Wall clock time and date at job start Tue Mar 31 2020 16:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40364 * 126.64586 * 2 1 4 4 C 1.35129 * 107.11914 * 179.74098 * 3 2 1 5 5 C 1.50701 * 125.61734 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.46864 * 209.99989 * 5 4 3 7 7 F 1.39901 * 109.47087 * 329.99962 * 5 4 3 8 8 O 1.33927 * 108.76587 * 0.02562 * 4 3 2 9 9 C 1.34918 * 109.38357 * 0.02562 * 8 4 3 10 10 C 1.46659 * 125.98356 * 180.02562 * 9 8 4 11 11 O 1.21700 * 119.99883 * 173.69956 * 10 9 8 12 12 N 1.34772 * 120.00360 * 353.69447 * 10 9 8 13 13 C 1.46503 * 119.99995 * 4.00475 * 12 10 9 14 14 C 1.52998 * 109.47249 * 83.68591 * 13 12 10 15 15 O 1.42906 * 109.47027 * 65.00415 * 14 13 12 16 16 C 1.46497 * 119.99988 * 183.99678 * 12 10 9 17 17 C 1.53002 * 109.47299 * 90.00385 * 16 12 10 18 18 N 1.46500 * 109.47675 * 179.97438 * 17 16 12 19 19 C 1.36934 * 120.00121 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00264 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47264 * 89.99416 * 23 21 19 25 25 H 1.48498 * 109.47539 * 209.99518 * 23 21 19 26 26 H 1.48507 * 109.46919 * 329.99912 * 23 21 19 27 27 H 1.09003 * 109.47042 * 90.02586 * 1 2 3 28 28 H 1.08998 * 109.47008 * 210.01520 * 1 2 3 29 29 H 1.08991 * 109.47206 * 330.01622 * 1 2 3 30 30 H 1.08005 * 126.44035 * 359.76540 * 3 2 1 31 31 H 1.09006 * 109.46818 * 90.00349 * 5 4 3 32 32 H 1.08997 * 109.46869 * 203.69261 * 13 12 10 33 33 H 1.09005 * 109.46573 * 323.68417 * 13 12 10 34 34 H 1.08998 * 109.46673 * 184.99690 * 14 13 12 35 35 H 1.08995 * 109.47332 * 305.00277 * 14 13 12 36 36 H 0.96692 * 113.99807 * 179.97438 * 15 14 13 37 37 H 1.09006 * 109.47461 * 210.00172 * 16 12 10 38 38 H 1.09005 * 109.47541 * 330.00509 * 16 12 10 39 39 H 1.08999 * 109.47318 * 300.00435 * 17 16 12 40 40 H 1.09005 * 109.46723 * 59.99624 * 17 16 12 41 41 H 0.97002 * 119.99271 * 359.97438 * 18 17 16 42 42 H 0.96998 * 120.00073 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0058 5 6 4.8550 1.5358 0.0085 6 9 5.8929 0.8634 -0.6455 7 9 4.5873 2.7382 -0.6547 8 8 3.6005 -0.6646 0.0088 9 6 2.3220 -1.0955 0.0044 10 6 1.8844 -2.4952 0.0063 11 8 0.7025 -2.7631 0.1175 12 7 2.7911 -3.4849 -0.1153 13 6 4.2205 -3.1673 -0.1610 14 6 4.7546 -3.0133 1.2644 15 8 4.6676 -4.2675 1.9438 16 6 2.3472 -4.8784 -0.2015 17 6 2.1219 -5.2521 -1.6680 18 7 1.6786 -6.6458 -1.7543 19 6 1.4136 -7.2055 -2.9756 20 1 1.5309 -6.6196 -3.8752 21 6 0.9931 -8.5259 -3.0573 22 7 0.8495 -9.2399 -1.9610 23 14 0.6308 -9.2894 -4.7232 24 1 1.8673 -9.9099 -5.2628 25 1 -0.4197 -10.3282 -4.5738 26 1 0.1569 -8.2368 -5.6576 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8901 0.5135 30 1 2.0305 2.1595 -0.0036 31 1 5.1492 1.7457 1.0369 32 1 4.7556 -3.9724 -0.6646 33 1 4.3683 -2.2356 -0.7071 34 1 5.7951 -2.6904 1.2296 35 1 4.1610 -2.2699 1.7965 36 1 4.9901 -4.2443 2.8551 37 1 3.1094 -5.5297 0.2264 38 1 1.4153 -4.9978 0.3512 39 1 1.3598 -4.6009 -2.0959 40 1 3.0538 -5.1327 -2.2206 41 1 1.5736 -7.1722 -0.9463 42 1 0.5561 -10.1627 -2.0182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501464145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:57 Heat of formation + Delta-G solvation = -172.029122 kcal Electronic energy + Delta-G solvation = -29196.990945 eV Core-core repulsion = 24621.585328 eV Total energy + Delta-G solvation = -4575.405617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.12688 -48.16501 -44.04254 -40.96670 -38.34555 -37.19219 -36.13359 -35.19461 -33.62389 -32.65144 -30.85132 -29.61581 -28.61851 -27.55273 -25.60705 -24.27016 -23.57409 -22.78565 -21.99601 -20.57044 -19.31188 -18.86029 -18.76169 -18.63759 -18.14241 -18.08397 -17.63033 -17.32481 -16.68286 -16.24264 -15.89177 -15.60948 -15.18933 -15.15935 -15.10670 -14.92623 -14.73015 -14.55776 -14.41671 -14.22940 -14.13444 -14.04585 -13.75853 -13.35360 -13.18168 -13.09538 -12.92945 -12.73849 -12.56622 -12.41500 -12.21962 -12.14820 -11.89951 -11.35241 -11.01537 -10.97119 -10.84936 -10.08514 -9.71512 -9.09739 -7.99173 -5.30801 -0.31652 0.97265 1.10393 1.45080 1.48236 1.56693 1.72407 1.91232 2.53691 2.61971 3.05032 3.29520 3.33012 3.34475 3.56420 3.72959 3.85319 3.99944 4.01962 4.05608 4.15967 4.17709 4.26136 4.26892 4.43778 4.47682 4.52075 4.59855 4.71496 4.84522 4.89069 4.94878 4.99290 5.05368 5.25802 5.36402 5.44502 5.59206 6.15652 6.21665 6.80499 6.90430 7.27847 7.97962 8.24693 9.24264 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.002803 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.203987 B = 9986.556677 C =10380.101900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.091 4.091 3 C -0.163 4.163 4 C -0.076 4.076 5 C 0.365 3.635 6 F -0.201 7.201 7 F -0.188 7.188 8 O -0.139 6.139 9 C -0.079 4.079 10 C 0.590 3.410 11 O -0.548 6.548 12 N -0.586 5.586 13 C 0.096 3.904 14 C 0.070 3.930 15 O -0.590 6.590 16 C 0.133 3.867 17 C 0.149 3.851 18 N -0.741 5.741 19 C -0.254 4.254 20 H 0.073 0.927 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.980 3.020 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.271 1.271 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.193 0.807 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.004 0.996 40 H 0.027 0.973 41 H 0.376 0.624 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 28.336 10.436 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.182 4.182 4 C -0.128 4.128 5 C 0.312 3.688 6 F -0.182 7.182 7 F -0.169 7.169 8 O -0.036 6.036 9 C -0.131 4.131 10 C 0.379 3.621 11 O -0.428 6.428 12 N -0.316 5.316 13 C -0.026 4.026 14 C -0.008 4.008 15 O -0.398 6.398 16 C 0.009 3.991 17 C 0.021 3.979 18 N -0.385 5.385 19 C -0.385 4.385 20 H 0.091 0.909 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.808 3.192 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.196 1.196 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.210 0.790 31 H 0.210 0.790 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.044 0.956 41 H 0.208 0.792 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.264 27.805 9.708 31.532 hybrid contribution -0.310 -0.780 -0.260 0.878 sum 10.955 27.026 9.448 30.654 Atomic orbital electron populations 1.20491 0.87419 1.04227 1.03317 1.20956 0.98495 0.90947 0.99025 1.21774 0.90084 1.01312 1.04989 1.23813 0.98470 0.82440 1.08111 1.20166 0.77824 0.74881 0.95955 1.93054 1.59760 1.80898 1.84498 1.93066 1.94047 1.45597 1.84189 1.84233 1.27474 1.20850 1.71052 1.21707 0.81977 0.94062 1.15358 1.17001 0.85298 0.82807 0.77030 1.90860 1.17302 1.82583 1.52023 1.47742 1.07498 1.05965 1.70415 1.22201 0.78784 1.03676 0.97911 1.22594 1.00925 0.85539 0.91789 1.86528 1.88482 1.33017 1.31780 1.21341 1.01046 0.80732 0.95933 1.20946 0.96180 0.85486 0.95246 1.42357 1.81332 1.08840 1.05939 1.19587 1.37339 0.95002 0.86574 0.90899 1.25648 1.02532 0.97242 1.01030 1.69825 1.54517 1.09140 1.28246 0.85058 0.77402 0.77871 0.78894 1.20799 1.21773 1.19626 0.90610 0.91531 0.88198 0.78988 0.79006 0.88812 0.87004 0.89379 0.93702 0.75439 0.88814 0.91600 0.97837 0.95551 0.79182 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.89 71.24 0.70 -1.35 16 2 C -0.09 -1.99 6.20 -19.74 -0.12 -2.11 16 3 C -0.16 -2.40 10.38 22.07 0.23 -2.18 16 4 C -0.08 -1.08 6.93 24.97 0.17 -0.91 16 5 C 0.36 2.92 5.82 71.24 0.41 3.33 16 6 F -0.20 -2.64 17.31 44.97 0.78 -1.86 16 7 F -0.19 -2.01 17.02 44.97 0.77 -1.24 16 8 O -0.14 -2.72 6.21 -5.05 -0.03 -2.76 16 9 C -0.08 -2.02 6.56 24.07 0.16 -1.86 16 10 C 0.59 19.53 7.59 86.44 0.66 20.18 16 11 O -0.55 -21.99 14.27 -4.35 -0.06 -22.05 16 12 N -0.59 -18.54 2.43 -826.53 -2.01 -20.55 16 13 C 0.10 2.27 5.37 86.38 0.46 2.73 16 14 C 0.07 1.28 6.82 71.98 0.49 1.77 16 15 O -0.59 -12.72 13.26 -148.98 -1.98 -14.70 16 16 C 0.13 5.09 5.52 86.38 0.48 5.56 16 17 C 0.15 6.80 6.58 86.38 0.57 7.37 16 18 N -0.74 -41.05 5.60 -343.45 -1.92 -42.98 16 19 C -0.25 -15.10 9.99 84.03 0.84 -14.26 16 20 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 22 N -0.97 -61.23 13.06 21.65 0.28 -60.94 16 23 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.78 6.33 -2.39 -0.02 1.77 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.19 -0.36 8.14 -2.38 -0.02 -0.38 16 32 H 0.09 2.28 8.02 -2.39 -0.02 2.26 16 33 H 0.11 2.38 5.37 -2.38 -0.01 2.36 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.81 7.27 -2.39 -0.02 0.80 16 36 H 0.40 4.73 9.12 -74.06 -0.68 4.06 16 37 H 0.09 3.50 7.74 -2.38 -0.02 3.48 16 38 H 0.07 2.80 7.37 -2.38 -0.02 2.78 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.38 21.80 7.67 -92.71 -0.71 21.09 16 42 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.85 365.10 3.07 -76.78 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.30 Total: 26.13 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.52 Total: 14.43 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -3.65 Total: -124.47 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -2.07 Total: -39.50 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.54 Total: -3.10 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -79.85 3.07 -76.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501464145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.245 kcal (2) G-P(sol) polarization free energy of solvation -79.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds