Wall clock time and date at job start Tue Mar 31 2020 17:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 124.17728 * 2 1 4 4 O 1.21230 * 127.15582 * 0.02562 * 3 2 1 5 5 C 1.51584 * 105.68128 * 179.97438 * 3 2 1 6 6 N 1.47300 * 103.59658 * 0.32300 * 5 3 2 7 7 C 1.46507 * 126.69071 * 179.84448 * 6 5 3 8 8 C 1.50699 * 109.46894 * 269.97726 * 7 6 5 9 9 O 1.20830 * 120.00085 * 359.97438 * 8 7 6 10 10 O 1.34229 * 120.00110 * 179.97438 * 8 7 6 11 11 C 1.45193 * 117.00003 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46956 * 180.02562 * 11 10 8 13 13 C 1.38631 * 119.74836 * 269.73047 * 12 11 10 14 14 C 1.37625 * 120.24734 * 179.72527 * 13 12 11 15 15 C 1.40721 * 119.74117 * 0.56449 * 14 13 12 16 16 C 1.41396 * 120.24214 * 179.68356 * 15 14 13 17 17 H 1.08003 * 120.00052 * 204.40877 * 16 15 14 18 18 C 1.39941 * 119.99967 * 24.41366 * 16 15 14 19 19 N 1.30826 * 120.00349 * 17.83992 * 18 16 15 20 20 Si 1.86805 * 120.00056 * 197.84574 * 18 16 15 21 21 H 1.48503 * 109.47199 * 59.99674 * 20 18 16 22 22 H 1.48503 * 109.47260 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46947 * 300.00002 * 20 18 16 24 24 C 1.40715 * 119.51247 * 359.71143 * 15 14 13 25 25 C 1.37617 * 119.74582 * 359.97438 * 24 15 14 26 26 C 1.33791 * 124.17774 * 180.30361 * 2 1 3 27 27 O 1.21539 * 123.77208 * 359.96239 * 26 2 1 28 28 H 1.09002 * 109.46884 * 269.69679 * 1 2 3 29 29 H 1.09005 * 109.46984 * 149.70031 * 1 2 3 30 30 H 1.08999 * 109.47232 * 29.69800 * 1 2 3 31 31 H 1.09000 * 110.76661 * 241.70838 * 5 3 2 32 32 H 1.09003 * 110.43008 * 118.76957 * 5 3 2 33 33 H 1.08997 * 109.47332 * 29.97754 * 7 6 5 34 34 H 1.09003 * 109.47038 * 149.97984 * 7 6 5 35 35 H 1.09001 * 109.47513 * 300.00012 * 11 10 8 36 36 H 1.08999 * 109.47269 * 60.00528 * 11 10 8 37 37 H 1.07996 * 119.88171 * 359.97438 * 13 12 11 38 38 H 1.07998 * 120.12949 * 180.28106 * 14 13 12 39 39 H 0.97000 * 120.00076 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.12708 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.87391 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8340 2.2635 0.0004 5 6 3.6596 0.6341 0.0007 6 7 3.5338 -0.8335 -0.0071 7 6 4.6296 -1.8060 -0.0129 8 6 5.0041 -2.1323 -1.4357 9 8 4.4157 -1.6068 -2.3509 10 8 5.9912 -3.0066 -1.6862 11 6 6.2975 -3.2733 -3.0802 12 6 7.4231 -4.2718 -3.1651 13 6 8.7355 -3.8271 -3.2061 14 6 9.7716 -4.7301 -3.2779 15 6 9.4940 -6.1090 -3.3217 16 6 10.5500 -7.0458 -3.4023 17 1 10.3722 -8.0253 -3.8213 18 6 11.8255 -6.7040 -2.9390 19 7 11.9769 -5.6869 -2.1302 20 14 13.3121 -7.6998 -3.4756 21 1 13.4397 -7.6413 -4.9540 22 1 14.5363 -7.1375 -2.8509 23 1 13.1420 -9.1120 -3.0490 24 6 8.1578 -6.5486 -3.2852 25 6 7.1380 -5.6279 -3.2068 26 6 2.2166 -1.1068 -0.0059 27 8 1.7603 -2.2333 -0.0112 28 1 -0.3633 -0.0054 1.0277 29 1 -0.3633 -0.8873 -0.5185 30 1 -0.3633 0.8927 -0.5091 31 1 4.1790 0.9698 0.8982 32 1 4.1767 0.9794 -0.8946 33 1 5.4925 -1.3842 0.5024 34 1 4.3109 -2.7154 0.4966 35 1 5.4149 -3.6784 -3.5752 36 1 6.5958 -2.3466 -3.5704 37 1 8.9459 -2.7682 -3.1776 38 1 10.7934 -4.3818 -3.3052 39 1 12.8610 -5.4502 -1.8088 40 1 7.9334 -7.6045 -3.3186 41 1 6.1117 -5.9630 -3.1791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860306440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:44 Heat of formation + Delta-G solvation = -97.547872 kcal Electronic energy + Delta-G solvation = -26947.715365 eV Core-core repulsion = 22793.935932 eV Total energy + Delta-G solvation = -4153.779432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65718 -40.21090 -38.93420 -37.75331 -36.62893 -36.16216 -35.42447 -33.91579 -31.24520 -30.55136 -29.40921 -27.70360 -27.50424 -26.66513 -23.94967 -22.94679 -21.48710 -21.12851 -20.34127 -20.09929 -18.11819 -17.84281 -17.43232 -17.20533 -17.06173 -16.40840 -16.23886 -15.70244 -15.40266 -15.15160 -14.55473 -14.50935 -14.40620 -14.08449 -13.90649 -13.78588 -13.11296 -13.00551 -12.88051 -12.79941 -12.38498 -12.15240 -12.06602 -11.77616 -11.27418 -11.20535 -11.04744 -10.92547 -10.66535 -10.59240 -10.49036 -10.23899 -10.17510 -9.79001 -9.51780 -9.44139 -9.24738 -7.60738 -7.49414 -6.90619 -4.50398 1.24985 1.56584 2.24512 2.30828 2.55815 2.65404 2.95840 2.97702 2.99739 3.03300 3.35060 3.63995 3.82521 4.26227 4.44955 4.61592 4.72528 4.83214 4.92474 4.93543 4.98094 5.13606 5.25364 5.40521 5.56283 5.60889 5.63469 5.87864 6.02526 6.21033 6.27014 6.69335 6.72990 6.83630 6.93679 6.95609 7.14134 7.22413 7.47513 7.67691 7.69977 7.90854 7.91680 7.96564 8.15343 8.49729 8.74567 8.82635 10.03012 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.001945 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.568573 B =14394.911613 C =14719.263697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.579 5.579 3 C 0.527 3.473 4 O -0.472 6.472 5 C 0.064 3.936 6 N -0.612 5.612 7 C 0.159 3.841 8 C 0.435 3.565 9 O -0.512 6.512 10 O -0.346 6.346 11 C 0.138 3.862 12 C -0.238 4.238 13 C -0.075 4.075 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.230 4.230 25 C -0.062 4.062 26 C 0.706 3.294 27 O -0.534 6.534 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 11.422 6.682 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.325 5.325 3 C 0.315 3.685 4 O -0.342 6.342 5 C -0.062 4.062 6 N -0.351 5.351 7 C 0.036 3.964 8 C 0.276 3.724 9 O -0.401 6.401 10 O -0.262 6.262 11 C 0.066 3.934 12 C -0.240 4.240 13 C -0.094 4.094 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.484 4.484 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.409 5.409 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.081 4.081 26 C 0.408 3.592 27 O -0.407 6.407 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.935 11.596 6.515 18.554 hybrid contribution 0.690 -0.371 -0.351 0.858 sum -12.245 11.226 6.164 17.719 Atomic orbital electron populations 1.21848 0.74826 1.04876 1.03700 1.46233 1.09708 1.08005 1.68523 1.20824 0.88795 0.84693 0.74216 1.90823 1.79132 1.17865 1.46360 1.22582 0.96025 0.80516 1.07096 1.47063 1.04851 1.06381 1.76821 1.20765 0.89358 0.94114 0.92170 1.24110 0.78258 0.77325 0.92737 1.90647 1.51843 1.50724 1.46921 1.86717 1.49136 1.56344 1.34007 1.21763 0.96866 0.97816 0.76927 1.18656 0.92261 0.92571 1.20470 1.20526 0.92255 0.97452 0.99120 1.21297 0.98030 0.92830 1.06888 1.17691 0.91646 0.92593 0.86482 1.19660 0.93019 1.00593 1.35103 0.90163 1.25978 1.00795 0.95063 0.92587 1.69815 1.25585 1.24022 1.21449 0.86318 0.79449 0.80523 0.80209 1.18692 1.20216 1.18861 1.20971 0.93016 0.97236 1.13740 1.20406 0.97061 0.92455 0.98172 1.15762 0.81667 0.84283 0.77464 1.91010 1.75027 1.20284 1.54353 0.90794 0.89107 0.89337 0.85348 0.85586 0.84847 0.84835 0.92055 0.91984 0.89331 0.86215 0.90543 0.88679 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.73 59.85 0.64 1.29 16 2 N -0.58 -5.69 3.00 -128.16 -0.39 -6.08 16 3 C 0.53 4.87 8.32 -10.55 -0.09 4.78 16 4 O -0.47 -5.40 17.75 5.60 0.10 -5.30 16 5 C 0.06 0.44 7.66 -4.32 -0.03 0.41 16 6 N -0.61 -5.96 2.51 -181.40 -0.45 -6.41 16 7 C 0.16 1.49 6.74 -5.19 -0.03 1.46 16 8 C 0.43 6.22 8.03 36.01 0.29 6.51 16 9 O -0.51 -8.69 16.18 -18.75 -0.30 -8.99 16 10 O -0.35 -5.84 10.20 -39.25 -0.40 -6.24 16 11 C 0.14 2.52 5.58 36.01 0.20 2.72 16 12 C -0.24 -5.08 5.54 -104.33 -0.58 -5.66 16 13 C -0.07 -1.68 9.67 -39.66 -0.38 -2.06 16 14 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 15 C 0.12 3.05 5.58 -106.82 -0.60 2.45 16 16 C -0.46 -11.57 9.05 -37.74 -0.34 -11.91 16 17 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 18 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.78 -19.33 10.95 55.55 0.61 -18.72 16 20 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 25 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 26 C 0.71 8.43 8.31 -88.02 -0.73 7.70 16 27 O -0.53 -8.16 17.15 5.33 0.09 -8.07 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 30 H 0.09 0.55 8.00 -51.93 -0.42 0.14 16 31 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.13 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 36 H 0.06 1.07 8.07 -51.93 -0.42 0.66 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 39 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 40 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -32.72 366.30 -8.01 -40.73 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.91 Total: 3.64 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.85 Total: -2.83 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.23 Total: -31.21 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.51 Total: -28.60 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.72 -8.01 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860306440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.814 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds