.07346 -6.20381 -0.96288 1.43100 1.46432 1.47417 1.55769 1.76036 2.24463 2.44382 2.53338 2.86068 3.20158 3.21339 3.25305 3.30041 3.39449 3.52717 3.66481 3.80898 4.01444 4.27998 4.34682 4.50438 4.58936 4.61006 4.65063 4.68731 4.77220 4.79108 4.88311 4.94131 5.02664 5.05749 5.30424 5.41825 5.61724 5.64286 5.72677 5.81496 6.11069 6.39362 6.64697 6.87390 7.23778 7.49400 7.68554 9.00274 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002747 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.227875 B =10192.243356 C =11002.306437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.501 4.501 8 H 0.068 0.932 9 C 0.008 3.992 10 C 0.199 3.801 11 N -0.712 5.712 12 C 0.696 3.304 13 O -0.646 6.646 14 N -0.730 5.730 15 C 0.108 3.892 16 C 0.151 3.849 17 O -0.551 6.551 18 C -0.167 4.167 19 C -0.546 4.546 20 S 2.388 3.612 21 O -0.974 6.974 22 O -0.971 6.971 23 C -0.575 4.575 24 C -0.173 4.173 25 C -0.163 4.163 26 H 0.257 0.743 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.409 0.591 30 H 0.412 0.588 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.452 -10.957 -11.393 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.181 1.181 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.007 3.993 10 C 0.074 3.926 11 N -0.365 5.365 12 C 0.396 3.604 13 O -0.528 6.528 14 N -0.389 5.389 15 C -0.017 4.017 16 C 0.108 3.892 17 O -0.360 6.360 18 C -0.206 4.206 19 C -0.679 4.679 20 S 2.575 3.425 21 O -0.971 6.971 22 O -0.968 6.968 23 C -0.704 4.704 24 C -0.210 4.210 25 C -0.202 4.202 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.245 0.755 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.118 0.882 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.041 -11.218 -13.190 21.677 hybrid contribution 0.421 1.471 1.612 2.223 sum 13.462 -9.747 -11.577 20.255 Atomic orbital electron populations 1.70116 1.07360 1.27180 1.49997 1.25712 0.95391 1.02099 0.94516 0.85652 0.79684 0.80205 0.76913 1.18146 1.21634 1.21495 1.20702 0.93236 0.89376 1.50522 0.91411 1.19053 0.99585 0.94484 0.86187 1.20385 0.87101 0.95147 0.89993 1.44857 1.11049 1.63593 1.17019 1.16169 0.84755 0.78583 0.80904 1.90870 1.22200 1.63318 1.76403 1.44722 1.08334 1.66986 1.18895 1.22149 0.97450 0.98633 0.83470 1.21151 0.89553 0.88255 0.90215 1.86616 1.74809 1.43176 1.31416 1.23035 0.99138 0.97584 1.00811 1.30395 1.12572 1.14916 1.10025 1.08998 0.78203 0.76918 0.78331 1.93570 1.72308 1.71367 1.59887 1.93614 1.63738 1.58324 1.81126 1.30447 1.15558 1.17103 1.07312 1.23007 0.97207 0.96252 1.04574 1.22441 0.93889 1.01511 1.02319 0.93351 0.95690 0.95043 0.75534 0.75072 0.91047 0.91000 0.75287 0.88175 0.84535 0.81697 0.82370 0.81291 0.82664 0.89271 0.89422 0.91908 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.28 12.91 21.45 0.28 -50.00 16 2 C 0.02 1.20 5.39 84.65 0.46 1.65 16 3 Si 0.95 40.59 29.55 68.60 2.03 42.61 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.50 -24.09 8.63 25.60 0.22 -23.87 16 8 H 0.07 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.01 0.34 1.38 -52.93 -0.07 0.27 16 10 C 0.20 8.70 5.50 86.38 0.48 9.18 16 11 N -0.71 -24.56 5.48 -478.53 -2.62 -27.18 16 12 C 0.70 23.42 8.57 179.05 1.53 24.95 16 13 O -0.65 -28.34 16.34 -3.97 -0.06 -28.40 16 14 N -0.73 -14.95 5.03 -478.54 -2.41 -17.35 16 15 C 0.11 2.01 4.30 86.38 0.37 2.38 16 16 C 0.15 1.67 1.01 -10.59 -0.01 1.66 16 17 O -0.55 -5.43 12.77 -148.98 -1.90 -7.34 16 18 C -0.17 -1.26 4.63 31.31 0.14 -1.12 16 19 C -0.55 -3.32 7.46 72.70 0.54 -2.78 16 20 S 2.39 32.40 6.05 -56.49 -0.34 32.06 16 21 O -0.97 -20.28 18.16 -127.50 -2.32 -22.60 16 22 O -0.97 -21.66 18.16 -127.50 -2.32 -23.98 16 23 C -0.57 -6.10 6.72 72.19 0.48 -5.62 16 24 C -0.17 -6.41 9.96 30.62 0.30 -6.11 16 25 C -0.16 -7.16 9.42 30.62 0.29 -6.87 16 26 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 27 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 29 H 0.41 11.79 8.38 -92.71 -0.78 11.02 16 30 H 0.41 4.92 6.83 -92.71 -0.63 4.29 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.40 1.61 7.92 -74.05 -0.59 1.03 16 34 H 0.10 0.97 7.83 -2.39 -0.02 0.96 16 35 H 0.14 0.31 7.45 -2.39 -0.02 0.29 16 36 H 0.17 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.17 1.41 7.92 -2.38 -0.02 1.39 16 39 H 0.16 1.49 7.63 -2.39 -0.02 1.47 16 40 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -80.94 370.19 -5.86 -86.81 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.94 Total: 21.66 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.74 Total: -6.29 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -4.75 Total: -94.53 kcal Atomic # 8 Polarization: -75.72 SS G_CDS: -6.60 Total: -82.32 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 32.40 SS G_CDS: -0.34 Total: 32.06 kcal Total: -80.94 -5.86 -86.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364310449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.550 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds