Wall clock time and date at job start Tue Mar 31 2020 16:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36929 * 120.00207 * 2 1 4 4 H 1.08001 * 120.00398 * 160.18928 * 3 2 1 5 5 C 1.38811 * 120.00175 * 339.91898 * 3 2 1 6 6 N 1.31615 * 119.99907 * 347.51904 * 5 3 2 7 7 Si 1.86799 * 120.00296 * 167.50951 * 5 3 2 8 8 H 1.48504 * 109.46885 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47148 * 120.00373 * 7 5 3 10 10 H 1.48502 * 109.47586 * 240.00211 * 7 5 3 11 11 C 1.46505 * 119.99770 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.88579 * 177.57137 * 11 2 1 13 13 C 1.55162 * 111.00454 * 53.65093 * 11 2 1 14 14 C 1.54327 * 102.93707 * 206.42234 * 13 11 2 15 15 N 1.47022 * 107.27369 * 22.19549 * 14 13 11 16 16 C 1.34773 * 125.64468 * 181.02364 * 15 14 13 17 17 O 1.21652 * 119.99414 * 180.02562 * 16 15 14 18 18 C 1.47067 * 120.00417 * 0.03885 * 16 15 14 19 19 C 1.36060 * 127.13790 * 0.02562 * 18 16 15 20 20 O 1.33794 * 109.85310 * 179.97438 * 19 18 16 21 21 C 1.34946 * 111.34481 * 0.02562 * 20 19 18 22 22 C 1.38969 * 133.07699 * 179.97438 * 21 20 19 23 23 C 1.37833 * 120.00555 * 179.97438 * 22 21 20 24 24 C 1.38885 * 120.62977 * 359.97438 * 23 22 21 25 25 F 1.35095 * 119.92194 * 180.02562 * 24 23 22 26 26 C 1.38040 * 120.14636 * 0.02562 * 24 23 22 27 27 C 1.39123 * 119.60879 * 359.69356 * 26 24 23 28 28 C 1.47421 * 108.70160 * 1.05360 * 15 14 13 29 29 H 1.09000 * 109.47115 * 84.83883 * 1 2 3 30 30 H 1.08997 * 109.47201 * 204.83823 * 1 2 3 31 31 H 1.09001 * 109.47050 * 324.84099 * 1 2 3 32 32 H 0.97000 * 120.00684 * 179.97438 * 6 5 3 33 33 H 1.08997 * 110.71795 * 324.78168 * 13 11 2 34 34 H 1.08994 * 110.71949 * 88.06156 * 13 11 2 35 35 H 1.08998 * 109.87926 * 262.77077 * 14 13 11 36 36 H 1.08997 * 110.00577 * 141.68435 * 14 13 11 37 37 H 1.08005 * 125.07881 * 0.02562 * 19 18 16 38 38 H 1.07999 * 119.99681 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.68532 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.19443 * 179.97438 * 26 24 23 41 41 H 1.08998 * 110.36529 * 217.03265 * 28 15 14 42 42 H 1.09003 * 110.36380 * 94.71752 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1817 1.2135 0.3170 5 6 1.5190 2.3515 -0.4127 6 7 0.3587 2.2885 -1.0308 7 14 2.3168 4.0095 -0.0907 8 1 3.6084 3.8087 0.6141 9 1 2.5604 4.7008 -1.3822 10 1 1.4162 4.8371 0.7514 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0966 -0.0436 13 6 1.7320 -2.1792 -1.1676 14 6 2.0380 -3.5977 -0.6425 15 7 2.0990 -3.5165 0.8242 16 6 2.3641 -4.5423 1.6572 17 8 2.3884 -4.3586 2.8596 18 6 2.6241 -5.8835 1.1128 19 6 2.6342 -6.2505 -0.1973 20 8 2.9102 -7.5555 -0.3016 21 6 3.0945 -8.1170 0.9116 22 6 3.3944 -9.4099 1.3234 23 6 3.5261 -9.6927 2.6660 24 6 3.3625 -8.6952 3.6185 25 9 3.4953 -8.9882 4.9306 26 6 3.0644 -7.4054 3.2275 27 6 2.9354 -7.1098 1.8741 28 6 1.8216 -2.1275 1.2327 29 1 -0.3633 0.0924 -1.0235 30 1 -0.3633 -0.9326 0.4317 31 1 -0.3633 0.8402 0.5918 32 1 -0.0823 3.1029 -1.3190 33 1 0.6642 -2.0573 -1.3495 34 1 2.3045 -1.9707 -2.0713 35 1 2.9956 -3.9397 -1.0351 36 1 1.2475 -4.2852 -0.9431 37 1 2.4482 -5.5872 -1.0292 38 1 3.5250 -10.1931 0.5913 39 1 3.7596 -10.6992 2.9802 40 1 2.9366 -6.6293 3.9675 41 1 2.4387 -1.8532 2.0883 42 1 0.7650 -2.0062 1.4716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980271663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:49 Heat of formation + Delta-G solvation = -4.284496 kcal Electronic energy + Delta-G solvation = -27749.561271 eV Core-core repulsion = 23612.198831 eV Total energy + Delta-G solvation = -4137.362439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.13439 -42.95097 -39.77685 -38.05361 -37.42547 -34.97558 -33.31814 -31.75559 -30.47931 -29.97006 -29.87604 -27.84005 -26.13534 -24.82774 -23.87954 -22.87483 -22.56440 -21.95787 -19.64322 -19.43050 -18.44089 -17.58656 -17.21169 -17.14552 -16.70330 -16.01263 -15.88887 -15.71835 -15.46122 -15.13619 -14.70541 -14.34099 -13.99824 -13.78219 -13.64951 -13.52479 -13.11409 -12.96564 -12.77895 -12.53913 -12.50171 -12.24226 -12.03564 -11.41408 -11.33346 -10.99575 -10.85275 -10.59898 -10.53566 -10.52553 -10.31039 -10.02818 -9.93717 -9.85805 -8.88588 -8.71847 -8.65039 -8.46976 -6.91779 -5.82017 -3.27566 0.33271 0.75523 1.43104 2.24437 2.96609 3.00245 3.33393 3.38083 3.41494 3.43168 3.75608 4.07567 4.18065 4.41253 4.43472 4.65390 4.68246 4.81688 4.85843 5.03865 5.07657 5.17289 5.31967 5.35420 5.50715 5.60866 5.62132 5.68382 5.75659 5.78347 5.86793 5.90005 6.18551 6.21634 6.24981 6.40205 6.53199 6.63729 6.70105 6.76730 7.32092 7.59299 7.63600 7.73917 8.20481 8.27966 9.12823 9.74841 10.21445 11.22731 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.002386 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.067267 B =11731.285339 C =12361.021946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.087 3.913 15 N -0.606 5.606 16 C 0.596 3.404 17 O -0.538 6.538 18 C -0.219 4.219 19 C 0.060 3.940 20 O -0.180 6.180 21 C 0.035 3.965 22 C -0.074 4.074 23 C -0.128 4.128 24 C 0.086 3.914 25 F -0.135 7.135 26 C -0.095 4.095 27 C -0.065 4.065 28 C 0.086 3.914 29 H 0.032 0.968 30 H 0.000 1.000 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -23.313 0.150 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.036 4.036 15 N -0.340 5.340 16 C 0.386 3.614 17 O -0.417 6.417 18 C -0.223 4.223 19 C -0.008 4.008 20 O -0.079 6.079 21 C -0.012 4.012 22 C -0.092 4.092 23 C -0.146 4.146 24 C 0.067 3.933 25 F -0.113 7.113 26 C -0.114 4.114 27 C -0.067 4.067 28 C -0.037 4.037 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.376 -23.244 0.601 23.660 hybrid contribution 0.249 1.033 0.290 1.101 sum 4.625 -22.211 0.891 22.705 Atomic orbital electron populations 1.20847 0.82184 0.95729 0.99659 1.43854 1.02011 0.99812 1.84911 1.19291 0.96765 0.84736 1.38052 0.91008 1.24983 0.97532 0.98504 0.98490 1.70088 1.16992 1.26819 1.41258 0.86143 0.78671 0.83961 0.77502 1.20258 1.21700 1.21535 1.21401 0.96518 0.85855 0.89957 0.90199 1.23249 1.03216 0.91904 1.00709 1.22418 1.00264 1.00365 0.80597 1.48286 1.68890 1.09866 1.06936 1.16643 0.77334 0.81935 0.85528 1.90790 1.52816 1.83857 1.14186 1.20971 1.13874 0.94597 0.92880 1.25540 0.94830 0.81742 0.98681 1.83906 1.72044 1.22139 1.29822 1.19587 1.04487 0.94824 0.82258 1.19719 1.01721 0.92353 0.95438 1.20885 1.02786 0.99747 0.91232 1.17414 1.04086 0.93537 0.78299 1.91519 1.93520 1.93877 1.32411 1.20613 0.99554 0.95749 0.95467 1.19114 1.02505 0.91736 0.93348 1.23090 1.01547 0.78456 1.00656 0.94965 0.98145 0.93361 0.93677 0.90161 0.90129 0.91356 0.91521 0.75356 0.83699 0.83326 0.83080 0.90612 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.59 59.85 0.45 4.15 16 2 N -0.59 -13.65 2.96 -171.03 -0.51 -14.16 16 3 C -0.26 -6.76 9.65 -15.06 -0.15 -6.91 16 4 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -25.29 10.51 55.49 0.58 -24.71 16 7 Si 0.91 21.22 29.57 -169.99 -5.03 16.19 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.22 3.54 -65.78 -0.23 2.99 16 12 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 13 C -0.15 -2.22 6.51 -24.89 -0.16 -2.38 16 14 C 0.09 1.00 5.01 -3.06 -0.02 0.98 16 15 N -0.61 -9.12 3.33 -171.92 -0.57 -9.69 16 16 C 0.60 9.59 7.83 -12.68 -0.10 9.50 16 17 O -0.54 -10.51 16.54 5.23 0.09 -10.42 16 18 C -0.22 -2.87 6.28 -103.25 -0.65 -3.52 16 19 C 0.06 0.59 10.57 29.95 0.32 0.90 16 20 O -0.18 -1.81 10.53 5.26 0.06 -1.75 16 21 C 0.04 0.37 7.39 -38.57 -0.28 0.09 16 22 C -0.07 -0.59 10.06 -39.46 -0.40 -0.99 16 23 C -0.13 -1.03 9.99 -39.49 -0.39 -1.43 16 24 C 0.09 0.92 7.30 -39.41 -0.29 0.64 16 25 F -0.13 -1.52 17.26 2.25 0.04 -1.48 16 26 C -0.10 -1.20 9.86 -39.33 -0.39 -1.59 16 27 C -0.07 -0.84 6.29 -104.98 -0.66 -1.50 16 28 C 0.09 1.52 6.46 -2.53 -0.02 1.51 16 29 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 30 H 0.00 0.00 6.33 -51.93 -0.33 -0.33 16 31 H 0.05 1.23 7.12 -51.93 -0.37 0.86 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.08 1.27 7.08 -51.93 -0.37 0.91 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.62 6.88 -51.93 -0.36 0.26 16 36 H 0.07 0.61 7.03 -51.93 -0.37 0.25 16 37 H 0.23 1.51 4.34 -52.48 -0.23 1.28 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.15 2.08 7.53 -52.49 -0.40 1.69 16 41 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 42 H 0.07 1.33 6.33 -51.93 -0.33 1.00 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -31.52 347.90 -7.92 -39.44 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.77 Total: -1.09 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.05 Total: 2.43 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.50 Total: -48.56 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.14 Total: -12.17 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.52 -7.92 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980271663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.156 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds