Wall clock time and date at job start Tue Mar 31 2020 16:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 O 1.45194 * 109.46903 * 240.00204 * 2 1 3 5 5 C 1.34838 * 116.99923 * 89.99989 * 4 2 1 6 6 O 1.21551 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.47009 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.35832 * 125.13782 * 179.97438 * 7 5 4 9 9 C 1.46408 * 106.13219 * 179.97438 * 8 7 5 10 10 N 1.32947 * 133.87600 * 180.02562 * 9 8 7 11 11 C 1.31427 * 121.38247 * 179.97438 * 10 9 8 12 12 C 1.38878 * 121.18519 * 0.02830 * 11 10 9 13 13 C 1.38202 * 119.71078 * 359.97438 * 12 11 10 14 14 C 1.39304 * 118.33914 * 0.02562 * 13 12 11 15 15 O 1.34575 * 133.41786 * 180.33574 * 14 13 12 16 16 C 1.50704 * 109.47292 * 120.00252 * 2 1 3 17 17 O 1.21281 * 119.99620 * 105.80431 * 16 2 1 18 18 N 1.34770 * 119.99916 * 285.80975 * 16 2 1 19 19 C 1.46500 * 120.00248 * 4.44544 * 18 16 2 20 20 C 1.46498 * 119.99836 * 184.17639 * 18 16 2 21 21 C 1.50700 * 109.47272 * 270.26961 * 20 18 16 22 22 H 1.08002 * 119.99718 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00061 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99536 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47116 * 89.99878 * 25 23 21 27 27 H 1.48504 * 109.46959 * 209.99547 * 25 23 21 28 28 H 1.48500 * 109.47465 * 329.99347 * 25 23 21 29 29 H 1.09007 * 109.47005 * 292.32564 * 1 2 3 30 30 H 1.09000 * 109.47518 * 52.32792 * 1 2 3 31 31 H 1.09006 * 109.47291 * 172.32971 * 1 2 3 32 32 H 1.07997 * 126.93632 * 359.95062 * 8 7 5 33 33 H 1.07995 * 119.40613 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.14163 * 179.97438 * 12 11 10 35 35 H 1.08005 * 120.82730 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47558 * 268.28481 * 19 18 16 37 37 H 1.09004 * 109.47186 * 28.29140 * 19 18 16 38 38 H 1.09001 * 109.46945 * 148.28284 * 19 18 16 39 39 H 1.09004 * 109.47199 * 30.27559 * 20 18 16 40 40 H 1.09002 * 109.47107 * 150.27183 * 20 18 16 41 41 H 0.97004 * 119.99904 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1855 5 6 2.2179 0.0675 -2.2860 6 8 1.9977 1.2625 -2.2550 7 6 2.7077 -0.5577 -3.5231 8 6 2.9481 0.0977 -4.6882 9 6 3.4186 -0.9150 -5.6351 10 7 3.8026 -0.8792 -6.9074 11 6 4.1893 -1.9664 -7.5365 12 6 4.2116 -3.1984 -6.8959 13 6 3.8220 -3.2898 -5.5731 14 6 3.4151 -2.1275 -4.9218 15 8 2.9911 -1.8681 -3.6712 16 6 2.0323 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1375 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5617 20 6 2.5280 -0.7600 3.6155 21 6 1.4834 -1.6331 4.2617 22 1 0.4934 -1.6968 3.8346 23 6 1.7917 -2.3514 5.3975 24 7 0.8802 -3.1137 5.9610 25 14 3.5041 -2.2418 6.1357 26 1 3.5469 -1.1348 7.1246 27 1 3.8347 -3.5222 6.8114 28 1 4.4920 -1.9813 5.0580 29 1 -0.3633 0.3904 0.9507 30 1 -0.3634 0.6280 -0.8134 31 1 -0.3634 -1.0185 -0.1372 32 1 2.8181 1.1529 -4.8781 33 1 4.4952 -1.9005 -8.5701 34 1 4.5321 -4.0812 -7.4292 35 1 3.8319 -4.2387 -5.0575 36 1 2.0381 1.9872 2.4446 37 1 0.5353 1.2926 1.7906 38 1 0.8355 1.2721 3.5449 39 1 3.3793 -1.3719 3.3174 40 1 2.8569 -0.0011 4.3255 41 1 1.0970 -3.6188 6.7603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923865349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:24 Heat of formation + Delta-G solvation = -51.690617 kcal Electronic energy + Delta-G solvation = -27472.386986 eV Core-core repulsion = 23320.596073 eV Total energy + Delta-G solvation = -4151.790912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.14052 -40.82591 -39.38091 -39.03123 -36.75961 -35.07093 -33.71028 -32.87633 -32.00186 -31.88714 -30.54981 -28.38202 -26.44871 -26.00373 -24.31624 -23.86106 -22.79124 -21.94534 -21.17371 -19.26970 -18.97291 -18.10342 -17.22384 -17.07518 -17.02016 -16.95674 -16.43097 -15.99025 -15.73917 -15.34219 -14.73470 -14.38651 -14.19538 -13.92617 -13.71902 -13.61726 -13.52400 -13.28716 -13.11863 -13.07302 -12.55179 -12.38621 -12.29544 -11.88582 -11.65971 -11.45523 -11.26625 -11.08977 -10.96746 -10.87681 -10.55357 -10.14900 -9.97887 -9.58673 -9.49922 -9.20775 -9.08690 -8.62605 -7.83964 -6.11863 -4.11162 -0.12723 0.63452 1.16265 1.67041 2.29198 2.43453 3.08901 3.23664 3.24611 3.32490 3.37135 3.42929 3.79199 3.90708 4.22414 4.35764 4.36801 4.42303 4.61923 4.68601 4.79521 4.85549 4.94863 5.03515 5.21075 5.27483 5.32086 5.44786 5.52552 5.58013 5.61629 5.75455 5.81684 5.94726 6.04719 6.19581 6.37038 6.56780 6.87638 7.17196 7.29638 7.33266 7.55364 8.05025 8.41180 8.76259 8.91354 9.47577 11.01369 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.002465 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.058188 B =11355.730895 C =12236.030435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.309 6.309 5 C 0.549 3.451 6 O -0.476 6.476 7 C 0.019 3.981 8 C -0.091 4.091 9 C 0.058 3.942 10 N -0.437 5.437 11 C 0.102 3.898 12 C -0.138 4.138 13 C -0.058 4.058 14 C 0.024 3.976 15 O -0.158 6.158 16 C 0.510 3.490 17 O -0.512 6.512 18 N -0.591 5.591 19 C 0.065 3.935 20 C 0.217 3.783 21 C -0.530 4.530 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.875 3.125 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.264 1.264 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.030 0.970 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 6.118 -24.814 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.127 0.873 4 O -0.223 6.223 5 C 0.392 3.608 6 O -0.365 6.365 7 C -0.032 4.032 8 C -0.111 4.111 9 C -0.071 4.071 10 N -0.146 5.146 11 C -0.064 4.064 12 C -0.158 4.158 13 C -0.084 4.084 14 C -0.027 4.027 15 O -0.057 6.057 16 C 0.294 3.706 17 O -0.387 6.387 18 N -0.324 5.324 19 C -0.078 4.078 20 C 0.097 3.903 21 C -0.569 4.569 22 H 0.094 0.906 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.701 3.299 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.188 1.188 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.201 0.799 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.232 6.380 -24.775 25.931 hybrid contribution 0.716 -0.672 0.983 1.390 sum 4.948 5.707 -23.791 24.962 Atomic orbital electron populations 1.22345 0.91625 1.04664 1.04406 1.22794 0.96440 0.97378 0.82009 0.87292 1.86791 1.75954 1.40378 1.19199 1.19274 0.74784 0.84437 0.82348 1.90943 1.48006 1.14167 1.83358 1.20661 1.06375 0.81963 0.94187 1.22512 0.99332 1.00521 0.88742 1.20534 1.02937 0.91780 0.91896 1.67026 1.08913 1.31861 1.06839 1.22894 0.96047 0.87117 1.00327 1.22138 0.99684 1.00219 0.93777 1.20612 0.97669 0.96162 0.93988 1.20666 1.00705 0.97390 0.83925 1.84190 1.68305 1.24887 1.28361 1.19700 0.80674 0.86550 0.83709 1.90732 1.44447 1.18066 1.85444 1.47735 1.56851 1.20026 1.07830 1.22031 0.97197 0.84542 1.04041 1.19735 0.95471 0.93199 0.81862 1.21296 0.98997 1.26295 1.10266 0.90630 1.24854 0.96995 0.94611 0.96535 1.69890 1.33785 1.28790 1.20920 0.86867 0.85283 0.77968 0.79755 1.20046 1.20876 1.18847 0.88623 0.90875 0.90244 0.79882 0.81344 0.82827 0.83039 0.93152 0.91243 0.89934 0.94063 0.95184 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.15 37.15 0.34 -1.97 16 2 C 0.07 1.15 2.17 -27.88 -0.06 1.09 16 3 H 0.11 1.51 6.71 -51.93 -0.35 1.16 16 4 O -0.31 -5.17 9.47 -48.24 -0.46 -5.63 16 5 C 0.55 7.88 7.92 34.28 0.27 8.15 16 6 O -0.48 -6.86 16.09 -19.30 -0.31 -7.17 16 7 C 0.02 0.24 7.11 -36.89 -0.26 -0.02 16 8 C -0.09 -1.02 10.81 -37.16 -0.40 -1.42 16 9 C 0.06 0.66 7.52 -83.18 -0.63 0.04 16 10 N -0.44 -4.58 10.41 -9.87 -0.10 -4.68 16 11 C 0.10 0.71 11.17 -17.49 -0.20 0.51 16 12 C -0.14 -0.79 10.09 -39.36 -0.40 -1.19 16 13 C -0.06 -0.46 10.19 -39.20 -0.40 -0.86 16 14 C 0.02 0.28 7.42 -38.26 -0.28 -0.01 16 15 O -0.16 -2.16 10.59 2.64 0.03 -2.13 16 16 C 0.51 10.58 7.00 -10.99 -0.08 10.50 16 17 O -0.51 -13.05 16.19 -13.67 -0.22 -13.27 16 18 N -0.59 -11.97 2.86 -182.95 -0.52 -12.49 16 19 C 0.07 0.95 9.86 59.85 0.59 1.54 16 20 C 0.22 5.24 4.20 -5.19 -0.02 5.22 16 21 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 22 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 24 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 25 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 29 H 0.10 1.18 5.52 -51.93 -0.29 0.90 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 35 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.84 4.21 -51.93 -0.22 0.62 16 38 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.04 1.08 6.55 -51.93 -0.34 0.74 16 40 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -36.85 359.39 -6.58 -43.43 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.55 Total: -1.72 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.96 Total: 8.22 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.15 Total: -43.80 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.96 Total: -28.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.85 -6.58 -43.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923865349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.258 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds