Wall clock time and date at job start Tue Mar 31 2020 17:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 119.99836 * 2 1 3 5 5 C 1.36934 * 120.00548 * 275.00076 * 4 2 1 6 6 H 1.07999 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00389 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00377 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46915 * 59.99480 * 9 7 5 11 11 H 1.48495 * 109.47422 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47142 * 300.00141 * 9 7 5 13 13 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 14 14 H 1.09002 * 109.46830 * 299.99492 * 13 2 1 15 15 C 1.53000 * 109.47187 * 180.02562 * 13 2 1 16 16 N 1.46496 * 109.47630 * 59.99640 * 13 2 1 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 2 18 18 O 1.21552 * 120.00341 * 359.97438 * 17 16 13 19 19 C 1.47836 * 119.99800 * 179.97438 * 17 16 13 20 20 C 1.39948 * 120.93999 * 359.72080 * 19 17 16 21 21 N 1.32146 * 118.92157 * 179.76323 * 20 19 17 22 22 C 1.31872 * 120.96687 * 0.52033 * 21 20 19 23 23 C 1.50706 * 118.95337 * 179.74453 * 22 21 20 24 24 F 1.39898 * 109.47064 * 284.98464 * 23 22 21 25 25 F 1.39906 * 109.46376 * 44.98017 * 23 22 21 26 26 F 1.39894 * 109.47310 * 164.97642 * 23 22 21 27 27 N 1.31866 * 122.09911 * 359.72677 * 22 21 20 28 28 C 1.32149 * 120.96517 * 0.02562 * 27 22 21 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 31 31 H 1.09002 * 109.47254 * 60.00358 * 1 2 3 32 32 H 0.96999 * 119.99694 * 95.00601 * 4 2 1 33 33 H 0.97001 * 120.00669 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47302 * 59.99702 * 15 13 2 35 35 H 1.09006 * 109.47229 * 180.02562 * 15 13 2 36 36 H 1.09002 * 109.46821 * 299.99498 * 15 13 2 37 37 H 0.96999 * 119.99694 * 24.99795 * 16 13 2 38 38 H 1.07995 * 120.54067 * 359.97438 * 20 19 17 39 39 H 1.07995 * 120.54396 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6617 3.5089 8 7 2.9263 -1.9386 3.4497 9 14 2.7901 0.2699 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.2991 -0.6485 6.1683 12 1 3.7444 1.3931 4.9372 13 6 2.0400 -0.7211 -1.2493 14 1 1.6767 -1.7488 -1.2493 15 6 3.5700 -0.7217 -1.2489 16 7 1.5517 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6064 18 8 1.7124 -1.8822 -3.6612 19 6 0.9296 -0.0061 -4.8133 20 6 0.5851 1.3497 -4.7711 21 7 0.1530 1.9340 -5.8748 22 6 0.0351 1.2562 -6.9998 23 6 -0.4679 1.9664 -8.2301 24 9 -1.8481 2.1672 -8.1212 25 9 0.1752 3.2031 -8.3501 26 9 -0.1975 1.1886 -9.3610 27 7 0.3435 -0.0232 -7.0827 28 6 0.7880 -0.6852 -6.0288 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 3.2497 -2.3959 4.2416 34 1 3.9330 -1.2358 -0.3590 35 1 3.9334 -1.2351 -2.1392 36 1 3.9337 0.3059 -1.2487 37 1 1.3209 0.9106 -2.4018 38 1 0.6743 1.9102 -3.8523 39 1 1.0390 -1.7328 -6.1045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674680607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:34 Heat of formation + Delta-G solvation = -118.579499 kcal Electronic energy + Delta-G solvation = -27818.361890 eV Core-core repulsion = 23154.106469 eV Total energy + Delta-G solvation = -4664.255421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.63916 -48.16136 -48.11969 -42.00085 -39.84092 -36.99375 -34.86752 -34.15513 -33.52754 -31.81652 -29.81285 -28.55495 -28.02342 -25.45033 -24.45364 -24.09608 -22.90919 -21.02167 -20.35244 -19.60168 -19.26906 -19.07139 -18.26970 -17.94563 -17.28075 -16.07931 -15.93187 -15.75964 -15.08970 -14.92702 -14.82924 -14.76404 -14.52489 -14.51375 -14.24884 -14.23647 -14.20843 -13.75627 -13.53473 -13.30984 -13.18106 -12.55430 -12.28212 -12.04771 -11.85677 -11.72584 -11.34589 -11.08650 -10.90919 -10.81487 -10.54635 -10.34071 -10.30782 -10.17836 -10.03160 -9.77956 -9.24583 -8.96675 -7.09973 -5.86404 -3.16958 -0.54044 0.24042 1.61632 2.24099 2.71809 2.84949 2.95598 3.02716 3.37420 3.42459 3.43529 3.66101 3.80851 3.88635 3.94110 4.05411 4.33706 4.51630 4.97890 5.10623 5.34343 5.36474 5.50983 5.59602 5.72979 5.93074 5.95321 5.97528 6.20636 6.26044 6.32576 6.43300 6.66708 6.74443 6.87802 6.93998 7.25419 7.59228 7.87658 8.30669 9.42409 9.95874 10.30623 11.35600 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.002148 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.477165 B =13034.561780 C =13521.872425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.717 5.717 5 C -0.243 4.243 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.134 3.866 14 H 0.091 0.909 15 C -0.154 4.154 16 N -0.704 5.704 17 C 0.563 3.437 18 O -0.520 6.520 19 C -0.202 4.202 20 C 0.187 3.813 21 N -0.478 5.478 22 C 0.250 3.750 23 C 0.548 3.452 24 F -0.161 7.161 25 F -0.157 7.157 26 F -0.153 7.153 27 N -0.478 5.478 28 C 0.212 3.788 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.397 0.603 38 H 0.189 0.811 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 7.381 -22.396 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.359 5.359 5 C -0.374 4.374 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.577 5.577 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.030 3.970 14 H 0.109 0.891 15 C -0.212 4.212 16 N -0.354 5.354 17 C 0.346 3.654 18 O -0.396 6.396 19 C -0.209 4.209 20 C 0.020 3.980 21 N -0.191 5.191 22 C -0.021 4.021 23 C 0.491 3.509 24 F -0.142 7.142 25 F -0.139 7.139 26 F -0.134 7.134 27 N -0.191 5.191 28 C 0.046 3.954 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.205 0.795 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.619 7.119 -23.088 24.805 hybrid contribution 0.223 0.358 1.604 1.658 sum -5.396 7.477 -21.484 23.379 Atomic orbital electron populations 1.22481 0.98993 1.01248 0.99910 1.20391 0.92170 0.95641 0.86022 0.92997 1.42264 1.78222 1.10686 1.04725 1.19117 1.37309 0.93886 0.87060 0.91165 1.24746 1.01799 0.95963 0.98095 1.69644 1.50283 1.08638 1.29169 0.86271 0.77791 0.78612 0.83489 1.21255 1.21670 1.21222 1.21508 0.94780 0.97755 0.82908 0.89139 1.22067 0.94400 1.02055 1.02674 1.46027 1.65807 1.13919 1.09681 1.17578 0.78764 0.86598 0.82419 1.90845 1.49562 1.14827 1.84406 1.22228 1.03692 0.96905 0.98121 1.23626 0.87219 0.90861 0.96252 1.68010 1.13127 1.39202 0.98741 1.22837 0.96851 0.89187 0.93239 1.17072 0.75823 0.76752 0.81233 1.93276 1.29975 1.94958 1.96002 1.93278 1.81358 1.43161 1.96067 1.93280 1.93453 1.74541 1.52147 1.68164 1.10984 1.07536 1.32394 1.23661 0.85857 1.00967 0.84959 0.93282 0.92407 0.94753 0.77984 0.93303 0.89710 0.93301 0.92872 0.76789 0.79472 0.78476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.33 37.16 0.35 -2.26 16 2 C 0.17 2.85 2.52 -67.94 -0.17 2.68 16 3 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -16.18 4.43 -53.43 -0.24 -16.41 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 8 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 9 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.13 1.97 2.20 -67.94 -0.15 1.82 16 14 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 15 C -0.15 -2.33 9.33 37.16 0.35 -1.98 16 16 N -0.70 -7.60 4.34 -54.76 -0.24 -7.84 16 17 C 0.56 6.40 7.75 -12.33 -0.10 6.30 16 18 O -0.52 -7.72 16.11 5.32 0.09 -7.64 16 19 C -0.20 -1.81 5.91 -104.69 -0.62 -2.43 16 20 C 0.19 1.44 10.81 -16.78 -0.18 1.26 16 21 N -0.48 -4.55 10.19 -10.39 -0.11 -4.66 16 22 C 0.25 2.52 7.09 -157.06 -1.11 1.41 16 23 C 0.55 5.20 3.49 36.01 0.13 5.32 16 24 F -0.16 -1.54 17.30 2.25 0.04 -1.50 16 25 F -0.16 -1.50 17.19 2.25 0.04 -1.46 16 26 F -0.15 -1.47 16.86 2.25 0.04 -1.43 16 27 N -0.48 -4.80 9.81 -10.39 -0.10 -4.90 16 28 C 0.21 1.91 10.88 -16.77 -0.18 1.73 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.41 7.45 -51.93 -0.39 0.03 16 32 H 0.39 9.45 7.58 -40.82 -0.31 9.14 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.10 6.52 -40.82 -0.27 2.84 16 38 H 0.19 0.82 6.54 -52.49 -0.34 0.48 16 39 H 0.20 1.49 7.74 -52.49 -0.41 1.08 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -30.50 352.55 -5.55 -36.05 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.15 Total: 7.02 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.94 Total: 7.13 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.04 Total: -59.83 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.12 Total: -4.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.50 -5.55 -36.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674680607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.528 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds