Wall clock time and date at job start Tue Mar 31 2020 18:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00350 * 2 1 4 4 O 1.20827 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00567 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47425 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00105 * 267.71107 * 6 5 3 8 8 H 1.08002 * 119.99517 * 197.93167 * 7 6 5 9 9 C 1.38949 * 120.00046 * 17.92469 * 7 6 5 10 10 N 1.31411 * 119.99956 * 19.80298 * 9 7 6 11 11 Si 1.86800 * 120.00050 * 199.80381 * 9 7 6 12 12 H 1.48503 * 109.47009 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47383 * 119.99947 * 11 9 7 14 14 H 1.48493 * 109.47203 * 240.00323 * 11 9 7 15 15 C 1.34776 * 119.99683 * 87.70988 * 6 5 3 16 16 O 1.21294 * 120.00185 * 4.20822 * 15 6 5 17 17 C 1.50701 * 119.99868 * 184.21023 * 15 6 5 18 18 H 1.09004 * 109.46125 * 319.14667 * 17 15 6 19 19 C 1.52912 * 109.46032 * 79.12205 * 17 15 6 20 20 C 1.50501 * 109.90669 * 71.43850 * 19 17 15 21 21 O 1.21282 * 119.61158 * 215.17797 * 20 19 17 22 22 N 1.34562 * 120.76805 * 35.16186 * 20 19 17 23 23 C 1.39819 * 120.45683 * 359.22020 * 22 20 19 24 24 C 1.38860 * 120.19140 * 161.46722 * 23 22 20 25 25 C 1.38109 * 119.89427 * 180.02562 * 24 23 22 26 26 C 1.38298 * 120.09027 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.15067 * 0.02562 * 26 25 24 28 28 C 1.38109 * 120.02764 * 359.94452 * 27 26 25 29 29 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46575 * 299.99738 * 1 2 3 31 31 H 1.08992 * 109.46947 * 60.00196 * 1 2 3 32 32 H 1.08996 * 109.46617 * 59.99890 * 5 3 2 33 33 H 1.08999 * 109.46989 * 300.00053 * 5 3 2 34 34 H 0.97000 * 119.99721 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.39291 * 191.57110 * 19 17 15 36 36 H 1.08994 * 109.40198 * 311.39114 * 19 17 15 37 37 H 0.96996 * 119.77117 * 179.20924 * 22 20 19 38 38 H 1.08001 * 120.05345 * 0.04905 * 24 23 22 39 39 H 1.08006 * 119.95239 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.92795 * 180.02562 * 26 25 24 41 41 H 1.08003 * 119.99337 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.2212 3.3233 -1.1876 8 1 4.7931 4.2394 -1.1992 9 6 3.7282 2.7969 -2.3753 10 7 2.7353 1.9366 -2.3506 11 14 4.4770 3.3123 -4.0072 12 1 5.5726 4.2848 -3.7640 13 1 5.0202 2.1176 -4.7020 14 1 3.4332 3.9449 -4.8530 15 6 4.1286 3.3393 1.1650 16 8 3.9914 2.7504 2.2164 17 6 4.4632 4.8087 1.1625 18 1 5.2012 5.0118 0.3864 19 6 3.1964 5.6192 0.8855 20 6 2.2839 5.5685 2.0813 21 8 1.0823 5.5484 1.9178 22 7 2.7857 5.5448 3.3296 23 6 4.1683 5.5506 3.5379 24 6 4.6866 5.9090 4.7753 25 6 6.0533 5.9131 4.9741 26 6 6.9050 5.5605 3.9431 27 6 6.3919 5.2032 2.7097 28 6 5.0261 5.1966 2.5050 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9565 0.7805 0.8891 34 1 2.3909 1.5694 -3.1797 35 1 3.4670 6.6549 0.6802 36 1 2.6812 5.2014 0.0206 37 1 2.1842 5.5238 4.0902 38 1 4.0220 6.1836 5.5811 39 1 6.4575 6.1920 5.9361 40 1 7.9733 5.5643 4.1016 41 1 7.0594 4.9288 1.9063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348803301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:02 Heat of formation + Delta-G solvation = -110.324458 kcal Electronic energy + Delta-G solvation = -29983.836371 eV Core-core repulsion = 25829.502905 eV Total energy + Delta-G solvation = -4154.333467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86943 -39.32567 -38.30414 -38.11358 -35.46719 -34.79709 -34.55173 -33.48075 -31.64765 -29.91798 -29.09427 -28.48687 -26.37277 -25.23672 -24.17051 -22.54536 -22.40586 -20.51327 -19.60991 -18.74160 -17.67655 -17.18597 -16.75337 -16.59698 -16.22059 -15.46509 -15.33129 -15.20574 -15.02998 -14.53298 -14.24290 -14.14933 -14.06573 -13.59552 -13.36381 -13.01554 -12.78661 -12.50478 -12.42699 -12.19332 -12.04017 -11.64071 -11.43679 -11.30468 -11.21623 -11.07482 -10.86615 -10.71315 -10.57174 -10.41058 -10.34132 -9.74298 -9.56306 -9.53508 -9.02648 -8.86391 -8.43995 -8.00891 -7.70988 -6.57075 -4.08901 1.48031 1.54346 2.98997 3.02019 3.14240 3.17689 3.40535 3.44631 3.75757 3.89146 4.04497 4.06958 4.58764 4.80954 4.85914 4.99571 5.04361 5.17459 5.38362 5.51942 5.63140 5.68434 5.72897 5.75122 5.83722 6.00598 6.05296 6.10818 6.13058 6.26871 6.37715 6.41602 6.45881 6.58311 6.59600 6.72341 7.01207 7.16861 7.25675 7.44338 7.53311 7.59497 8.13790 8.42866 8.89798 9.17526 9.28016 9.67013 10.49780 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.005199 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.292759 B = 5384.647335 C = 6328.123888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.378 6.378 3 C 0.483 3.517 4 O -0.491 6.491 5 C 0.159 3.841 6 N -0.424 5.424 7 C -0.343 4.343 8 H 0.106 0.894 9 C 0.041 3.959 10 N -0.862 5.862 11 Si 0.926 3.074 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.473 3.527 16 O -0.590 6.590 17 C -0.050 4.050 18 H 0.113 0.887 19 C -0.124 4.124 20 C 0.529 3.471 21 O -0.524 6.524 22 N -0.662 5.662 23 C 0.183 3.817 24 C -0.161 4.161 25 C -0.095 4.095 26 C -0.149 4.149 27 C -0.077 4.077 28 C -0.089 4.089 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.273 0.727 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.405 0.595 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 4.130 6.415 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.296 6.296 3 C 0.323 3.677 4 O -0.374 6.374 5 C 0.033 3.967 6 N -0.142 5.142 7 C -0.469 4.469 8 H 0.123 0.877 9 C -0.165 4.165 10 N -0.499 5.499 11 Si 0.752 3.248 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.207 1.207 15 C 0.261 3.739 16 O -0.474 6.474 17 C -0.071 4.071 18 H 0.131 0.869 19 C -0.164 4.164 20 C 0.318 3.682 21 O -0.399 6.399 22 N -0.305 5.305 23 C 0.087 3.913 24 C -0.182 4.182 25 C -0.113 4.113 26 C -0.168 4.168 27 C -0.096 4.096 28 C -0.092 4.092 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.242 0.758 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.034 4.019 6.450 9.116 hybrid contribution -0.331 0.132 -0.738 0.819 sum 4.702 4.151 5.712 8.484 Atomic orbital electron populations 1.22901 0.78739 1.01612 1.01660 1.86430 1.21636 1.35628 1.85921 1.23770 0.92119 0.80707 0.71075 1.90556 1.66268 1.36111 1.44514 1.20376 0.87583 0.85378 1.03357 1.43341 1.57330 1.08081 1.05473 1.19651 1.33777 1.10858 0.82663 0.87684 1.25238 0.94277 0.96924 1.00028 1.69747 1.20885 1.30517 1.28776 0.85891 0.79041 0.78642 0.81241 1.19079 1.20437 1.20726 1.19841 0.82474 0.87770 0.83794 1.90570 1.56861 1.68685 1.31320 1.19984 0.97693 0.94440 0.94992 0.86899 1.21613 0.95221 1.02032 0.97574 1.20738 0.89225 0.73848 0.84385 1.90740 1.15892 1.47658 1.85581 1.43546 1.05662 1.72220 1.09073 1.17578 0.82667 0.96708 0.94365 1.20661 0.95975 1.05793 0.95802 1.20833 0.92525 0.99205 0.98759 1.20969 0.99544 1.02951 0.93323 1.20840 0.93564 0.97650 0.97545 1.19227 0.93320 1.01809 0.94824 0.89750 0.93277 0.92587 0.86546 0.89903 0.91589 0.88103 0.85344 0.75825 0.85967 0.86039 0.86129 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.90 16 2 O -0.38 -8.41 10.56 -39.23 -0.41 -8.82 16 3 C 0.48 12.14 5.93 36.01 0.21 12.35 16 4 O -0.49 -13.91 15.52 -18.75 -0.29 -14.21 16 5 C 0.16 3.76 5.24 -5.19 -0.03 3.74 16 6 N -0.42 -10.17 2.12 -116.10 -0.25 -10.41 16 7 C -0.34 -8.00 8.36 -14.93 -0.12 -8.12 16 8 H 0.11 2.24 6.05 -52.49 -0.32 1.92 16 9 C 0.04 0.97 4.92 -17.47 -0.09 0.89 16 10 N -0.86 -21.73 8.76 55.50 0.49 -21.24 16 11 Si 0.93 18.36 29.60 -169.99 -5.03 13.33 16 12 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 13 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 15 C 0.47 10.98 6.37 -10.99 -0.07 10.91 16 16 O -0.59 -15.09 15.65 5.55 0.09 -15.01 16 17 C -0.05 -0.94 2.00 -92.99 -0.19 -1.13 16 18 H 0.11 1.91 6.38 -51.93 -0.33 1.58 16 19 C -0.12 -2.38 5.43 -28.02 -0.15 -2.53 16 20 C 0.53 10.95 7.37 -11.18 -0.08 10.87 16 21 O -0.52 -12.66 17.91 5.56 0.10 -12.56 16 22 N -0.66 -11.65 5.36 -10.01 -0.05 -11.71 16 23 C 0.18 3.02 6.37 -83.76 -0.53 2.49 16 24 C -0.16 -2.16 9.92 -39.40 -0.39 -2.55 16 25 C -0.09 -1.12 10.04 -39.61 -0.40 -1.52 16 26 C -0.15 -1.83 10.04 -39.54 -0.40 -2.23 16 27 C -0.08 -1.11 9.69 -39.61 -0.38 -1.50 16 28 C -0.09 -1.51 4.29 -104.46 -0.45 -1.96 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.06 1.07 8.13 -51.93 -0.42 0.64 16 32 H 0.12 2.70 6.67 -51.93 -0.35 2.36 16 33 H 0.08 1.87 7.44 -51.93 -0.39 1.48 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.13 2.85 7.38 -51.93 -0.38 2.47 16 37 H 0.40 6.29 8.83 -40.82 -0.36 5.93 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -33.67 349.17 -6.74 -40.42 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.64 Total: 13.34 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: -2.00 Total: 21.61 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.19 Total: -43.36 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.52 Total: -50.59 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.67 -6.74 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348803301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.909 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds