Wall clock time and date at job start Tue Mar 31 2020 16:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 O 1.45194 * 109.46903 * 240.00204 * 2 1 3 5 5 C 1.34838 * 116.99923 * 89.99989 * 4 2 1 6 6 O 1.21551 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.47009 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.35832 * 125.13782 * 179.97438 * 7 5 4 9 9 C 1.46408 * 106.13219 * 179.97438 * 8 7 5 10 10 N 1.32947 * 133.87600 * 180.02562 * 9 8 7 11 11 C 1.31427 * 121.38247 * 179.97438 * 10 9 8 12 12 C 1.38878 * 121.18519 * 0.02830 * 11 10 9 13 13 C 1.38202 * 119.71078 * 359.97438 * 12 11 10 14 14 C 1.39304 * 118.33914 * 0.02562 * 13 12 11 15 15 O 1.34575 * 133.41786 * 180.33574 * 14 13 12 16 16 C 1.50704 * 109.47292 * 120.00252 * 2 1 3 17 17 O 1.21281 * 119.99620 * 105.80431 * 16 2 1 18 18 N 1.34770 * 119.99916 * 285.80975 * 16 2 1 19 19 C 1.46500 * 120.00248 * 4.44544 * 18 16 2 20 20 C 1.46498 * 119.99836 * 184.17639 * 18 16 2 21 21 C 1.50700 * 109.47272 * 270.26961 * 20 18 16 22 22 H 1.08002 * 119.99718 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00061 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99536 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47116 * 89.99878 * 25 23 21 27 27 H 1.48504 * 109.46959 * 209.99547 * 25 23 21 28 28 H 1.48500 * 109.47465 * 329.99347 * 25 23 21 29 29 H 1.09007 * 109.47005 * 292.32564 * 1 2 3 30 30 H 1.09000 * 109.47518 * 52.32792 * 1 2 3 31 31 H 1.09006 * 109.47291 * 172.32971 * 1 2 3 32 32 H 1.07997 * 126.93632 * 359.95062 * 8 7 5 33 33 H 1.07995 * 119.40613 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.14163 * 179.97438 * 12 11 10 35 35 H 1.08005 * 120.82730 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47558 * 268.28481 * 19 18 16 37 37 H 1.09004 * 109.47186 * 28.29140 * 19 18 16 38 38 H 1.09001 * 109.46945 * 148.28284 * 19 18 16 39 39 H 1.09004 * 109.47199 * 30.27559 * 20 18 16 40 40 H 1.09002 * 109.47107 * 150.27183 * 20 18 16 41 41 H 0.97004 * 119.99904 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1855 5 6 2.2179 0.0675 -2.2860 6 8 1.9977 1.2625 -2.2550 7 6 2.7077 -0.5577 -3.5231 8 6 2.9481 0.0977 -4.6882 9 6 3.4186 -0.9150 -5.6351 10 7 3.8026 -0.8792 -6.9074 11 6 4.1893 -1.9664 -7.5365 12 6 4.2116 -3.1984 -6.8959 13 6 3.8220 -3.2898 -5.5731 14 6 3.4151 -2.1275 -4.9218 15 8 2.9911 -1.8681 -3.6712 16 6 2.0323 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1375 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5617 20 6 2.5280 -0.7600 3.6155 21 6 1.4834 -1.6331 4.2617 22 1 0.4934 -1.6968 3.8346 23 6 1.7917 -2.3514 5.3975 24 7 0.8802 -3.1137 5.9610 25 14 3.5041 -2.2418 6.1357 26 1 3.5469 -1.1348 7.1246 27 1 3.8347 -3.5222 6.8114 28 1 4.4920 -1.9813 5.0580 29 1 -0.3633 0.3904 0.9507 30 1 -0.3634 0.6280 -0.8134 31 1 -0.3634 -1.0185 -0.1372 32 1 2.8181 1.1529 -4.8781 33 1 4.4952 -1.9005 -8.5701 34 1 4.5321 -4.0812 -7.4292 35 1 3.8319 -4.2387 -5.0575 36 1 2.0381 1.9872 2.4446 37 1 0.5353 1.2926 1.7906 38 1 0.8355 1.2721 3.5449 39 1 3.3793 -1.3719 3.3174 40 1 2.8569 -0.0011 4.3255 41 1 1.0970 -3.6188 6.7603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923865349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:23 Heat of formation + Delta-G solvation = -76.971561 kcal Electronic energy + Delta-G solvation = -27473.483250 eV Core-core repulsion = 23320.596073 eV Total energy + Delta-G solvation = -4152.887176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.95615 -42.02817 -40.66002 -39.96037 -37.97417 -36.78334 -34.86319 -34.43863 -33.34137 -32.74246 -31.35827 -30.21805 -27.77283 -26.97599 -25.71180 -24.63781 -24.10551 -23.09934 -22.19113 -20.53686 -20.25193 -19.16035 -18.87230 -18.40531 -18.07227 -18.01128 -17.38160 -17.16059 -17.07133 -16.55043 -16.28451 -15.98747 -15.16593 -14.90946 -14.87209 -14.53273 -14.48899 -14.35042 -14.31306 -14.16404 -13.80279 -13.73288 -13.65623 -13.53587 -13.21718 -12.98650 -12.59673 -12.39674 -12.25585 -12.13831 -12.02965 -11.79846 -11.76705 -10.82886 -10.74527 -10.63309 -10.25478 -9.93890 -9.53474 -8.34577 -6.39979 -0.94000 -0.01978 0.36893 0.68890 1.31839 1.32936 1.37945 1.44307 1.46946 1.50802 2.18595 2.30787 2.59611 2.80605 2.99135 3.19087 3.27809 3.39574 3.56045 3.66936 3.73393 3.86768 4.06978 4.14658 4.19639 4.40317 4.44777 4.54221 4.59047 4.61453 4.71990 4.81047 4.84914 4.89400 4.93764 4.97394 5.10573 5.22013 5.42128 5.49533 5.63586 6.15856 6.22075 6.48025 6.61367 6.69137 7.11341 7.26241 8.82214 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.002465 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.058188 B =11355.730895 C =12236.030435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.137 0.863 4 O -0.334 6.334 5 C 0.554 3.446 6 O -0.480 6.480 7 C -0.013 4.013 8 C -0.071 4.071 9 C 0.031 3.969 10 N -0.462 5.462 11 C 0.105 3.895 12 C -0.112 4.112 13 C -0.072 4.072 14 C 0.001 3.999 15 O -0.184 6.184 16 C 0.500 3.500 17 O -0.574 6.574 18 N -0.596 5.596 19 C 0.056 3.944 20 C 0.223 3.777 21 C -0.536 4.536 22 H 0.031 0.969 23 C 0.011 3.989 24 N -0.944 5.944 25 Si 0.947 3.053 26 H -0.249 1.249 27 H -0.283 1.283 28 H -0.256 1.256 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.201 0.799 33 H 0.209 0.791 34 H 0.201 0.799 35 H 0.169 0.831 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 7.459 -27.055 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.154 0.846 4 O -0.249 6.249 5 C 0.398 3.602 6 O -0.369 6.369 7 C -0.062 4.062 8 C -0.091 4.091 9 C -0.096 4.096 10 N -0.172 5.172 11 C -0.061 4.061 12 C -0.131 4.131 13 C -0.098 4.098 14 C -0.049 4.049 15 O -0.085 6.085 16 C 0.286 3.714 17 O -0.453 6.453 18 N -0.328 5.328 19 C -0.085 4.085 20 C 0.101 3.899 21 C -0.575 4.575 22 H 0.050 0.950 23 C -0.187 4.187 24 N -0.584 5.584 25 Si 0.770 3.230 26 H -0.173 1.173 27 H -0.209 1.209 28 H -0.181 1.181 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.218 0.782 33 H 0.226 0.774 34 H 0.218 0.782 35 H 0.186 0.814 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.777 7.796 -27.020 28.710 hybrid contribution 0.214 -1.185 1.436 1.874 sum 5.992 6.611 -25.584 27.096 Atomic orbital electron populations 1.22362 0.89629 1.04400 1.06103 1.22737 0.97693 0.97382 0.79891 0.84571 1.86785 1.76579 1.41581 1.19966 1.19372 0.74437 0.84369 0.82056 1.90912 1.48480 1.14007 1.83467 1.20516 1.09130 0.82347 0.94258 1.22785 0.97052 1.01218 0.88014 1.20629 1.04511 0.91792 0.92691 1.67077 1.10070 1.33736 1.06367 1.23722 0.93938 0.86675 1.01765 1.22701 0.96484 1.01419 0.92492 1.21111 0.97683 0.95906 0.95102 1.21226 1.01538 0.98867 0.83306 1.84123 1.69233 1.25274 1.29859 1.20602 0.79500 0.86047 0.85205 1.90688 1.47214 1.20876 1.86559 1.47827 1.56628 1.21586 1.06728 1.22393 0.98666 0.82484 1.04929 1.19446 0.93559 0.93335 0.83518 1.21517 0.98266 1.27306 1.10410 0.95030 1.25851 1.01750 0.94040 0.97103 1.70046 1.36403 1.30130 1.21796 0.85719 0.79309 0.78719 0.79266 1.17258 1.20862 1.18055 0.87589 0.87959 0.91959 0.78163 0.77444 0.78206 0.81380 0.89613 0.88543 0.90308 0.96251 0.92317 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 9.15 71.98 0.66 -3.69 16 2 C 0.08 2.55 2.17 29.85 0.06 2.62 16 3 H 0.14 3.52 6.71 -2.39 -0.02 3.50 16 4 O -0.33 -11.53 9.47 -50.45 -0.48 -12.01 16 5 C 0.55 16.17 7.92 70.12 0.56 16.72 16 6 O -0.48 -13.46 16.09 19.67 0.32 -13.15 16 7 C -0.01 -0.35 7.11 24.01 0.17 -0.18 16 8 C -0.07 -1.60 10.81 23.84 0.26 -1.34 16 9 C 0.03 0.71 7.52 41.70 0.31 1.03 16 10 N -0.46 -8.94 10.41 -185.13 -1.93 -10.87 16 11 C 0.11 1.11 11.17 84.91 0.95 2.06 16 12 C -0.11 -0.87 10.09 22.41 0.23 -0.64 16 13 C -0.07 -1.04 10.19 22.52 0.23 -0.82 16 14 C 0.00 0.03 7.42 23.12 0.17 0.20 16 15 O -0.18 -5.32 10.59 -10.26 -0.11 -5.43 16 16 C 0.50 21.26 7.00 87.66 0.61 21.87 16 17 O -0.57 -30.83 16.19 15.35 0.25 -30.59 16 18 N -0.60 -24.11 2.86 -851.13 -2.43 -26.55 16 19 C 0.06 1.54 9.86 127.77 1.26 2.80 16 20 C 0.22 10.83 4.20 85.63 0.36 11.19 16 21 C -0.54 -31.44 9.94 25.60 0.25 -31.19 16 22 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 23 C 0.01 0.63 5.47 84.66 0.46 1.09 16 24 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 25 Si 0.95 44.21 27.47 68.60 1.88 46.10 16 26 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 29 H 0.11 2.48 5.52 -2.38 -0.01 2.47 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.20 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.21 0.41 8.06 -2.91 -0.02 0.38 16 34 H 0.20 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.09 4.21 -2.39 -0.01 2.08 16 38 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 39 H 0.02 1.03 6.55 -2.38 -0.02 1.01 16 40 H 0.06 2.52 7.50 -2.39 -0.02 2.50 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -86.91 359.39 5.38 -81.53 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.03 Total: 8.52 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.55 Total: 21.72 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.06 Total: -96.70 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -0.02 Total: -61.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -86.91 5.38 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923865349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.561 kcal (2) G-P(sol) polarization free energy of solvation -86.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds