Wall clock time and date at job start Tue Mar 31 2020 16:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.91459 * 2 1 4 4 C 1.54907 * 111.00504 * 236.09801 * 2 1 3 5 5 N 1.47419 * 104.83203 * 204.91615 * 4 2 1 6 6 C 1.36939 * 125.64885 * 204.09072 * 5 4 2 7 7 H 1.07997 * 119.99728 * 359.72616 * 6 5 4 8 8 C 1.38815 * 119.99845 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99884 * 359.72042 * 8 6 5 10 10 Si 1.86798 * 119.99660 * 179.72678 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 119.99875 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99434 * 10 8 6 14 14 C 1.47023 * 108.70109 * 24.36071 * 5 4 2 15 15 C 1.54333 * 107.26879 * 358.57834 * 14 5 4 16 16 H 1.08998 * 110.51089 * 96.45611 * 15 14 5 17 17 N 1.46493 * 110.85255 * 219.67787 * 15 14 5 18 18 C 1.34776 * 120.00061 * 268.69412 * 17 15 14 19 19 O 1.21567 * 120.00064 * 359.97438 * 18 17 15 20 20 C 1.47712 * 120.00467 * 180.02562 * 18 17 15 21 21 N 1.31809 * 126.51087 * 0.02562 * 20 18 17 22 22 N 1.28471 * 110.07074 * 180.02562 * 21 20 18 23 23 H 0.97002 * 124.88359 * 180.02562 * 22 21 20 24 24 C 1.35035 * 110.23255 * 0.02562 * 22 21 20 25 25 C 1.35370 * 107.22515 * 359.72421 * 24 22 21 26 26 C 1.50700 * 127.24811 * 180.25435 * 25 24 22 27 27 F 1.39896 * 109.47105 * 0.19138 * 26 25 24 28 28 F 1.39902 * 109.46472 * 120.19180 * 26 25 24 29 29 F 1.39898 * 109.47108 * 240.18732 * 26 25 24 30 30 H 1.08997 * 109.47509 * 182.44635 * 1 2 3 31 31 H 1.09004 * 109.47376 * 302.45212 * 1 2 3 32 32 H 1.09007 * 109.46764 * 62.44384 * 1 2 3 33 33 H 1.09000 * 110.36937 * 86.07730 * 4 2 1 34 34 H 1.09004 * 110.46017 * 323.80418 * 4 2 1 35 35 H 0.97000 * 119.99517 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.88481 * 118.13178 * 14 5 4 37 37 H 1.09001 * 109.87735 * 239.29335 * 14 5 4 38 38 H 0.97002 * 120.00383 * 88.69522 * 17 15 14 39 39 H 1.07998 * 126.38983 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4640 -1.5667 -1.6071 7 1 4.3318 -1.5164 -2.6778 8 6 5.6831 -1.9654 -1.0762 9 7 5.8440 -2.0270 0.2286 10 14 7.0951 -2.4142 -2.2138 11 1 6.6604 -2.2636 -3.6256 12 1 8.2472 -1.5148 -1.9515 13 1 7.5001 -3.8217 -1.9684 14 6 3.4656 -1.2794 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4467 -1.6631 1.4210 17 7 2.2286 0.0496 2.3815 18 6 2.2003 -0.4916 3.6155 19 8 2.0562 -1.6911 3.7501 20 6 2.3434 0.3730 4.8046 21 7 2.5039 1.6813 4.8083 22 7 2.5948 2.1109 6.0156 23 1 2.7162 3.0402 6.2661 24 6 2.4970 1.0830 6.8857 25 6 2.3298 -0.0451 6.1563 26 6 2.1668 -1.4507 6.6747 27 9 2.2083 -1.4398 8.0730 28 9 0.9376 -1.9652 6.2486 29 9 3.2032 -2.2520 6.1836 30 1 -0.3634 -1.0267 0.0439 31 1 -0.3634 0.5514 0.8672 32 1 -0.3633 0.4755 -0.9112 33 1 2.1560 -0.1720 -2.0837 34 1 1.4525 -1.6704 -1.4043 35 1 6.6960 -2.3053 0.5996 36 1 3.6600 -2.2964 1.0366 37 1 4.2423 -0.6085 1.0631 38 1 2.3432 1.0068 2.2742 39 1 2.5398 1.1489 7.9628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079831308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:42 Heat of formation + Delta-G solvation = -80.296723 kcal Electronic energy + Delta-G solvation = -29348.014984 eV Core-core repulsion = 24685.419628 eV Total energy + Delta-G solvation = -4662.595355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90685 -47.50308 -47.27925 -43.14642 -39.35950 -37.43050 -33.93670 -32.82480 -32.63422 -31.49481 -30.32917 -27.88190 -26.16768 -25.61652 -24.54763 -23.17719 -21.58471 -20.56916 -20.00263 -19.62953 -19.14633 -18.24085 -18.04858 -17.10685 -16.88489 -16.78702 -16.07588 -15.78978 -14.91576 -14.33792 -14.25800 -14.23283 -14.12385 -13.85645 -13.78202 -13.62141 -13.48646 -13.46458 -13.08291 -12.73972 -12.65626 -12.44000 -11.92932 -11.67185 -11.35167 -11.30009 -10.98614 -10.75883 -10.62775 -10.35690 -9.97825 -9.92549 -9.89629 -9.85086 -9.80990 -9.64640 -8.59040 -8.45085 -6.78862 -5.64710 -2.99985 1.28500 1.37234 2.25407 2.86382 3.32838 3.43792 3.47577 3.48830 3.51862 3.74536 4.02729 4.36060 4.54377 4.56581 4.61367 4.85338 5.10603 5.21826 5.35744 5.48523 5.58457 5.60718 5.79883 6.03138 6.03907 6.19578 6.23234 6.38149 6.42646 6.52624 6.66565 6.76274 6.96906 7.27353 7.60824 7.63350 7.88186 7.91701 8.30124 8.47641 9.26122 9.86939 10.51829 11.46047 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003590 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.186639 B = 7797.101064 C = 8582.337256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.119 3.881 16 H 0.093 0.907 17 N -0.692 5.692 18 C 0.591 3.409 19 O -0.512 6.512 20 C 0.051 3.949 21 N -0.248 5.248 22 N -0.376 5.376 23 H 0.454 0.546 24 C 0.056 3.944 25 C -0.258 4.258 26 C 0.550 3.450 27 F -0.186 7.186 28 F -0.166 7.166 29 F -0.161 7.161 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.252 0.748 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.402 0.598 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.313 11.051 15.488 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.111 0.889 17 N -0.342 5.342 18 C 0.373 3.627 19 O -0.385 6.385 20 C -0.112 4.112 21 N -0.082 5.082 22 N -0.088 5.088 23 H 0.300 0.700 24 C -0.092 4.092 25 C -0.271 4.271 26 C 0.495 3.505 27 F -0.168 7.168 28 F -0.148 7.148 29 F -0.143 7.143 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.237 0.763 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.108 10.953 14.837 21.030 hybrid contribution 0.985 -0.055 0.321 1.038 sum -9.123 10.897 15.158 20.779 Atomic orbital electron populations 1.21698 0.94993 1.01806 1.00989 1.22618 0.94871 0.99565 0.96272 0.90394 1.21580 0.87618 0.95057 0.94280 1.44413 1.07886 1.79206 1.01769 1.19095 0.89274 1.38514 0.88942 0.90262 1.24826 0.97883 1.01717 0.95976 1.69983 1.24089 1.53293 1.09177 0.86056 0.82400 0.77804 0.79570 1.20508 1.21846 1.21740 1.21492 0.89975 1.00458 0.83396 1.22600 1.00637 0.92772 0.82533 0.88924 1.45716 1.72121 1.11462 1.04891 1.16755 0.77952 0.86417 0.81605 1.90880 1.48791 1.13351 1.85502 1.22043 1.05229 0.90047 0.93898 1.73714 1.18579 1.12123 1.03817 1.43325 1.51738 1.10808 1.02892 0.69976 1.22680 1.01886 0.86302 0.98322 1.20325 1.18395 0.94053 0.94303 1.16945 0.74862 0.84654 0.74065 1.93146 1.96359 1.96979 1.30285 1.93234 1.43621 1.88293 1.89613 1.93279 1.58218 1.75351 1.87408 0.92539 0.93148 0.92736 0.93962 0.95977 0.93761 0.93276 0.93019 0.76301 0.78313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.30 37.16 0.35 -1.52 16 2 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 3 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 4 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.71 3.39 -170.07 -0.58 -16.29 16 6 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.17 4.36 5.13 -3.06 -0.02 4.34 16 15 C 0.12 2.33 2.78 -66.10 -0.18 2.15 16 16 H 0.09 1.90 7.42 -51.93 -0.39 1.52 16 17 N -0.69 -11.91 5.10 -53.01 -0.27 -12.18 16 18 C 0.59 10.73 7.82 -12.39 -0.10 10.63 16 19 O -0.51 -10.97 14.13 5.31 0.07 -10.90 16 20 C 0.05 0.76 7.13 -82.77 -0.59 0.17 16 21 N -0.25 -2.90 11.92 33.42 0.40 -2.50 16 22 N -0.38 -2.70 6.83 30.47 0.21 -2.49 16 23 H 0.45 1.17 8.96 -190.44 -1.71 -0.54 16 24 C 0.06 0.43 11.49 -17.17 -0.20 0.23 16 25 C -0.26 -3.30 5.66 -104.40 -0.59 -3.89 16 26 C 0.55 7.86 2.85 36.01 0.10 7.96 16 27 F -0.19 -2.17 16.87 2.25 0.04 -2.13 16 28 F -0.17 -2.64 16.42 2.25 0.04 -2.60 16 29 F -0.16 -2.78 16.41 2.25 0.04 -2.74 16 30 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.05 1.44 7.53 -51.93 -0.39 1.05 16 37 H 0.05 1.44 7.24 -51.93 -0.38 1.06 16 38 H 0.40 6.03 8.29 -40.82 -0.34 5.69 16 39 H 0.20 0.65 8.02 -52.49 -0.42 0.23 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -35.91 342.34 -6.82 -42.73 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.69 Total: 0.02 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -1.78 Total: 13.76 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.33 Total: -60.82 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.11 Total: -7.48 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.91 -6.82 -42.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079831308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.565 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds