Wall clock time and date at job start Tue Mar 31 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00166 * 2 1 4 4 C 1.50703 * 109.47235 * 275.00138 * 3 2 1 5 5 H 1.08002 * 119.99666 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00223 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99625 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00030 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47386 * 59.99475 * 8 6 4 10 10 H 1.48498 * 109.47156 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46651 * 299.99061 * 8 6 4 12 12 S 1.65601 * 119.99913 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40213 * 156.46320 * 12 2 1 14 14 O 1.42102 * 106.40326 * 23.53613 * 12 2 1 15 15 N 1.65607 * 107.21922 * 270.00038 * 12 2 1 16 16 C 1.46499 * 119.99859 * 64.99787 * 15 12 2 17 17 H 1.08998 * 112.84747 * 355.11467 * 16 15 12 18 18 C 1.53788 * 113.60605 * 126.28374 * 16 15 12 19 19 C 1.53487 * 87.06890 * 140.58189 * 18 16 15 20 20 H 1.09003 * 115.58633 * 91.72092 * 19 18 16 21 21 C 1.53672 * 114.17926 * 227.94255 * 19 18 16 22 22 C 1.55368 * 105.33766 * 66.51683 * 21 19 18 23 23 H 1.09003 * 109.69531 * 257.82147 * 22 21 19 24 24 C 1.50696 * 109.96436 * 136.86562 * 22 21 19 25 25 O 1.20821 * 120.00176 * 241.88271 * 24 22 21 26 26 O 1.34236 * 119.99680 * 61.87946 * 24 22 21 27 27 C 1.53476 * 107.48129 * 17.26786 * 22 21 19 28 28 C 1.53735 * 107.37676 * 359.57186 * 27 22 21 29 29 H 1.09005 * 115.48414 * 113.86753 * 28 27 22 30 30 H 1.09000 * 109.46944 * 270.00166 * 1 2 3 31 31 H 1.08996 * 109.46857 * 29.99699 * 1 2 3 32 32 H 1.09002 * 109.47385 * 150.00307 * 1 2 3 33 33 H 1.09003 * 109.47434 * 35.00099 * 3 2 1 34 34 H 1.09003 * 109.47240 * 155.00052 * 3 2 1 35 35 H 0.97004 * 119.99599 * 180.02562 * 7 6 4 36 36 H 0.97000 * 119.99880 * 245.00369 * 15 12 2 37 37 H 1.09006 * 113.61238 * 26.03920 * 18 16 15 38 38 H 1.08999 * 113.61650 * 255.13453 * 18 16 15 39 39 H 1.09005 * 110.10599 * 185.93542 * 21 19 18 40 40 H 1.09004 * 110.10294 * 307.56016 * 21 19 18 41 41 H 0.96696 * 116.99827 * 179.97438 * 26 24 22 42 42 H 1.08999 * 109.86361 * 240.12505 * 27 22 21 43 43 H 1.08997 * 109.97258 * 119.08554 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.5035 3.6468 -0.6706 8 14 3.1784 3.5666 -3.4209 9 1 1.8318 3.7732 -4.0119 10 1 3.9211 4.8526 -3.4209 11 1 3.9234 2.5643 -4.2244 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5438 14 8 1.4113 -2.4068 -0.5433 15 7 2.5381 -1.8580 1.5827 16 6 1.3946 -2.1768 2.4412 17 1 0.4365 -2.0165 1.9467 18 6 1.5081 -3.5442 3.1355 19 6 0.9046 -2.8752 4.3781 20 1 -0.1809 -2.9291 4.4614 21 6 1.6629 -3.1687 5.6820 22 6 3.0455 -2.4792 5.5174 23 1 3.8010 -3.2252 5.2707 24 6 3.4223 -1.7707 6.7929 25 8 3.5777 -0.5725 6.7952 26 8 3.5851 -2.4708 7.9266 27 6 2.9211 -1.4639 4.3733 28 6 1.4806 -1.5447 3.8423 29 1 0.8717 -0.6546 4.0008 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6502 2.0043 0.5895 34 1 3.1858 1.1176 0.4343 35 1 3.9670 4.4804 -0.8472 36 1 3.4388 -1.8952 1.9409 37 1 2.5360 -3.8788 3.2756 38 1 0.8684 -4.3106 2.6979 39 1 1.1226 -2.7515 6.5318 40 1 1.7885 -4.2440 5.8085 41 1 3.8271 -1.9726 8.7193 42 1 3.6235 -1.7139 3.5782 43 1 3.1235 -0.4589 4.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598469312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:03 Heat of formation + Delta-G solvation = -174.043950 kcal Electronic energy + Delta-G solvation = -27730.144806 eV Core-core repulsion = 23708.492206 eV Total energy + Delta-G solvation = -4021.652600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14256 -40.66528 -38.23749 -37.20267 -37.12903 -36.81903 -35.39413 -34.50276 -32.79047 -29.72834 -29.66873 -26.98214 -26.73872 -24.78431 -24.19357 -23.19105 -21.13146 -20.18197 -19.71656 -18.98432 -18.91233 -18.41117 -18.15543 -17.98867 -17.32574 -16.92063 -16.68329 -16.12706 -16.02385 -15.34511 -15.11853 -14.93183 -14.45732 -14.16142 -14.04454 -13.95592 -13.54770 -13.41412 -13.29518 -13.17609 -13.13118 -13.04158 -12.91442 -12.59851 -12.56352 -12.46169 -12.36374 -12.29282 -11.97284 -11.83790 -11.77811 -11.69470 -11.55923 -11.17504 -11.04860 -10.60283 -10.26552 -9.76047 -8.20609 -6.33074 -0.27621 1.21654 1.38461 1.42178 1.49360 2.05943 2.14912 2.40187 2.67971 3.10067 3.23190 3.44456 3.58227 3.59729 3.85850 4.06412 4.06791 4.12305 4.24806 4.41555 4.47699 4.60420 4.70951 4.72640 4.78689 4.81361 4.81986 5.01358 5.07210 5.08629 5.12861 5.20162 5.22766 5.25011 5.41120 5.46137 5.61060 5.67815 5.69718 5.87680 6.09157 6.17722 6.75358 7.00950 7.35869 8.86572 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.003468 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.849977 B = 8071.333800 C = 9106.864389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.275 3.725 4 C -0.552 4.552 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.277 1.277 12 S 2.794 3.206 13 O -1.016 7.016 14 O -1.006 7.006 15 N -1.106 6.106 16 C 0.121 3.879 17 H 0.117 0.883 18 C -0.134 4.134 19 C -0.097 4.097 20 H 0.126 0.874 21 C -0.088 4.088 22 C -0.083 4.083 23 H 0.132 0.868 24 C 0.487 3.513 25 O -0.554 6.554 26 O -0.508 6.508 27 C -0.111 4.111 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.267 0.733 36 H 0.418 0.582 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.425 0.575 42 H 0.078 0.922 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 -16.581 17.646 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.151 3.849 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.203 1.203 12 S 2.803 3.197 13 O -1.000 7.000 14 O -0.990 6.990 15 N -0.868 5.868 16 C 0.014 3.986 17 H 0.135 0.865 18 C -0.173 4.173 19 C -0.116 4.116 20 H 0.144 0.856 21 C -0.125 4.125 22 C -0.102 4.102 23 H 0.150 0.850 24 C 0.331 3.669 25 O -0.445 6.445 26 O -0.321 6.321 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.287 0.713 42 H 0.096 0.904 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.025 -16.792 16.478 24.285 hybrid contribution 0.999 1.608 -0.013 1.893 sum -5.026 -15.183 16.465 22.954 Atomic orbital electron populations 1.21610 0.78174 1.03611 1.02502 1.57461 1.15680 1.21902 1.89408 1.18537 0.90281 0.80340 0.95702 1.21836 1.36323 1.06691 0.94246 0.92966 1.25766 0.94770 0.96768 1.01521 1.70014 1.37789 1.15720 1.32885 0.85633 0.78854 0.77553 0.79839 1.18729 1.20135 1.20251 1.01316 0.72064 0.72478 0.73880 1.93568 1.43119 1.85465 1.77862 1.93508 1.67596 1.59923 1.77944 1.55937 1.15713 1.84610 1.30552 1.22663 0.88486 0.97742 0.89678 0.86484 1.23386 1.02934 0.95852 0.95149 1.23042 1.01123 0.94200 0.93235 0.85642 1.22129 0.90951 1.01932 0.97528 1.21910 1.02209 0.98212 0.87857 0.85018 1.23745 0.71372 0.85516 0.86264 1.90733 1.48985 1.18384 1.86430 1.84500 1.81350 1.45678 1.20603 1.21829 0.96905 0.99764 0.96403 1.23560 0.96424 0.99293 0.95288 0.89352 0.90779 0.91338 0.90450 0.95588 0.96839 0.92398 0.74398 0.88552 0.89470 0.90629 0.87713 0.71327 0.90382 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.81 10.41 127.77 1.33 4.14 16 2 N -1.00 -41.32 3.23 -543.23 -1.75 -43.08 16 3 C 0.28 14.22 5.08 85.64 0.43 14.65 16 4 C -0.55 -31.86 9.38 25.60 0.24 -31.62 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.65 5.46 84.66 0.46 1.11 16 7 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 8 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 S 2.79 108.96 6.03 -56.49 -0.34 108.62 16 13 O -1.02 -49.79 17.11 -128.00 -2.19 -51.98 16 14 O -1.01 -40.06 16.48 -128.00 -2.11 -42.17 16 15 N -1.11 -30.68 5.63 -166.96 -0.94 -31.62 16 16 C 0.12 2.55 4.25 45.58 0.19 2.74 16 17 H 0.12 2.37 7.56 -2.39 -0.02 2.35 16 18 C -0.13 -1.93 7.07 31.02 0.22 -1.72 16 19 C -0.10 -1.16 4.82 -9.87 -0.05 -1.21 16 20 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 21 C -0.09 -0.89 6.08 31.63 0.19 -0.70 16 22 C -0.08 -1.20 2.92 -10.57 -0.03 -1.23 16 23 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 24 C 0.49 8.83 7.46 71.23 0.53 9.36 16 25 O -0.55 -15.02 15.95 21.98 0.35 -14.67 16 26 O -0.51 -5.98 13.40 -51.47 -0.69 -6.67 16 27 C -0.11 -2.26 5.45 31.00 0.17 -2.09 16 28 C -0.13 -2.34 5.01 -9.69 -0.05 -2.39 16 29 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.07 1.86 7.98 -2.39 -0.02 1.84 16 31 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.08 2.33 7.02 -2.39 -0.02 2.32 16 33 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 34 H 0.01 0.76 7.61 -2.39 -0.02 0.74 16 35 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.42 10.52 6.62 -96.74 -0.64 9.88 16 37 H 0.10 1.25 7.46 -2.38 -0.02 1.24 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 0.77 7.81 -2.38 -0.02 0.75 16 40 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.43 1.90 9.10 -74.06 -0.67 1.23 16 42 H 0.08 1.57 5.50 -2.39 -0.01 1.55 16 43 H 0.07 1.81 6.37 -2.39 -0.02 1.79 16 Total: -1.00 -81.06 361.38 -1.97 -83.04 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.26 Total: 15.20 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.65 Total: -8.96 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -2.41 Total: -129.77 kcal Atomic # 8 Polarization: -110.86 SS G_CDS: -4.64 Total: -115.50 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 108.96 SS G_CDS: -0.34 Total: 108.62 kcal Total: -81.06 -1.97 -83.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.008 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds