Wall clock time and date at job start Tue Mar 31 2020 18:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00350 * 2 1 4 4 O 1.20827 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00567 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47425 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00105 * 267.71107 * 6 5 3 8 8 H 1.08002 * 119.99517 * 197.93167 * 7 6 5 9 9 C 1.38949 * 120.00046 * 17.92469 * 7 6 5 10 10 N 1.31411 * 119.99956 * 19.80298 * 9 7 6 11 11 Si 1.86800 * 120.00050 * 199.80381 * 9 7 6 12 12 H 1.48503 * 109.47009 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47383 * 119.99947 * 11 9 7 14 14 H 1.48493 * 109.47203 * 240.00323 * 11 9 7 15 15 C 1.34776 * 119.99683 * 87.70988 * 6 5 3 16 16 O 1.21294 * 120.00185 * 4.20822 * 15 6 5 17 17 C 1.50701 * 119.99868 * 184.21023 * 15 6 5 18 18 H 1.09004 * 109.46125 * 319.14667 * 17 15 6 19 19 C 1.52912 * 109.46032 * 79.12205 * 17 15 6 20 20 C 1.50501 * 109.90669 * 71.43850 * 19 17 15 21 21 O 1.21282 * 119.61158 * 215.17797 * 20 19 17 22 22 N 1.34562 * 120.76805 * 35.16186 * 20 19 17 23 23 C 1.39819 * 120.45683 * 359.22020 * 22 20 19 24 24 C 1.38860 * 120.19140 * 161.46722 * 23 22 20 25 25 C 1.38109 * 119.89427 * 180.02562 * 24 23 22 26 26 C 1.38298 * 120.09027 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.15067 * 0.02562 * 26 25 24 28 28 C 1.38109 * 120.02764 * 359.94452 * 27 26 25 29 29 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46575 * 299.99738 * 1 2 3 31 31 H 1.08992 * 109.46947 * 60.00196 * 1 2 3 32 32 H 1.08996 * 109.46617 * 59.99890 * 5 3 2 33 33 H 1.08999 * 109.46989 * 300.00053 * 5 3 2 34 34 H 0.97000 * 119.99721 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.39291 * 191.57110 * 19 17 15 36 36 H 1.08994 * 109.40198 * 311.39114 * 19 17 15 37 37 H 0.96996 * 119.77117 * 179.20924 * 22 20 19 38 38 H 1.08001 * 120.05345 * 0.04905 * 24 23 22 39 39 H 1.08006 * 119.95239 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.92795 * 180.02562 * 26 25 24 41 41 H 1.08003 * 119.99337 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.2212 3.3233 -1.1876 8 1 4.7931 4.2394 -1.1992 9 6 3.7282 2.7969 -2.3753 10 7 2.7353 1.9366 -2.3506 11 14 4.4770 3.3123 -4.0072 12 1 5.5726 4.2848 -3.7640 13 1 5.0202 2.1176 -4.7020 14 1 3.4332 3.9449 -4.8530 15 6 4.1286 3.3393 1.1650 16 8 3.9914 2.7504 2.2164 17 6 4.4632 4.8087 1.1625 18 1 5.2012 5.0118 0.3864 19 6 3.1964 5.6192 0.8855 20 6 2.2839 5.5685 2.0813 21 8 1.0823 5.5484 1.9178 22 7 2.7857 5.5448 3.3296 23 6 4.1683 5.5506 3.5379 24 6 4.6866 5.9090 4.7753 25 6 6.0533 5.9131 4.9741 26 6 6.9050 5.5605 3.9431 27 6 6.3919 5.2032 2.7097 28 6 5.0261 5.1966 2.5050 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9565 0.7805 0.8891 34 1 2.3909 1.5694 -3.1797 35 1 3.4670 6.6549 0.6802 36 1 2.6812 5.2014 0.0206 37 1 2.1842 5.5238 4.0902 38 1 4.0220 6.1836 5.5811 39 1 6.4575 6.1920 5.9361 40 1 7.9733 5.5643 4.1016 41 1 7.0594 4.9288 1.9063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348803301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:01 Heat of formation + Delta-G solvation = -132.406554 kcal Electronic energy + Delta-G solvation = -29984.793923 eV Core-core repulsion = 25829.502905 eV Total energy + Delta-G solvation = -4155.291018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30377 -41.17830 -40.00604 -39.53528 -37.30124 -36.47859 -36.17026 -34.93043 -33.47450 -31.12764 -30.30857 -30.23446 -28.00260 -26.97179 -25.73069 -23.86489 -23.50997 -22.29442 -21.36408 -20.27445 -19.00429 -18.71807 -18.50933 -18.33264 -17.85219 -17.26570 -17.04481 -16.75526 -16.51680 -16.09163 -15.78828 -15.61607 -15.33825 -15.21786 -14.69609 -14.56448 -14.28203 -14.21139 -13.90589 -13.65229 -13.45079 -13.25796 -13.05026 -12.96854 -12.87268 -12.58846 -12.40412 -12.12317 -11.98322 -11.96554 -11.64437 -11.57498 -11.46789 -11.12423 -10.94529 -10.50765 -9.87881 -9.66871 -8.93140 -8.36794 -5.94040 0.30317 0.48402 1.40911 1.51345 1.51821 1.64178 1.67430 1.83108 2.07571 2.22697 2.35564 2.73928 3.06729 3.11764 3.40565 3.68617 3.82069 3.99841 4.10525 4.24895 4.28096 4.30636 4.37811 4.41004 4.49464 4.54100 4.60040 4.64801 4.68878 4.73051 4.75568 4.98847 5.11961 5.27801 5.45523 5.54285 5.63123 5.68035 5.73247 5.80042 5.97819 6.22567 6.31209 6.94476 7.07530 7.26220 7.46554 7.86239 8.70483 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.005199 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.292759 B = 5384.647335 C = 6328.123888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.380 6.380 3 C 0.484 3.516 4 O -0.532 6.532 5 C 0.157 3.843 6 N -0.435 5.435 7 C -0.351 4.351 8 H 0.125 0.875 9 C -0.004 4.004 10 N -0.896 5.896 11 Si 0.994 3.006 12 H -0.246 1.246 13 H -0.278 1.278 14 H -0.294 1.294 15 C 0.463 3.537 16 O -0.620 6.620 17 C -0.040 4.040 18 H 0.131 0.869 19 C -0.120 4.120 20 C 0.521 3.479 21 O -0.576 6.576 22 N -0.653 5.653 23 C 0.150 3.850 24 C -0.158 4.158 25 C -0.087 4.087 26 C -0.139 4.139 27 C -0.086 4.086 28 C -0.114 4.114 29 H 0.135 0.865 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.270 0.730 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.411 0.589 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.928 5.161 7.492 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.297 6.297 3 C 0.326 3.674 4 O -0.419 6.419 5 C 0.031 3.969 6 N -0.153 5.153 7 C -0.477 4.477 8 H 0.142 0.858 9 C -0.206 4.206 10 N -0.534 5.534 11 Si 0.818 3.182 12 H -0.169 1.169 13 H -0.204 1.204 14 H -0.220 1.220 15 C 0.253 3.747 16 O -0.507 6.507 17 C -0.061 4.061 18 H 0.149 0.851 19 C -0.160 4.160 20 C 0.311 3.689 21 O -0.456 6.456 22 N -0.295 5.295 23 C 0.055 3.945 24 C -0.178 4.178 25 C -0.105 4.105 26 C -0.157 4.157 27 C -0.105 4.105 28 C -0.117 4.117 29 H 0.153 0.847 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.249 0.751 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.930 5.041 7.564 12.063 hybrid contribution -1.181 -0.238 -0.923 1.518 sum 6.749 4.803 6.641 10.617 Atomic orbital electron populations 1.23223 0.76498 1.04656 1.00843 1.86404 1.23833 1.34129 1.85307 1.24051 0.92686 0.80786 0.69866 1.90534 1.67236 1.37517 1.46622 1.20417 0.86969 0.86064 1.03430 1.43609 1.57277 1.08215 1.06184 1.20123 1.33641 1.11418 0.82540 0.85795 1.26134 0.94286 0.96945 1.03199 1.69856 1.22321 1.32091 1.29145 0.84846 0.78229 0.78455 0.76643 1.16868 1.20375 1.22045 1.20658 0.81507 0.89511 0.83033 1.90523 1.58082 1.69853 1.32266 1.19924 0.97771 0.91045 0.97409 0.85083 1.21546 0.94776 1.04091 0.95565 1.21037 0.88746 0.73347 0.85798 1.90701 1.17780 1.50611 1.86470 1.43406 1.06817 1.71098 1.08225 1.17913 0.81608 0.99090 0.95909 1.21030 0.97365 1.04435 0.94963 1.21341 0.91640 0.97280 1.00277 1.21426 1.01483 1.00636 0.92193 1.21106 0.92557 0.97641 0.99189 1.19239 0.94671 1.03829 0.93918 0.84714 0.93801 0.93759 0.86480 0.89439 0.92020 0.84239 0.89041 0.75086 0.83641 0.82151 0.82687 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 10.56 113.37 1.20 2.73 16 2 O -0.38 -17.22 10.56 -51.32 -0.54 -17.77 16 3 C 0.48 25.25 5.93 71.24 0.42 25.67 16 4 O -0.53 -31.66 15.52 21.96 0.34 -31.32 16 5 C 0.16 7.70 5.24 85.64 0.45 8.14 16 6 N -0.43 -21.34 2.12 -639.60 -1.36 -22.70 16 7 C -0.35 -16.49 8.36 84.04 0.70 -15.79 16 8 H 0.12 5.18 6.05 -2.91 -0.02 5.16 16 9 C 0.00 -0.18 4.92 84.93 0.42 0.24 16 10 N -0.90 -46.44 8.76 21.66 0.19 -46.25 16 11 Si 0.99 37.57 29.60 68.60 2.03 39.60 16 12 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 13 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 15 C 0.46 21.89 6.37 87.66 0.56 22.44 16 16 O -0.62 -32.49 15.65 -3.07 -0.05 -32.54 16 17 C -0.04 -1.52 2.00 -12.33 -0.02 -1.55 16 18 H 0.13 4.30 6.38 -2.39 -0.02 4.28 16 19 C -0.12 -4.67 5.43 29.76 0.16 -4.51 16 20 C 0.52 22.34 7.37 87.63 0.65 22.99 16 21 O -0.58 -29.45 17.91 -3.03 -0.05 -29.51 16 22 N -0.65 -23.21 5.36 -304.09 -1.63 -24.84 16 23 C 0.15 4.74 6.37 38.16 0.24 4.98 16 24 C -0.16 -3.72 9.92 22.39 0.22 -3.50 16 25 C -0.09 -1.65 10.04 22.25 0.22 -1.43 16 26 C -0.14 -2.78 10.04 22.29 0.22 -2.55 16 27 C -0.09 -2.24 9.69 22.25 0.22 -2.03 16 28 C -0.11 -3.71 4.29 -19.76 -0.08 -3.80 16 29 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.12 5.62 6.67 -2.39 -0.02 5.61 16 33 H 0.09 4.09 7.44 -2.39 -0.02 4.08 16 34 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 36 H 0.09 4.27 7.38 -2.39 -0.02 4.26 16 37 H 0.41 13.00 8.83 -92.71 -0.82 12.18 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -77.38 349.17 4.78 -72.60 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.28 Total: 40.67 kcal Atomic # 6 Polarization: 46.48 SS G_CDS: 5.57 Total: 52.05 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.80 Total: -93.79 kcal Atomic # 8 Polarization: -110.83 SS G_CDS: -0.30 Total: -111.13 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -77.38 4.78 -72.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348803301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.805 kcal (2) G-P(sol) polarization free energy of solvation -77.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds