Wall clock time and date at job start Tue Mar 31 2020 17:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 124.17728 * 2 1 4 4 O 1.21230 * 127.15582 * 0.02562 * 3 2 1 5 5 C 1.51584 * 105.68128 * 179.97438 * 3 2 1 6 6 N 1.47300 * 103.59658 * 0.32300 * 5 3 2 7 7 C 1.46507 * 126.69071 * 179.84448 * 6 5 3 8 8 C 1.50699 * 109.46894 * 269.97726 * 7 6 5 9 9 O 1.20830 * 120.00085 * 359.97438 * 8 7 6 10 10 O 1.34229 * 120.00110 * 179.97438 * 8 7 6 11 11 C 1.45193 * 117.00003 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46956 * 180.02562 * 11 10 8 13 13 C 1.38631 * 119.74836 * 269.73047 * 12 11 10 14 14 C 1.37625 * 120.24734 * 179.72527 * 13 12 11 15 15 C 1.40721 * 119.74117 * 0.56449 * 14 13 12 16 16 C 1.41396 * 120.24214 * 179.68356 * 15 14 13 17 17 H 1.08003 * 120.00052 * 204.40877 * 16 15 14 18 18 C 1.39941 * 119.99967 * 24.41366 * 16 15 14 19 19 N 1.30826 * 120.00349 * 17.83992 * 18 16 15 20 20 Si 1.86805 * 120.00056 * 197.84574 * 18 16 15 21 21 H 1.48503 * 109.47199 * 59.99674 * 20 18 16 22 22 H 1.48503 * 109.47260 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46947 * 300.00002 * 20 18 16 24 24 C 1.40715 * 119.51247 * 359.71143 * 15 14 13 25 25 C 1.37617 * 119.74582 * 359.97438 * 24 15 14 26 26 C 1.33791 * 124.17774 * 180.30361 * 2 1 3 27 27 O 1.21539 * 123.77208 * 359.96239 * 26 2 1 28 28 H 1.09002 * 109.46884 * 269.69679 * 1 2 3 29 29 H 1.09005 * 109.46984 * 149.70031 * 1 2 3 30 30 H 1.08999 * 109.47232 * 29.69800 * 1 2 3 31 31 H 1.09000 * 110.76661 * 241.70838 * 5 3 2 32 32 H 1.09003 * 110.43008 * 118.76957 * 5 3 2 33 33 H 1.08997 * 109.47332 * 29.97754 * 7 6 5 34 34 H 1.09003 * 109.47038 * 149.97984 * 7 6 5 35 35 H 1.09001 * 109.47513 * 300.00012 * 11 10 8 36 36 H 1.08999 * 109.47269 * 60.00528 * 11 10 8 37 37 H 1.07996 * 119.88171 * 359.97438 * 13 12 11 38 38 H 1.07998 * 120.12949 * 180.28106 * 14 13 12 39 39 H 0.97000 * 120.00076 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.12708 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.87391 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8340 2.2635 0.0004 5 6 3.6596 0.6341 0.0007 6 7 3.5338 -0.8335 -0.0071 7 6 4.6296 -1.8060 -0.0129 8 6 5.0041 -2.1323 -1.4357 9 8 4.4157 -1.6068 -2.3509 10 8 5.9912 -3.0066 -1.6862 11 6 6.2975 -3.2733 -3.0802 12 6 7.4231 -4.2718 -3.1651 13 6 8.7355 -3.8271 -3.2061 14 6 9.7716 -4.7301 -3.2779 15 6 9.4940 -6.1090 -3.3217 16 6 10.5500 -7.0458 -3.4023 17 1 10.3722 -8.0253 -3.8213 18 6 11.8255 -6.7040 -2.9390 19 7 11.9769 -5.6869 -2.1302 20 14 13.3121 -7.6998 -3.4756 21 1 13.4397 -7.6413 -4.9540 22 1 14.5363 -7.1375 -2.8509 23 1 13.1420 -9.1120 -3.0490 24 6 8.1578 -6.5486 -3.2852 25 6 7.1380 -5.6279 -3.2068 26 6 2.2166 -1.1068 -0.0059 27 8 1.7603 -2.2333 -0.0112 28 1 -0.3633 -0.0054 1.0277 29 1 -0.3633 -0.8873 -0.5185 30 1 -0.3633 0.8927 -0.5091 31 1 4.1790 0.9698 0.8982 32 1 4.1767 0.9794 -0.8946 33 1 5.4925 -1.3842 0.5024 34 1 4.3109 -2.7154 0.4966 35 1 5.4149 -3.6784 -3.5752 36 1 6.5958 -2.3466 -3.5704 37 1 8.9459 -2.7682 -3.1776 38 1 10.7934 -4.3818 -3.3052 39 1 12.8610 -5.4502 -1.8088 40 1 7.9334 -7.6045 -3.3186 41 1 6.1117 -5.9630 -3.1791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860306440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:43 Heat of formation + Delta-G solvation = -116.245277 kcal Electronic energy + Delta-G solvation = -26948.526145 eV Core-core repulsion = 22793.935932 eV Total energy + Delta-G solvation = -4154.590213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.43472 -41.42656 -39.80674 -39.45990 -37.73318 -37.24304 -36.25614 -35.67682 -32.70003 -31.59587 -31.20828 -29.08348 -28.20292 -27.71975 -25.55033 -23.80111 -22.94623 -22.50591 -21.80773 -21.22162 -19.26362 -19.07995 -18.67585 -18.17763 -17.87286 -17.61409 -17.35934 -17.08578 -16.59970 -16.03154 -15.90170 -15.62271 -15.51031 -15.32808 -15.08587 -14.82417 -14.35046 -14.16739 -13.89952 -13.81685 -13.67098 -13.56369 -13.52989 -13.19550 -12.83764 -12.69028 -12.59197 -12.15308 -12.11539 -11.85248 -11.67297 -11.50580 -11.42429 -11.27675 -11.03714 -10.96711 -10.27318 -9.42516 -9.32063 -8.68015 -6.38772 0.47089 0.68654 0.91352 1.12027 1.14310 1.39404 1.45853 1.51723 1.69566 1.84065 2.15861 2.20896 2.73222 2.96993 3.61091 3.61878 3.82076 4.08957 4.10196 4.14768 4.21079 4.32575 4.34468 4.39873 4.45057 4.48857 4.51334 4.55818 4.68699 4.74385 5.01707 5.11986 5.12758 5.31561 5.40359 5.50347 5.66003 5.89597 5.91999 6.06345 6.15212 6.23503 6.33277 6.65200 6.68867 6.86340 6.89420 6.97945 8.28361 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.001945 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.568573 B =14394.911613 C =14719.263697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.582 5.582 3 C 0.528 3.472 4 O -0.496 6.496 5 C 0.068 3.932 6 N -0.610 5.610 7 C 0.165 3.835 8 C 0.434 3.566 9 O -0.541 6.541 10 O -0.356 6.356 11 C 0.144 3.856 12 C -0.230 4.230 13 C -0.077 4.077 14 C -0.194 4.194 15 C 0.087 3.913 16 C -0.493 4.493 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.815 5.815 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.247 4.247 25 C -0.067 4.067 26 C 0.700 3.300 27 O -0.576 6.576 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.136 0.864 33 H 0.183 0.817 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.291 0.709 40 H 0.100 0.900 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 12.592 7.650 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.327 5.327 3 C 0.317 3.683 4 O -0.368 6.368 5 C -0.056 4.056 6 N -0.347 5.347 7 C 0.043 3.957 8 C 0.277 3.723 9 O -0.431 6.431 10 O -0.272 6.272 11 C 0.071 3.929 12 C -0.231 4.231 13 C -0.095 4.095 14 C -0.213 4.213 15 C 0.085 3.915 16 C -0.522 4.522 17 H 0.096 0.904 18 C -0.180 4.180 19 N -0.440 5.440 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.190 1.190 23 H -0.184 1.184 24 C -0.266 4.266 25 C -0.085 4.085 26 C 0.402 3.598 27 O -0.452 6.452 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.191 0.809 32 H 0.153 0.847 33 H 0.200 0.800 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.832 12.801 7.496 19.614 hybrid contribution 0.454 -0.607 -0.632 0.987 sum -12.379 12.194 6.864 18.683 Atomic orbital electron populations 1.22023 0.73919 1.05038 1.04867 1.46376 1.10546 1.07783 1.67989 1.21171 0.89719 0.84086 0.73307 1.90818 1.79747 1.18641 1.47605 1.22857 0.94615 0.78499 1.09597 1.47204 1.04104 1.07754 1.75662 1.21069 0.90778 0.95089 0.88804 1.25102 0.76783 0.75853 0.94536 1.90644 1.52516 1.51644 1.48342 1.86670 1.50457 1.57489 1.32542 1.21526 0.95799 0.97412 0.78149 1.18975 0.92886 0.93154 1.18093 1.20779 0.92251 0.98296 0.98203 1.21287 0.98134 0.93192 1.08726 1.18045 0.92696 0.93268 0.87523 1.19896 0.94430 1.00894 1.36991 0.90377 1.26792 1.03112 0.96139 0.91996 1.69855 1.26664 1.25380 1.22128 0.85233 0.75835 0.78947 0.79612 1.18546 1.19013 1.18377 1.21164 0.93033 0.98067 1.14342 1.20706 0.97846 0.92620 0.97331 1.16005 0.82535 0.84066 0.77177 1.90977 1.75930 1.21896 1.56392 0.89207 0.89699 0.88400 0.80927 0.84679 0.79961 0.84040 0.91684 0.90954 0.87079 0.87634 0.89798 0.88175 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.73 127.77 1.37 2.50 16 2 N -0.58 -10.64 3.00 -796.65 -2.39 -13.04 16 3 C 0.53 8.65 8.32 87.94 0.73 9.38 16 4 O -0.50 -10.54 17.75 -2.88 -0.05 -10.59 16 5 C 0.07 0.70 7.66 85.76 0.66 1.36 16 6 N -0.61 -10.06 2.51 -846.24 -2.12 -12.18 16 7 C 0.17 2.52 6.74 85.63 0.58 3.10 16 8 C 0.43 11.32 8.03 71.24 0.57 11.89 16 9 O -0.54 -17.29 16.18 21.95 0.36 -16.93 16 10 O -0.36 -11.15 10.20 -51.40 -0.52 -11.67 16 11 C 0.14 4.95 5.58 71.24 0.40 5.35 16 12 C -0.23 -9.54 5.54 -19.67 -0.11 -9.65 16 13 C -0.08 -3.41 9.67 22.22 0.21 -3.20 16 14 C -0.19 -9.88 8.70 22.73 0.20 -9.68 16 15 C 0.09 4.61 5.58 -21.29 -0.12 4.49 16 16 C -0.49 -25.88 9.05 23.46 0.21 -25.67 16 17 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.75 5.14 85.26 0.44 2.18 16 19 N -0.82 -40.93 10.95 21.83 0.24 -40.69 16 20 Si 0.98 36.64 29.60 68.60 2.03 38.67 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 23 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 24 C -0.25 -11.91 9.80 22.73 0.22 -11.69 16 25 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 26 C 0.70 15.66 8.31 179.44 1.49 17.15 16 27 O -0.58 -17.29 17.15 -3.84 -0.07 -17.36 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.27 7.86 -2.38 -0.02 1.25 16 30 H 0.10 1.14 8.00 -2.39 -0.02 1.13 16 31 H 0.17 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.18 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.14 2.07 8.03 -2.39 -0.02 2.05 16 35 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 36 H 0.07 2.34 8.07 -2.39 -0.02 2.33 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 39 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 40 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -73.34 366.30 5.61 -67.74 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.07 Total: 21.21 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 7.07 Total: -5.16 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -4.28 Total: -65.90 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.29 Total: -56.55 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -73.34 5.61 -67.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860306440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.508 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds