Wall clock time and date at job start Tue Mar 31 2020 16:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40364 * 126.64586 * 2 1 4 4 C 1.35129 * 107.11914 * 179.74098 * 3 2 1 5 5 C 1.50701 * 125.61734 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.46864 * 209.99989 * 5 4 3 7 7 F 1.39901 * 109.47087 * 329.99962 * 5 4 3 8 8 O 1.33927 * 108.76587 * 0.02562 * 4 3 2 9 9 C 1.34918 * 109.38357 * 0.02562 * 8 4 3 10 10 C 1.46659 * 125.98356 * 180.02562 * 9 8 4 11 11 O 1.21700 * 119.99883 * 173.69956 * 10 9 8 12 12 N 1.34772 * 120.00360 * 353.69447 * 10 9 8 13 13 C 1.46503 * 119.99995 * 4.00475 * 12 10 9 14 14 C 1.52998 * 109.47249 * 83.68591 * 13 12 10 15 15 O 1.42906 * 109.47027 * 65.00415 * 14 13 12 16 16 C 1.46497 * 119.99988 * 183.99678 * 12 10 9 17 17 C 1.53002 * 109.47299 * 90.00385 * 16 12 10 18 18 N 1.46500 * 109.47675 * 179.97438 * 17 16 12 19 19 C 1.36934 * 120.00121 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00264 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47264 * 89.99416 * 23 21 19 25 25 H 1.48498 * 109.47539 * 209.99518 * 23 21 19 26 26 H 1.48507 * 109.46919 * 329.99912 * 23 21 19 27 27 H 1.09003 * 109.47042 * 90.02586 * 1 2 3 28 28 H 1.08998 * 109.47008 * 210.01520 * 1 2 3 29 29 H 1.08991 * 109.47206 * 330.01622 * 1 2 3 30 30 H 1.08005 * 126.44035 * 359.76540 * 3 2 1 31 31 H 1.09006 * 109.46818 * 90.00349 * 5 4 3 32 32 H 1.08997 * 109.46869 * 203.69261 * 13 12 10 33 33 H 1.09005 * 109.46573 * 323.68417 * 13 12 10 34 34 H 1.08998 * 109.46673 * 184.99690 * 14 13 12 35 35 H 1.08995 * 109.47332 * 305.00277 * 14 13 12 36 36 H 0.96692 * 113.99807 * 179.97438 * 15 14 13 37 37 H 1.09006 * 109.47461 * 210.00172 * 16 12 10 38 38 H 1.09005 * 109.47541 * 330.00509 * 16 12 10 39 39 H 1.08999 * 109.47318 * 300.00435 * 17 16 12 40 40 H 1.09005 * 109.46723 * 59.99624 * 17 16 12 41 41 H 0.97002 * 119.99271 * 359.97438 * 18 17 16 42 42 H 0.96998 * 120.00073 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0058 5 6 4.8550 1.5358 0.0085 6 9 5.8929 0.8634 -0.6455 7 9 4.5873 2.7382 -0.6547 8 8 3.6005 -0.6646 0.0088 9 6 2.3220 -1.0955 0.0044 10 6 1.8844 -2.4952 0.0063 11 8 0.7025 -2.7631 0.1175 12 7 2.7911 -3.4849 -0.1153 13 6 4.2205 -3.1673 -0.1610 14 6 4.7546 -3.0133 1.2644 15 8 4.6676 -4.2675 1.9438 16 6 2.3472 -4.8784 -0.2015 17 6 2.1219 -5.2521 -1.6680 18 7 1.6786 -6.6458 -1.7543 19 6 1.4136 -7.2055 -2.9756 20 1 1.5309 -6.6196 -3.8752 21 6 0.9931 -8.5259 -3.0573 22 7 0.8495 -9.2399 -1.9610 23 14 0.6308 -9.2894 -4.7232 24 1 1.8673 -9.9099 -5.2628 25 1 -0.4197 -10.3282 -4.5738 26 1 0.1569 -8.2368 -5.6576 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8901 0.5135 30 1 2.0305 2.1595 -0.0036 31 1 5.1492 1.7457 1.0369 32 1 4.7556 -3.9724 -0.6646 33 1 4.3683 -2.2356 -0.7071 34 1 5.7951 -2.6904 1.2296 35 1 4.1610 -2.2699 1.7965 36 1 4.9901 -4.2443 2.8551 37 1 3.1094 -5.5297 0.2264 38 1 1.4153 -4.9978 0.3512 39 1 1.3598 -4.6009 -2.0959 40 1 3.0538 -5.1327 -2.2206 41 1 1.5736 -7.1722 -0.9463 42 1 0.5561 -10.1627 -2.0182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501464145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:57 Heat of formation + Delta-G solvation = -145.389977 kcal Electronic energy + Delta-G solvation = -29195.835785 eV Core-core repulsion = 24621.585328 eV Total energy + Delta-G solvation = -4574.250457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.61611 -47.64221 -43.22432 -39.74529 -37.34251 -35.79638 -34.62903 -34.12120 -32.14894 -31.34720 -29.52823 -28.40607 -27.72800 -26.41215 -23.78540 -23.31288 -22.06429 -21.92370 -20.84159 -19.55646 -18.31042 -17.98328 -17.81524 -17.60254 -17.24967 -17.15778 -16.66164 -16.05857 -15.27307 -14.76948 -14.70763 -14.45846 -14.38282 -14.05050 -13.92533 -13.71561 -13.56810 -13.48348 -13.33052 -13.23532 -13.16172 -13.01048 -12.71766 -12.41652 -12.28894 -11.79860 -11.56404 -11.23177 -10.92267 -10.86119 -10.62112 -10.28668 -10.16936 -10.07903 -9.97790 -9.69399 -9.08687 -8.83187 -8.55893 -6.88925 -5.71713 -3.00951 0.57532 1.76725 1.89317 2.84695 3.03179 3.24393 3.47561 3.52187 3.53441 3.54732 4.06275 4.09948 4.18656 4.35343 4.43410 4.65187 4.91116 4.95346 4.97010 5.08457 5.16276 5.20118 5.39956 5.55375 5.57372 5.62937 5.70798 5.74009 5.81390 5.91245 6.06521 6.11787 6.21288 6.37448 6.54691 6.76462 6.91809 7.33614 7.49883 7.74343 8.01621 8.46622 9.57614 10.13806 10.49302 11.51202 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.002803 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.203987 B = 9986.556677 C =10380.101900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.094 4.094 3 C -0.162 4.162 4 C -0.089 4.089 5 C 0.364 3.636 6 F -0.189 7.189 7 F -0.183 7.183 8 O -0.139 6.139 9 C -0.047 4.047 10 C 0.594 3.406 11 O -0.504 6.504 12 N -0.585 5.585 13 C 0.102 3.898 14 C 0.064 3.936 15 O -0.563 6.563 16 C 0.112 3.888 17 C 0.142 3.858 18 N -0.729 5.729 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.377 0.623 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.021 0.979 40 H 0.018 0.982 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 25.865 10.523 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.181 4.181 4 C -0.142 4.142 5 C 0.310 3.690 6 F -0.170 7.170 7 F -0.164 7.164 8 O -0.035 6.035 9 C -0.100 4.100 10 C 0.380 3.620 11 O -0.381 6.381 12 N -0.316 5.316 13 C -0.021 4.021 14 C -0.015 4.015 15 O -0.368 6.368 16 C -0.010 4.010 17 C 0.013 3.987 18 N -0.374 5.374 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.223 0.777 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.567 25.286 9.788 28.753 hybrid contribution 0.156 -0.154 -0.308 0.378 sum 9.724 25.133 9.479 28.567 Atomic orbital electron populations 1.20486 0.87478 1.04055 1.03403 1.20658 0.98103 0.90331 1.00582 1.21496 0.90647 1.00767 1.05201 1.23081 0.97019 0.83188 1.10874 1.19564 0.79547 0.76025 0.93895 1.93074 1.59409 1.80535 1.83958 1.93070 1.94097 1.45486 1.83751 1.84282 1.28757 1.19655 1.70826 1.22342 0.80619 0.95446 1.11570 1.16629 0.85811 0.81500 0.78034 1.90893 1.15639 1.81499 1.50081 1.47724 1.05940 1.07396 1.70497 1.21943 0.80948 1.03391 0.95829 1.22629 0.99335 0.85990 0.93549 1.86584 1.87995 1.32167 1.30076 1.21823 1.01785 0.78504 0.98858 1.20927 0.96911 0.88115 0.92713 1.42187 1.81128 1.07199 1.06855 1.19205 1.37558 0.94487 0.85638 0.91214 1.24745 1.02378 0.96751 0.97101 1.69665 1.53524 1.08982 1.25992 0.86162 0.77587 0.78893 0.83394 1.21717 1.21729 1.20757 0.90448 0.88873 0.91252 0.81903 0.84270 0.88351 0.88128 0.92554 0.93850 0.77659 0.89226 0.89502 0.96066 0.96416 0.78165 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.89 36.00 0.36 -0.68 16 2 C -0.09 -1.07 6.20 -104.44 -0.65 -1.72 16 3 C -0.16 -1.43 10.38 -39.89 -0.41 -1.85 16 4 C -0.09 -0.78 6.93 -35.41 -0.25 -1.02 16 5 C 0.36 2.19 5.82 36.01 0.21 2.40 16 6 F -0.19 -1.54 17.31 2.25 0.04 -1.50 16 7 F -0.18 -1.31 17.02 2.25 0.04 -1.28 16 8 O -0.14 -1.48 6.21 4.99 0.03 -1.45 16 9 C -0.05 -0.61 6.56 -36.80 -0.24 -0.86 16 10 C 0.59 9.48 7.59 -12.86 -0.10 9.38 16 11 O -0.50 -9.50 14.27 5.19 0.07 -9.43 16 12 N -0.58 -9.01 2.43 -175.23 -0.43 -9.43 16 13 C 0.10 1.24 5.37 -4.04 -0.02 1.22 16 14 C 0.06 0.64 6.82 37.16 0.25 0.89 16 15 O -0.56 -6.35 13.26 -35.23 -0.47 -6.82 16 16 C 0.11 2.05 5.52 -4.04 -0.02 2.03 16 17 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 18 N -0.73 -19.56 5.60 -59.91 -0.34 -19.90 16 19 C -0.24 -6.96 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 23 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 1.22 8.02 -51.93 -0.42 0.80 16 33 H 0.10 1.12 5.37 -51.93 -0.28 0.85 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.43 7.27 -51.93 -0.38 0.05 16 36 H 0.38 2.50 9.12 45.56 0.42 2.92 16 37 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 38 H 0.09 1.73 7.37 -51.93 -0.38 1.34 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.38 10.72 7.67 -40.82 -0.31 10.40 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -35.86 365.10 -5.58 -41.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.59 Total: 7.87 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.14 Total: 5.25 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.04 Total: -57.62 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.36 Total: -17.70 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.86 -5.58 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501464145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.957 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds