Wall clock time and date at job start Tue Mar 31 2020 17:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34257 * 125.75795 * 2 1 4 4 C 1.38050 * 107.41730 * 180.11056 * 3 2 1 5 5 C 1.47426 * 126.40891 * 179.87406 * 4 3 2 6 6 O 1.21616 * 119.99158 * 179.68760 * 5 4 3 7 7 N 1.34774 * 120.00786 * 359.68623 * 5 4 3 8 8 C 1.46502 * 120.00215 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46804 * 180.02562 * 8 7 5 10 10 C 1.30994 * 119.99826 * 125.27541 * 9 8 7 11 11 C 1.50702 * 120.00204 * 179.71900 * 10 9 8 12 12 N 1.46500 * 109.46883 * 124.99760 * 11 10 9 13 13 C 1.36943 * 119.99537 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99930 * 0.02562 * 13 12 11 15 15 C 1.38810 * 120.00004 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00422 * 180.02562 * 15 13 12 17 17 Si 1.86810 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47261 * 89.99809 * 17 15 13 19 19 H 1.48494 * 109.47034 * 210.00404 * 17 15 13 20 20 H 1.48509 * 109.46803 * 330.00181 * 17 15 13 21 21 C 1.41287 * 107.16841 * 359.60881 * 4 3 2 22 22 C 1.50698 * 125.98805 * 180.23984 * 21 4 3 23 23 F 1.39902 * 109.47208 * 89.99931 * 22 21 4 24 24 F 1.39899 * 109.47317 * 210.00094 * 22 21 4 25 25 F 1.39900 * 109.47162 * 330.00426 * 22 21 4 26 26 N 1.30443 * 108.02595 * 0.24210 * 21 4 3 27 27 H 1.08997 * 109.47330 * 270.31294 * 1 2 3 28 28 H 1.09010 * 109.47075 * 30.30605 * 1 2 3 29 29 H 1.08998 * 109.47362 * 150.30343 * 1 2 3 30 30 H 1.07997 * 126.29401 * 359.96242 * 3 2 1 31 31 H 0.96997 * 119.99865 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47066 * 59.99906 * 8 7 5 33 33 H 1.09001 * 109.47002 * 300.00046 * 8 7 5 34 34 H 1.08002 * 119.99761 * 304.99301 * 9 8 7 35 35 H 1.08002 * 120.00350 * 359.72370 * 10 9 8 36 36 H 1.08998 * 109.47600 * 245.00508 * 11 10 9 37 37 H 1.09004 * 109.46937 * 5.00335 * 11 10 9 38 38 H 0.96999 * 120.00357 * 0.02562 * 12 11 10 39 39 H 0.96992 * 120.00213 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6551 -0.0025 5 6 4.7638 1.5060 -0.0061 6 8 5.8682 0.9967 -0.0023 7 7 4.6407 2.8481 -0.0135 8 6 5.8371 3.6935 -0.0176 9 6 5.4274 5.1437 -0.0250 10 6 5.8796 5.9568 0.8971 11 6 5.4749 7.4084 0.8860 12 7 4.8906 7.7623 2.1819 13 6 4.4465 9.0380 2.4072 14 1 4.5267 9.7830 1.6294 15 6 3.8932 9.3736 3.6353 16 7 3.4659 10.5995 3.8517 17 14 3.7539 8.0848 4.9804 18 1 4.9851 8.1005 5.8105 19 1 2.5771 8.3860 5.8345 20 1 3.5887 6.7432 4.3653 21 6 3.5310 -0.7575 0.0051 22 6 4.7320 -1.6677 0.0106 23 9 5.1031 -1.9422 1.3313 24 9 4.4140 -2.8633 -0.6425 25 9 5.7940 -1.0426 -0.6517 26 7 2.2826 -1.1357 0.0065 27 1 -0.3634 0.0056 1.0276 28 1 -0.3634 0.8873 -0.5186 29 1 -0.3634 -0.8927 -0.5091 30 1 1.9167 2.1169 -0.0006 31 1 3.7598 3.2542 -0.0161 32 1 6.4308 3.4786 -0.9061 33 1 6.4300 3.4883 0.8738 34 1 4.7645 5.5135 -0.7933 35 1 6.5425 5.5870 1.6653 36 1 6.3519 8.0288 0.7012 37 1 4.7399 7.5747 0.0984 38 1 4.8182 7.0932 2.8804 39 1 3.0790 10.8339 4.7097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754175219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:35 Heat of formation + Delta-G solvation = -93.864346 kcal Electronic energy + Delta-G solvation = -27573.591352 eV Core-core repulsion = 22910.407660 eV Total energy + Delta-G solvation = -4663.183692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.19653 -48.77770 -48.62673 -42.79694 -40.31827 -37.72687 -36.27185 -34.91875 -34.45713 -32.98872 -31.81419 -29.49130 -28.87208 -26.74607 -25.61571 -23.87191 -23.24407 -22.16653 -21.55854 -20.90817 -19.66948 -19.61296 -19.35275 -19.23006 -18.22610 -17.06776 -16.97522 -16.79906 -16.56945 -16.22402 -15.83441 -15.62709 -15.56379 -15.33188 -15.10785 -15.00709 -14.87860 -14.81173 -14.78890 -14.45609 -14.18616 -13.85925 -13.70952 -13.70363 -13.43762 -13.35070 -12.93882 -12.76057 -12.40401 -12.16141 -11.92454 -11.75433 -11.17604 -11.03309 -11.02881 -10.39087 -10.14628 -9.85212 -9.27681 -8.01996 -5.36201 0.27356 0.33473 0.79836 1.07808 1.39848 1.43846 1.51145 1.68554 2.22073 2.32287 2.49738 2.52426 2.83878 3.25123 3.29797 3.48509 3.63658 3.70667 3.95111 4.01144 4.11326 4.17570 4.37807 4.40607 4.52075 4.62570 4.71495 4.72090 4.79616 4.94828 5.04572 5.35667 5.58129 5.70308 5.73822 5.88212 5.94461 6.21966 6.55702 7.08652 7.22659 7.84094 8.03775 9.19330 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.002411 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.370610 B =11610.072917 C =12389.770695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.333 5.333 3 C 0.140 3.860 4 C -0.278 4.278 5 C 0.583 3.417 6 O -0.567 6.567 7 N -0.706 5.706 8 C 0.158 3.842 9 C -0.154 4.154 10 C -0.138 4.138 11 C 0.176 3.824 12 N -0.756 5.756 13 C -0.237 4.237 14 H 0.058 0.942 15 C -0.064 4.064 16 N -0.984 5.984 17 Si 0.957 3.043 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.247 1.247 21 C 0.016 3.984 22 C 0.549 3.451 23 F -0.176 7.176 24 F -0.174 7.174 25 F -0.148 7.148 26 N -0.266 5.266 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.102 0.898 30 H 0.248 0.752 31 H 0.415 0.585 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.032 0.968 37 H 0.039 0.961 38 H 0.367 0.633 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -26.456 -11.641 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.112 5.112 3 C -0.012 4.012 4 C -0.294 4.294 5 C 0.370 3.630 6 O -0.447 6.447 7 N -0.358 5.358 8 C 0.035 3.965 9 C -0.173 4.173 10 C -0.157 4.157 11 C 0.051 3.949 12 N -0.402 5.402 13 C -0.368 4.368 14 H 0.076 0.924 15 C -0.256 4.256 16 N -0.634 5.634 17 Si 0.784 3.216 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.171 1.171 21 C -0.152 4.152 22 C 0.492 3.508 23 F -0.157 7.157 24 F -0.155 7.155 25 F -0.129 7.129 26 N -0.090 5.090 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.120 0.880 30 H 0.264 0.736 31 H 0.252 0.748 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.200 0.800 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.411 -27.620 -11.720 30.906 hybrid contribution 0.364 0.446 1.057 1.203 sum -7.047 -27.175 -10.663 30.030 Atomic orbital electron populations 1.22732 0.69083 1.07801 1.06362 1.48891 1.09101 1.02305 1.50910 1.23931 0.87846 0.96002 0.93402 1.20079 0.94843 0.91202 1.23238 1.17373 0.87474 0.82250 0.75928 1.90872 1.28063 1.74107 1.51628 1.45607 1.10889 1.04418 1.74906 1.20256 0.87131 0.86556 1.02529 1.22799 1.01505 0.93271 0.99721 1.23009 0.99364 0.94725 0.98612 1.19880 0.95767 0.92078 0.87203 1.42676 1.74908 1.08858 1.13787 1.19061 1.31610 0.87748 0.98412 0.92416 1.25537 1.01221 0.98460 1.00354 1.69883 1.48625 1.20093 1.24832 0.85387 0.77129 0.79959 0.79156 1.20844 1.22157 1.17122 1.22045 0.92922 0.93858 1.06347 1.17002 0.81945 0.77597 0.74236 1.93211 1.92336 1.93959 1.36195 1.93209 1.92859 1.48145 1.81321 1.93369 1.57477 1.81570 1.80449 1.77123 0.99828 1.10044 1.21971 0.87967 0.84467 0.87953 0.73615 0.74782 0.90230 0.91899 0.84764 0.86835 0.95038 0.94320 0.79952 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.03 11.44 127.77 1.46 1.49 16 2 N -0.33 -3.52 3.98 -367.78 -1.46 -4.98 16 3 C 0.14 1.28 10.99 84.28 0.93 2.20 16 4 C -0.28 -5.27 6.09 -20.15 -0.12 -5.40 16 5 C 0.58 13.24 7.77 86.66 0.67 13.92 16 6 O -0.57 -17.63 13.26 -4.08 -0.05 -17.68 16 7 N -0.71 -11.84 5.54 -470.09 -2.60 -14.44 16 8 C 0.16 3.03 6.11 85.63 0.52 3.55 16 9 C -0.15 -2.99 9.24 25.65 0.24 -2.75 16 10 C -0.14 -3.52 9.24 25.65 0.24 -3.29 16 11 C 0.18 6.09 6.70 85.63 0.57 6.67 16 12 N -0.76 -33.67 5.40 -347.16 -1.87 -35.54 16 13 C -0.24 -13.18 10.47 84.03 0.88 -12.30 16 14 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 15 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 16 N -0.98 -61.87 13.97 21.65 0.30 -61.57 16 17 Si 0.96 43.90 27.74 68.60 1.90 45.80 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 21 C 0.02 0.36 6.60 43.51 0.29 0.65 16 22 C 0.55 14.24 3.37 71.24 0.24 14.48 16 23 F -0.18 -4.78 17.30 44.97 0.78 -4.00 16 24 F -0.17 -4.30 17.25 44.97 0.78 -3.52 16 25 F -0.15 -4.32 13.56 44.97 0.61 -3.71 16 26 N -0.27 -5.27 12.43 -46.68 -0.58 -5.85 16 27 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.14 -0.87 8.14 -2.38 -0.02 -0.89 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.03 16 30 H 0.25 -0.44 7.46 -2.91 -0.02 -0.46 16 31 H 0.42 4.09 7.39 -92.71 -0.68 3.41 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.38 7.79 -2.39 -0.02 1.36 16 34 H 0.13 2.21 7.84 -2.91 -0.02 2.19 16 35 H 0.11 2.84 7.84 -2.91 -0.02 2.82 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.30 7.79 -2.38 -0.02 1.29 16 38 H 0.37 15.51 5.52 -92.71 -0.51 15.00 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.57 353.39 4.05 -78.52 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -0.13 Total: 10.98 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.38 Total: 16.00 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -6.22 Total: -122.38 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 9 Polarization: -13.40 SS G_CDS: 2.16 Total: -11.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.80 kcal Total: -82.57 4.05 -78.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754175219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.342 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds