Wall clock time and date at job start Tue Mar 31 2020 17:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00166 * 2 1 4 4 C 1.50703 * 109.47235 * 275.00138 * 3 2 1 5 5 H 1.08002 * 119.99666 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00223 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99625 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00030 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47386 * 59.99475 * 8 6 4 10 10 H 1.48498 * 109.47156 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46651 * 299.99061 * 8 6 4 12 12 S 1.65601 * 119.99913 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40213 * 156.46320 * 12 2 1 14 14 O 1.42102 * 106.40326 * 23.53613 * 12 2 1 15 15 N 1.65607 * 107.21922 * 270.00038 * 12 2 1 16 16 C 1.46499 * 119.99859 * 64.99787 * 15 12 2 17 17 H 1.08998 * 112.84747 * 355.11467 * 16 15 12 18 18 C 1.53788 * 113.60605 * 126.28374 * 16 15 12 19 19 C 1.53487 * 87.06890 * 140.58189 * 18 16 15 20 20 H 1.09003 * 115.58633 * 91.72092 * 19 18 16 21 21 C 1.53672 * 114.17926 * 227.94255 * 19 18 16 22 22 C 1.55368 * 105.33766 * 66.51683 * 21 19 18 23 23 H 1.09003 * 109.69531 * 257.82147 * 22 21 19 24 24 C 1.50696 * 109.96436 * 136.86562 * 22 21 19 25 25 O 1.20821 * 120.00176 * 241.88271 * 24 22 21 26 26 O 1.34236 * 119.99680 * 61.87946 * 24 22 21 27 27 C 1.53476 * 107.48129 * 17.26786 * 22 21 19 28 28 C 1.53735 * 107.37676 * 359.57186 * 27 22 21 29 29 H 1.09005 * 115.48414 * 113.86753 * 28 27 22 30 30 H 1.09000 * 109.46944 * 270.00166 * 1 2 3 31 31 H 1.08996 * 109.46857 * 29.99699 * 1 2 3 32 32 H 1.09002 * 109.47385 * 150.00307 * 1 2 3 33 33 H 1.09003 * 109.47434 * 35.00099 * 3 2 1 34 34 H 1.09003 * 109.47240 * 155.00052 * 3 2 1 35 35 H 0.97004 * 119.99599 * 180.02562 * 7 6 4 36 36 H 0.97000 * 119.99880 * 245.00369 * 15 12 2 37 37 H 1.09006 * 113.61238 * 26.03920 * 18 16 15 38 38 H 1.08999 * 113.61650 * 255.13453 * 18 16 15 39 39 H 1.09005 * 110.10599 * 185.93542 * 21 19 18 40 40 H 1.09004 * 110.10294 * 307.56016 * 21 19 18 41 41 H 0.96696 * 116.99827 * 179.97438 * 26 24 22 42 42 H 1.08999 * 109.86361 * 240.12505 * 27 22 21 43 43 H 1.08997 * 109.97258 * 119.08554 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.5035 3.6468 -0.6706 8 14 3.1784 3.5666 -3.4209 9 1 1.8318 3.7732 -4.0119 10 1 3.9211 4.8526 -3.4209 11 1 3.9234 2.5643 -4.2244 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5438 14 8 1.4113 -2.4068 -0.5433 15 7 2.5381 -1.8580 1.5827 16 6 1.3946 -2.1768 2.4412 17 1 0.4365 -2.0165 1.9467 18 6 1.5081 -3.5442 3.1355 19 6 0.9046 -2.8752 4.3781 20 1 -0.1809 -2.9291 4.4614 21 6 1.6629 -3.1687 5.6820 22 6 3.0455 -2.4792 5.5174 23 1 3.8010 -3.2252 5.2707 24 6 3.4223 -1.7707 6.7929 25 8 3.5777 -0.5725 6.7952 26 8 3.5851 -2.4708 7.9266 27 6 2.9211 -1.4639 4.3733 28 6 1.4806 -1.5447 3.8423 29 1 0.8717 -0.6546 4.0008 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6502 2.0043 0.5895 34 1 3.1858 1.1176 0.4343 35 1 3.9670 4.4804 -0.8472 36 1 3.4388 -1.8952 1.9409 37 1 2.5360 -3.8788 3.2756 38 1 0.8684 -4.3106 2.6979 39 1 1.1226 -2.7515 6.5318 40 1 1.7885 -4.2440 5.8085 41 1 3.8271 -1.9726 8.7193 42 1 3.6235 -1.7139 3.5782 43 1 3.1235 -0.4589 4.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598469312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:04 Heat of formation + Delta-G solvation = -145.449874 kcal Electronic energy + Delta-G solvation = -27728.904874 eV Core-core repulsion = 23708.492206 eV Total energy + Delta-G solvation = -4020.412668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39998 -39.90423 -36.58319 -36.42164 -35.47107 -35.13734 -34.44912 -32.41154 -31.89918 -28.99419 -27.76227 -26.23158 -25.04337 -24.00685 -22.40603 -22.25750 -20.32653 -19.00457 -18.81002 -18.19939 -17.47231 -17.17256 -16.62802 -16.45610 -16.24330 -15.88940 -15.25455 -15.08092 -14.61672 -14.29854 -13.70908 -13.48433 -13.39940 -13.24582 -12.76018 -12.68683 -12.30168 -12.13832 -11.99254 -11.87730 -11.67290 -11.59161 -11.57072 -11.41725 -11.15787 -11.06931 -11.04414 -11.02843 -10.78025 -10.69217 -10.48601 -10.35049 -10.31471 -10.01177 -9.75271 -9.21286 -8.41910 -8.04492 -6.03884 -4.08078 1.25533 1.94611 2.74254 3.35325 3.38867 3.43154 3.52546 3.92704 4.12095 4.20306 4.33751 4.46893 4.64218 4.75102 4.83011 4.95481 5.02766 5.15788 5.18733 5.28134 5.31139 5.38064 5.45952 5.51460 5.64730 5.66014 5.80788 5.82814 5.90667 5.96918 5.98965 6.14830 6.27143 6.29270 6.42193 6.57507 7.11220 7.28973 7.44648 7.62425 7.63581 7.93267 8.22999 8.93973 9.56985 11.04568 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.003468 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.849977 B = 8071.333800 C = 9106.864389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.259 3.741 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.778 3.222 13 O -0.965 6.965 14 O -0.998 6.998 15 N -1.120 6.120 16 C 0.143 3.857 17 H 0.114 0.886 18 C -0.141 4.141 19 C -0.116 4.116 20 H 0.106 0.894 21 C -0.095 4.095 22 C -0.083 4.083 23 H 0.110 0.890 24 C 0.482 3.518 25 O -0.508 6.508 26 O -0.518 6.518 27 C -0.108 4.108 28 C -0.119 4.119 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.409 0.591 42 H 0.080 0.920 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -14.715 16.718 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.137 3.863 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.786 3.214 13 O -0.949 6.949 14 O -0.982 6.982 15 N -0.878 5.878 16 C 0.034 3.966 17 H 0.132 0.868 18 C -0.180 4.180 19 C -0.135 4.135 20 H 0.124 0.876 21 C -0.133 4.133 22 C -0.102 4.102 23 H 0.128 0.872 24 C 0.324 3.676 25 O -0.395 6.395 26 O -0.330 6.330 27 C -0.145 4.145 28 C -0.139 4.139 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.267 0.733 42 H 0.099 0.901 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.827 -14.897 15.528 22.053 hybrid contribution 0.651 1.090 0.157 1.279 sum -4.175 -13.807 15.686 21.310 Atomic orbital electron populations 1.21374 0.80342 1.03528 1.00082 1.57576 1.14176 1.23320 1.88710 1.19026 0.91008 0.78719 0.97552 1.21466 1.36209 1.06356 0.92965 0.92266 1.24930 0.95111 0.96511 0.97448 1.69914 1.37231 1.15318 1.30958 0.86580 0.78280 0.77993 0.84730 1.20196 1.21181 1.19999 1.02037 0.73416 0.72943 0.73008 1.93643 1.40690 1.84840 1.75736 1.93527 1.67602 1.60114 1.76923 1.56365 1.14186 1.85236 1.32043 1.22169 0.89528 0.95163 0.89714 0.86838 1.23376 1.01955 0.97316 0.95363 1.23062 1.00033 0.96956 0.93417 0.87588 1.22116 0.92368 1.00729 0.98042 1.21849 1.00406 0.98619 0.89375 0.87168 1.23492 0.72569 0.86156 0.85374 1.90737 1.46729 1.16362 1.85689 1.84541 1.82019 1.45958 1.20444 1.21873 0.96597 1.00502 0.95567 1.23543 0.96408 0.98057 0.95899 0.88586 0.94363 0.90370 0.91608 0.94735 0.94456 0.92649 0.75370 0.89391 0.90529 0.90966 0.90077 0.73288 0.90131 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.41 59.85 0.62 2.18 16 2 N -0.99 -20.28 3.23 -123.05 -0.40 -20.67 16 3 C 0.26 6.49 5.08 -5.20 -0.03 6.46 16 4 C -0.53 -15.00 9.38 -34.44 -0.32 -15.32 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 S 2.78 53.79 6.03 -107.50 -0.65 53.14 16 13 O -0.97 -22.95 17.11 -57.17 -0.98 -23.93 16 14 O -1.00 -20.23 16.48 -57.17 -0.94 -21.17 16 15 N -1.12 -15.79 5.63 -4.12 -0.02 -15.81 16 16 C 0.14 1.62 4.25 -67.03 -0.28 1.33 16 17 H 0.11 1.27 7.56 -51.93 -0.39 0.87 16 18 C -0.14 -1.24 7.07 -26.07 -0.18 -1.42 16 19 C -0.12 -0.88 4.82 -89.20 -0.43 -1.31 16 20 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.09 -0.65 6.08 -25.13 -0.15 -0.80 16 22 C -0.08 -0.69 2.92 -90.27 -0.26 -0.95 16 23 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 24 C 0.48 4.66 7.46 36.00 0.27 4.93 16 25 O -0.51 -6.80 15.95 -18.75 -0.30 -7.10 16 26 O -0.52 -3.63 13.40 -39.27 -0.53 -4.15 16 27 C -0.11 -1.12 5.45 -26.10 -0.14 -1.26 16 28 C -0.12 -1.19 5.01 -88.92 -0.45 -1.64 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 33 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.41 5.17 6.62 -34.48 -0.23 4.94 16 37 H 0.09 0.72 7.46 -51.93 -0.39 0.33 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.49 7.81 -51.93 -0.41 0.09 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.41 1.30 9.10 45.56 0.41 1.72 16 42 H 0.08 0.82 5.50 -51.93 -0.29 0.53 16 43 H 0.10 1.23 6.37 -51.93 -0.33 0.90 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -36.79 361.38 -9.40 -46.19 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.29 Total: 2.79 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.46 Total: -6.13 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.32 Total: -62.09 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -2.75 Total: -56.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.65 Total: 53.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.79 -9.40 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.260 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds