Wall clock time and date at job start Tue Mar 31 2020 17:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99758 * 2 1 4 4 N 1.34779 * 120.00478 * 180.02562 * 2 1 3 5 5 C 1.46509 * 124.91048 * 354.88712 * 4 2 1 6 6 C 1.53736 * 105.21466 * 180.02562 * 5 4 2 7 7 C 1.51254 * 104.50861 * 359.77580 * 6 5 4 8 8 C 1.37718 * 130.85748 * 179.52791 * 7 6 5 9 9 C 1.39749 * 120.02601 * 180.40243 * 8 7 6 10 10 C 1.47462 * 120.25024 * 180.23510 * 9 8 7 11 11 O 1.21510 * 119.99791 * 0.02562 * 10 9 8 12 12 O 1.34743 * 120.00241 * 179.97438 * 10 9 8 13 13 C 1.45199 * 116.99961 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47206 * 180.02562 * 13 12 10 15 15 O 1.21295 * 120.00179 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00537 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00359 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00182 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99784 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99619 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00132 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46876 * 90.00367 * 21 19 17 23 23 H 1.48501 * 109.46778 * 210.00593 * 21 19 17 24 24 H 1.48503 * 109.46755 * 330.00039 * 21 19 17 25 25 C 1.39825 * 119.50680 * 0.25621 * 9 8 7 26 26 C 1.37352 * 120.07597 * 359.97438 * 25 9 8 27 27 C 1.38878 * 108.49571 * 0.37627 * 7 6 5 28 28 H 1.08997 * 109.47057 * 274.96048 * 1 2 3 29 29 H 1.09001 * 109.47291 * 34.96472 * 1 2 3 30 30 H 1.09004 * 109.46597 * 154.96172 * 1 2 3 31 31 H 1.08995 * 110.29397 * 298.95877 * 5 4 2 32 32 H 1.09001 * 110.29171 * 61.09104 * 5 4 2 33 33 H 1.08998 * 110.42810 * 118.76013 * 6 5 4 34 34 H 1.09003 * 110.43032 * 241.11885 * 6 5 4 35 35 H 1.08001 * 119.98737 * 0.68095 * 8 7 6 36 36 H 1.09001 * 109.47635 * 300.00088 * 13 12 10 37 37 H 1.09006 * 109.47295 * 60.00446 * 13 12 10 38 38 H 0.97006 * 119.99546 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99668 * 180.02562 * 20 19 17 40 40 H 1.07995 * 119.96566 * 180.02562 * 25 9 8 41 41 H 1.07995 * 119.75571 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.5640 -2.4917 0.1060 6 6 2.7348 -3.4870 0.0600 7 6 3.9652 -2.6185 -0.0792 8 6 5.2989 -2.9521 -0.1610 9 6 6.2647 -1.9490 -0.2791 10 6 7.6937 -2.3008 -0.3722 11 8 8.0352 -3.4667 -0.3468 12 8 8.6206 -1.3296 -0.4866 13 6 10.0080 -1.7494 -0.5728 14 6 10.8933 -0.5359 -0.6943 15 8 10.4033 0.5736 -0.7065 16 7 12.2296 -0.6834 -0.7895 17 6 13.0350 0.4206 -0.8995 18 1 12.5987 1.4084 -0.9103 19 6 14.4127 0.2684 -0.9981 20 7 15.1847 1.3266 -1.1041 21 14 15.1673 -1.4403 -0.9801 22 1 15.2607 -1.9548 -2.3700 23 1 16.5259 -1.3751 -0.3840 24 1 14.3153 -2.3492 -0.1719 25 6 5.8660 -0.6091 -0.3080 26 6 4.5340 -0.2853 -0.2212 27 6 3.5656 -1.2887 -0.1019 28 1 -0.3633 0.0889 1.0238 29 1 -0.3634 0.8422 -0.5889 30 1 -0.3633 -0.9311 -0.4350 31 1 1.0265 -2.5836 1.0497 32 1 0.8891 -2.6629 -0.7327 33 1 2.7770 -4.0676 0.9815 34 1 2.6384 -4.1484 -0.8011 35 1 5.5982 -3.9896 -0.1383 36 1 10.2759 -2.3056 0.3254 37 1 10.1413 -2.3859 -1.4477 38 1 12.6216 -1.5707 -0.7794 39 1 16.1464 1.2203 -1.1733 40 1 6.6060 0.1720 -0.3996 41 1 4.2318 0.7513 -0.2444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:19 Heat of formation + Delta-G solvation = -111.713631 kcal Electronic energy + Delta-G solvation = -26841.484927 eV Core-core repulsion = 22687.091221 eV Total energy + Delta-G solvation = -4154.393706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66105 -40.31862 -38.98107 -38.26004 -36.74719 -36.04692 -34.02929 -32.89061 -31.78226 -31.61670 -29.75881 -29.49061 -28.37757 -24.97908 -24.08795 -23.82272 -22.43698 -20.80578 -20.03657 -19.61175 -18.56983 -17.89066 -17.64461 -16.94636 -16.78463 -16.51475 -16.33110 -15.58911 -15.10153 -15.00544 -14.94910 -14.59760 -14.18190 -14.10539 -13.76002 -13.36943 -13.19807 -13.08970 -12.98909 -12.93637 -12.86168 -12.52333 -12.44553 -12.28309 -12.20599 -12.12684 -11.30887 -11.24173 -10.64812 -10.62793 -10.58235 -10.48123 -10.32162 -10.02259 -9.64677 -9.15390 -8.63349 -8.26455 -8.25702 -6.36385 -3.89102 0.44158 1.09485 1.95451 2.20333 2.58946 2.63484 3.01190 3.05717 3.14174 3.55603 3.60464 3.73698 3.94295 4.06345 4.19689 4.39817 4.43840 4.59584 4.64680 4.72935 4.81010 4.87809 4.89854 5.05416 5.14254 5.18163 5.25536 5.27284 5.29483 5.37568 5.58894 5.67869 5.72632 5.81014 5.96382 6.10763 6.16073 6.52840 6.61266 6.79785 7.45695 7.47857 7.84158 8.04165 8.50946 8.86780 9.32954 9.68903 10.75934 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002091 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.271661 B =13389.727127 C =14388.702772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.519 3.481 3 O -0.513 6.513 4 N -0.557 5.557 5 C 0.100 3.900 6 C -0.082 4.082 7 C -0.157 4.157 8 C -0.012 4.012 9 C -0.144 4.144 10 C 0.511 3.489 11 O -0.516 6.516 12 O -0.320 6.320 13 C 0.059 3.941 14 C 0.448 3.552 15 O -0.556 6.556 16 N -0.580 5.580 17 C -0.307 4.307 18 H 0.122 0.878 19 C 0.044 3.956 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.268 1.268 25 C -0.027 4.027 26 C -0.146 4.146 27 C 0.177 3.823 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.373 0.627 39 H 0.275 0.725 40 H 0.153 0.847 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.805 -13.227 2.632 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.310 3.690 3 O -0.387 6.387 4 N -0.281 5.281 5 C -0.022 4.022 6 C -0.120 4.120 7 C -0.160 4.160 8 C -0.030 4.030 9 C -0.146 4.146 10 C 0.356 3.644 11 O -0.407 6.407 12 O -0.234 6.234 13 C -0.019 4.019 14 C 0.233 3.767 15 O -0.438 6.438 16 N -0.220 5.220 17 C -0.435 4.435 18 H 0.140 0.860 19 C -0.160 4.160 20 N -0.515 5.515 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.193 1.193 25 C -0.046 4.046 26 C -0.166 4.166 27 C 0.080 3.920 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.206 0.794 39 H 0.086 0.914 40 H 0.170 0.830 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -30.634 -12.010 2.613 33.008 hybrid contribution 0.900 -1.495 0.020 1.746 sum -29.734 -13.505 2.633 32.763 Atomic orbital electron populations 1.21918 0.90017 1.05374 1.05498 1.20950 0.91016 0.81804 0.75270 1.90752 1.70542 1.30511 1.46916 1.46018 1.04990 1.07857 1.69189 1.22236 0.96654 0.80104 1.03209 1.21078 0.89651 0.96893 1.04335 1.19783 0.94270 0.93081 1.08879 1.20341 0.89502 0.99639 0.93558 1.18901 0.89515 0.94474 1.11733 1.21020 0.86972 0.83551 0.72843 1.90812 1.82463 1.20250 1.47135 1.86601 1.16684 1.37472 1.82654 1.22758 0.78037 0.97513 1.03549 1.19196 0.82731 0.89356 0.85396 1.90607 1.73667 1.25839 1.53666 1.42033 1.04991 1.08803 1.66198 1.19426 0.87888 0.88222 1.48004 0.86001 1.25042 0.95822 0.97783 0.97313 1.69617 1.05161 1.28595 1.48100 0.86674 0.79996 0.83764 0.79048 1.19421 1.19983 1.19340 1.21456 0.95768 0.95821 0.91532 1.20954 0.91025 0.99915 1.04721 1.18661 0.83408 0.94553 0.95335 0.88162 0.88111 0.89825 0.89453 0.89430 0.88707 0.88736 0.84086 0.89324 0.89308 0.79391 0.91422 0.82969 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.93 36.01 0.36 -0.26 16 2 C 0.52 4.54 7.89 -10.98 -0.09 4.46 16 3 O -0.51 -6.75 15.24 5.56 0.08 -6.67 16 4 N -0.56 -4.56 3.11 -112.87 -0.35 -4.92 16 5 C 0.10 0.38 6.35 -3.65 -0.02 0.36 16 6 C -0.08 -0.40 6.94 -27.23 -0.19 -0.58 16 7 C -0.16 -1.46 6.21 -104.30 -0.65 -2.11 16 8 C -0.01 -0.13 9.59 -39.21 -0.38 -0.50 16 9 C -0.14 -1.97 5.88 -104.98 -0.62 -2.59 16 10 C 0.51 8.33 7.89 34.49 0.27 8.61 16 11 O -0.52 -8.92 16.14 -19.27 -0.31 -9.23 16 12 O -0.32 -5.94 9.01 -47.29 -0.43 -6.36 16 13 C 0.06 1.09 5.95 36.00 0.21 1.30 16 14 C 0.45 10.53 7.86 -10.99 -0.09 10.45 16 15 O -0.56 -15.44 16.08 -14.11 -0.23 -15.66 16 16 N -0.58 -13.94 5.09 -10.96 -0.06 -14.00 16 17 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 18 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 19 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 21 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 25 C -0.03 -0.36 9.59 -39.31 -0.38 -0.74 16 26 C -0.15 -1.85 9.43 -39.26 -0.37 -2.22 16 27 C 0.18 1.92 6.62 -83.56 -0.55 1.36 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.10 6.88 -51.93 -0.36 -0.26 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.14 7.66 -51.93 -0.40 -0.26 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.14 1.41 7.65 -52.49 -0.40 1.00 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 39 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.15 2.15 7.61 -52.49 -0.40 1.75 16 41 H 0.15 1.99 6.25 -52.49 -0.33 1.66 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -37.20 357.39 -7.21 -44.40 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.63 Total: 7.34 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -2.73 Total: 9.79 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.37 Total: -43.52 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.88 Total: -37.93 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.20 -7.21 -44.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.312 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds