Wall clock time and date at job start Tue Mar 31 2020 16:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.91459 * 2 1 4 4 C 1.54907 * 111.00504 * 236.09801 * 2 1 3 5 5 N 1.47419 * 104.83203 * 204.91615 * 4 2 1 6 6 C 1.36939 * 125.64885 * 204.09072 * 5 4 2 7 7 H 1.07997 * 119.99728 * 359.72616 * 6 5 4 8 8 C 1.38815 * 119.99845 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99884 * 359.72042 * 8 6 5 10 10 Si 1.86798 * 119.99660 * 179.72678 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 119.99875 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99434 * 10 8 6 14 14 C 1.47023 * 108.70109 * 24.36071 * 5 4 2 15 15 C 1.54333 * 107.26879 * 358.57834 * 14 5 4 16 16 H 1.08998 * 110.51089 * 96.45611 * 15 14 5 17 17 N 1.46493 * 110.85255 * 219.67787 * 15 14 5 18 18 C 1.34776 * 120.00061 * 268.69412 * 17 15 14 19 19 O 1.21567 * 120.00064 * 359.97438 * 18 17 15 20 20 C 1.47712 * 120.00467 * 180.02562 * 18 17 15 21 21 N 1.31809 * 126.51087 * 0.02562 * 20 18 17 22 22 N 1.28471 * 110.07074 * 180.02562 * 21 20 18 23 23 H 0.97002 * 124.88359 * 180.02562 * 22 21 20 24 24 C 1.35035 * 110.23255 * 0.02562 * 22 21 20 25 25 C 1.35370 * 107.22515 * 359.72421 * 24 22 21 26 26 C 1.50700 * 127.24811 * 180.25435 * 25 24 22 27 27 F 1.39896 * 109.47105 * 0.19138 * 26 25 24 28 28 F 1.39902 * 109.46472 * 120.19180 * 26 25 24 29 29 F 1.39898 * 109.47108 * 240.18732 * 26 25 24 30 30 H 1.08997 * 109.47509 * 182.44635 * 1 2 3 31 31 H 1.09004 * 109.47376 * 302.45212 * 1 2 3 32 32 H 1.09007 * 109.46764 * 62.44384 * 1 2 3 33 33 H 1.09000 * 110.36937 * 86.07730 * 4 2 1 34 34 H 1.09004 * 110.46017 * 323.80418 * 4 2 1 35 35 H 0.97000 * 119.99517 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.88481 * 118.13178 * 14 5 4 37 37 H 1.09001 * 109.87735 * 239.29335 * 14 5 4 38 38 H 0.97002 * 120.00383 * 88.69522 * 17 15 14 39 39 H 1.07998 * 126.38983 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4640 -1.5667 -1.6071 7 1 4.3318 -1.5164 -2.6778 8 6 5.6831 -1.9654 -1.0762 9 7 5.8440 -2.0270 0.2286 10 14 7.0951 -2.4142 -2.2138 11 1 6.6604 -2.2636 -3.6256 12 1 8.2472 -1.5148 -1.9515 13 1 7.5001 -3.8217 -1.9684 14 6 3.4656 -1.2794 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4467 -1.6631 1.4210 17 7 2.2286 0.0496 2.3815 18 6 2.2003 -0.4916 3.6155 19 8 2.0562 -1.6911 3.7501 20 6 2.3434 0.3730 4.8046 21 7 2.5039 1.6813 4.8083 22 7 2.5948 2.1109 6.0156 23 1 2.7162 3.0402 6.2661 24 6 2.4970 1.0830 6.8857 25 6 2.3298 -0.0451 6.1563 26 6 2.1668 -1.4507 6.6747 27 9 2.2083 -1.4398 8.0730 28 9 0.9376 -1.9652 6.2486 29 9 3.2032 -2.2520 6.1836 30 1 -0.3634 -1.0267 0.0439 31 1 -0.3634 0.5514 0.8672 32 1 -0.3633 0.4755 -0.9112 33 1 2.1560 -0.1720 -2.0837 34 1 1.4525 -1.6704 -1.4043 35 1 6.6960 -2.3053 0.5996 36 1 3.6600 -2.2964 1.0366 37 1 4.2423 -0.6085 1.0631 38 1 2.3432 1.0068 2.2742 39 1 2.5398 1.1489 7.9628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079831308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:41 Heat of formation + Delta-G solvation = -107.646761 kcal Electronic energy + Delta-G solvation = -29349.200970 eV Core-core repulsion = 24685.419628 eV Total energy + Delta-G solvation = -4663.781342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.01646 -48.56991 -48.48797 -43.99362 -40.86116 -39.08411 -35.68191 -34.38747 -33.66101 -32.48511 -32.13074 -29.60970 -27.44611 -27.14076 -25.94410 -24.68347 -22.59563 -22.13108 -21.58191 -20.99593 -20.10932 -19.38063 -19.10871 -18.88494 -18.27624 -17.77921 -17.39605 -17.01442 -16.83629 -15.75297 -15.65282 -15.40688 -15.39380 -15.34842 -14.92762 -14.89001 -14.69137 -14.68086 -14.62420 -14.25907 -14.07464 -13.70784 -13.47252 -13.33399 -13.05021 -12.89299 -12.61001 -12.27892 -12.14817 -12.08742 -11.86221 -11.66865 -11.47252 -11.30726 -10.83957 -10.76008 -10.68353 -10.03695 -8.92578 -7.84388 -5.22542 0.22822 0.59674 1.44342 1.46639 1.49894 1.57015 1.82248 2.10309 2.19428 2.49658 2.73213 3.03510 3.34029 3.38363 3.49085 3.61595 3.75065 3.82171 3.98349 4.04763 4.10618 4.36166 4.49519 4.60281 4.64969 4.72235 4.89094 5.06420 5.08302 5.16259 5.28568 5.45205 5.50344 5.59434 5.76373 5.86990 6.16657 6.35839 6.60880 7.05101 7.11994 7.75730 8.39775 9.25245 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003590 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.186639 B = 7797.101064 C = 8582.337256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.091 0.909 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.240 4.240 7 H 0.090 0.910 8 C -0.070 4.070 9 N -0.954 5.954 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.296 1.296 14 C 0.189 3.811 15 C 0.135 3.865 16 H 0.080 0.920 17 N -0.684 5.684 18 C 0.585 3.415 19 O -0.556 6.556 20 C 0.018 3.982 21 N -0.247 5.247 22 N -0.347 5.347 23 H 0.478 0.522 24 C 0.099 3.901 25 C -0.292 4.292 26 C 0.547 3.453 27 F -0.169 7.169 28 F -0.182 7.182 29 F -0.187 7.187 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.244 0.756 36 H -0.009 1.009 37 H 0.017 0.983 38 H 0.415 0.585 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 14.033 16.086 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 H 0.110 0.890 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.108 0.892 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.809 3.191 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.224 1.224 14 C 0.062 3.938 15 C 0.029 3.971 16 H 0.098 0.902 17 N -0.335 5.335 18 C 0.369 3.631 19 O -0.432 6.432 20 C -0.144 4.144 21 N -0.083 5.083 22 N -0.063 5.063 23 H 0.330 0.670 24 C -0.049 4.049 25 C -0.304 4.304 26 C 0.491 3.509 27 F -0.150 7.150 28 F -0.163 7.163 29 F -0.169 7.169 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.009 0.991 37 H 0.035 0.965 38 H 0.252 0.748 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -11.253 14.013 15.413 23.676 hybrid contribution 1.313 -0.937 0.213 1.627 sum -9.940 13.075 15.625 22.670 Atomic orbital electron populations 1.21650 0.91617 1.02241 1.03093 1.22546 0.97376 0.98902 0.92487 0.89039 1.21854 0.85165 0.95854 0.96317 1.44734 1.09591 1.79209 1.01884 1.19579 0.90043 1.37435 0.89874 0.89181 1.25740 1.00755 1.02400 0.97395 1.70254 1.24112 1.54777 1.11218 0.84971 0.78844 0.76723 0.78580 1.18334 1.21836 1.22385 1.21097 0.92508 0.96541 0.83656 1.22172 0.96856 0.93627 0.84463 0.90225 1.45545 1.72034 1.11694 1.04201 1.17300 0.76664 0.86457 0.82662 1.90845 1.50613 1.15470 1.86310 1.21494 1.08761 0.90980 0.93213 1.73621 1.18109 1.10553 1.06016 1.43454 1.49177 1.12091 1.01551 0.67029 1.23334 0.97444 0.84096 1.00012 1.20362 1.21395 0.94439 0.94193 1.17156 0.73711 0.85239 0.74744 1.93165 1.96217 1.96941 1.28717 1.93195 1.44466 1.88701 1.89929 1.93223 1.59348 1.76372 1.87930 0.92980 0.91465 0.90196 0.92424 0.95498 0.94691 0.99064 0.96461 0.74830 0.73079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.30 71.98 0.67 -2.47 16 2 C -0.09 -3.06 3.27 -9.40 -0.03 -3.09 16 3 H 0.09 2.78 8.01 -2.39 -0.02 2.76 16 4 C 0.13 5.38 6.70 86.86 0.58 5.96 16 5 N -0.63 -33.48 3.39 -691.98 -2.35 -35.83 16 6 C -0.24 -13.88 10.28 84.03 0.86 -13.01 16 7 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 8 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 9 N -0.95 -61.24 10.31 21.65 0.22 -61.02 16 10 Si 0.98 47.45 29.55 68.60 2.03 49.47 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 13 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 14 C 0.19 10.12 5.13 86.73 0.45 10.57 16 15 C 0.13 5.45 2.78 46.18 0.13 5.58 16 16 H 0.08 3.45 7.42 -2.39 -0.02 3.43 16 17 N -0.68 -24.15 5.10 -439.91 -2.25 -26.39 16 18 C 0.58 22.13 7.82 86.75 0.68 22.80 16 19 O -0.56 -25.48 14.13 -3.93 -0.06 -25.54 16 20 C 0.02 0.51 7.13 42.46 0.30 0.81 16 21 N -0.25 -5.26 11.92 -48.18 -0.57 -5.83 16 22 N -0.35 -3.62 6.83 -57.51 -0.39 -4.01 16 23 H 0.48 0.11 8.96 -219.99 -1.97 -1.86 16 24 C 0.10 1.13 11.49 83.54 0.96 2.09 16 25 C -0.29 -7.07 5.66 -19.72 -0.11 -7.19 16 26 C 0.55 15.70 2.85 71.24 0.20 15.90 16 27 F -0.17 -3.70 16.87 44.97 0.76 -2.94 16 28 F -0.18 -5.95 16.42 44.97 0.74 -5.21 16 29 F -0.19 -6.80 16.41 44.97 0.74 -6.07 16 30 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.03 1.08 8.04 -2.38 -0.02 1.06 16 35 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 36 H -0.01 -0.57 7.53 -2.39 -0.02 -0.59 16 37 H 0.02 1.03 7.24 -2.39 -0.02 1.01 16 38 H 0.41 12.31 8.29 -92.71 -0.77 11.55 16 39 H 0.25 0.07 8.02 -2.91 -0.02 0.05 16 Total: -1.00 -86.24 342.34 2.42 -83.82 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.61 Total: 5.31 kcal Atomic # 6 Polarization: 29.09 SS G_CDS: 5.16 Total: 34.24 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.34 Total: -133.09 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.23 Total: -14.22 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -86.24 2.42 -83.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079831308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.826 kcal (2) G-P(sol) polarization free energy of solvation -86.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds