Wall clock time and date at job start Tue Mar 31 2020 16:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00047 * 2 1 4 4 H 1.48504 * 109.47071 * 264.98719 * 3 2 1 5 5 H 1.48505 * 109.47292 * 24.98766 * 3 2 1 6 6 H 1.48497 * 109.47562 * 144.98718 * 3 2 1 7 7 C 1.38805 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00640 * 187.32192 * 7 2 1 9 9 N 1.36942 * 119.99958 * 7.32156 * 7 2 1 10 10 C 1.47427 * 125.64885 * 185.50587 * 9 7 2 11 11 C 1.55129 * 104.71812 * 155.81713 * 10 9 7 12 12 H 1.09007 * 110.90174 * 155.27376 * 11 10 9 13 13 N 1.46504 * 111.22548 * 279.17419 * 11 10 9 14 14 C 1.34775 * 119.99844 * 267.20863 * 13 11 10 15 15 O 1.21283 * 119.99987 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00046 * 180.02562 * 14 13 11 17 17 C 1.50703 * 109.47472 * 180.02562 * 16 14 13 18 18 C 1.41376 * 128.00646 * 269.68034 * 17 16 14 19 19 N 1.30171 * 106.39290 * 179.89560 * 18 17 16 20 20 O 1.20913 * 111.60568 * 0.38416 * 19 18 17 21 21 C 1.34043 * 111.57145 * 359.74872 * 20 19 18 22 22 C 1.55159 * 101.49043 * 37.29735 * 11 10 9 23 23 H 1.08992 * 110.71913 * 82.69405 * 22 11 10 24 24 N 1.46502 * 110.87147 * 205.89909 * 22 11 10 25 25 C 1.35310 * 125.87057 * 79.77386 * 24 22 11 26 26 C 1.35352 * 106.17498 * 179.90326 * 25 24 22 27 27 N 1.33766 * 106.49714 * 0.35430 * 26 25 24 28 28 N 1.28635 * 108.88415 * 359.77303 * 27 26 25 29 29 C 1.47024 * 125.64744 * 5.81040 * 9 7 2 30 30 H 0.96998 * 119.99527 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.36369 * 274.74211 * 10 9 7 32 32 H 1.08994 * 110.36800 * 37.06894 * 10 9 7 33 33 H 0.96994 * 120.00105 * 87.21654 * 13 11 10 34 34 H 1.09007 * 109.46649 * 300.00164 * 16 14 13 35 35 H 1.09001 * 109.47398 * 59.99400 * 16 14 13 36 36 H 1.08003 * 126.80068 * 0.02562 * 18 17 16 37 37 H 1.07999 * 126.77920 * 179.97438 * 21 20 19 38 38 H 1.07999 * 126.91093 * 0.02562 * 25 24 22 39 39 H 1.07997 * 126.74860 * 180.12183 * 26 25 24 40 40 H 1.08998 * 109.88611 * 300.44446 * 29 9 7 41 41 H 1.09003 * 109.88062 * 61.60582 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6037 1.9852 -1.3948 5 1 1.3988 2.6810 0.5914 6 1 3.4908 1.4732 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1197 9 7 1.3340 -2.3833 -0.1501 10 6 1.9255 -3.7303 -0.0543 11 6 0.7396 -4.6554 0.3253 12 1 0.9303 -5.6814 0.0102 13 7 0.4577 -4.5941 1.7617 14 6 1.0298 -5.4817 2.5992 15 8 1.7782 -6.3309 2.1637 16 6 0.7394 -5.4190 4.0766 17 6 1.4976 -6.5123 4.7845 18 6 1.0696 -7.8316 5.0584 19 7 2.0520 -8.4142 5.6829 20 8 2.9893 -7.6657 5.8348 21 6 2.7444 -6.4565 5.3106 22 6 -0.4175 -4.0274 -0.4958 23 1 -0.4001 -4.3876 -1.5244 24 7 -1.7128 -4.3087 0.1281 25 6 -2.2424 -3.6523 1.1862 26 6 -3.4415 -4.2319 1.4278 27 7 -3.5814 -5.2068 0.5226 28 7 -2.5403 -5.2263 -0.2326 29 6 -0.1010 -2.5180 -0.4403 30 1 -0.4849 0.8401 -0.0004 31 1 2.3495 -4.0274 -1.0135 32 1 2.6892 -3.7549 0.7230 33 1 -0.1407 -3.9148 2.1099 34 1 1.0506 -4.4500 4.4671 35 1 -0.3297 -5.5513 4.2428 36 1 0.1173 -8.2699 4.7988 37 1 3.4097 -5.6058 5.3086 38 1 -1.7986 -2.8299 1.7276 39 1 -4.1450 -3.9629 2.2018 40 1 -0.6850 -2.0456 0.3496 41 1 -0.3300 -2.0557 -1.4005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070006294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:28 Heat of formation + Delta-G solvation = 169.238265 kcal Electronic energy + Delta-G solvation = -28914.889902 eV Core-core repulsion = 24837.264687 eV Total energy + Delta-G solvation = -4077.625215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.01961 -43.04082 -39.90079 -37.96990 -34.70604 -34.23254 -33.54690 -32.28723 -31.87238 -30.82909 -29.52049 -28.66719 -27.40800 -25.03721 -23.25135 -22.85016 -22.30569 -22.08507 -20.86747 -20.25846 -20.02166 -18.14139 -17.79029 -17.60314 -17.14504 -16.72453 -16.17699 -15.60660 -15.33680 -15.16574 -14.72817 -14.69436 -14.21462 -13.98097 -13.54619 -13.42692 -13.21415 -13.14969 -12.75623 -12.30513 -12.19287 -11.80570 -11.55755 -11.39088 -11.34467 -11.30091 -11.00201 -10.72766 -10.65612 -10.46665 -10.32448 -10.08325 -9.96218 -9.73408 -9.46311 -9.20249 -9.03988 -8.85167 -7.21277 -6.03888 -3.41060 1.40010 1.86201 2.10999 2.53755 2.64903 2.81173 3.10729 3.23279 3.29618 3.30763 3.32209 4.16184 4.23381 4.52564 4.57244 4.61558 4.65838 4.81605 4.86326 5.02221 5.16585 5.18299 5.22952 5.23830 5.34497 5.41920 5.48765 5.49632 5.55856 5.74549 5.89116 6.01226 6.10249 6.31464 6.37286 6.54545 6.73672 6.90532 7.12651 7.42290 7.50931 7.85518 8.13876 8.23742 8.76508 8.84819 9.45966 10.05779 11.06908 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.004207 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.858878 B = 6654.654302 C = 8543.976168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.002 4.002 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.083 0.917 9 N -0.597 5.597 10 C 0.125 3.875 11 C 0.126 3.874 12 H 0.105 0.895 13 N -0.708 5.708 14 C 0.518 3.482 15 O -0.536 6.536 16 C -0.065 4.065 17 C -0.182 4.182 18 C 0.004 3.996 19 N -0.368 5.368 20 O 0.095 5.905 21 C -0.043 4.043 22 C 0.100 3.900 23 H 0.126 0.874 24 N -0.264 5.264 25 C -0.041 4.041 26 C -0.061 4.061 27 N -0.281 5.281 28 N -0.091 5.091 29 C 0.165 3.835 30 H 0.257 0.743 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.402 0.598 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.187 0.813 37 H 0.216 0.784 38 H 0.191 0.809 39 H 0.186 0.814 40 H 0.083 0.917 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -6.555 8.518 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.199 4.199 3 Si 0.746 3.254 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.324 5.324 10 C -0.003 4.003 11 C 0.019 3.981 12 H 0.122 0.878 13 N -0.361 5.361 14 C 0.304 3.696 15 O -0.413 6.413 16 C -0.105 4.105 17 C -0.186 4.186 18 C -0.175 4.175 19 N -0.072 5.072 20 O 0.031 5.969 21 C -0.125 4.125 22 C -0.004 4.004 23 H 0.143 0.857 24 N -0.057 5.057 25 C -0.192 4.192 26 C -0.218 4.218 27 N -0.147 5.147 28 N -0.071 5.071 29 C 0.039 3.961 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.204 0.796 37 H 0.233 0.767 38 H 0.208 0.792 39 H 0.203 0.797 40 H 0.101 0.899 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.322 -9.327 7.714 12.107 hybrid contribution 0.007 3.090 0.262 3.101 sum -0.315 -6.236 7.975 10.129 Atomic orbital electron populations 1.69811 1.04988 1.25792 1.56437 1.24795 0.95726 0.97913 1.01456 0.86081 0.78601 0.82851 0.77880 1.21370 1.21567 1.20592 1.19039 0.91060 0.81941 1.43929 0.89899 1.44308 1.03705 1.00347 1.84089 1.22098 0.93765 0.85313 0.99083 1.22535 0.94742 1.00758 0.80094 0.87758 1.45777 1.49246 1.33986 1.07046 1.20396 0.80187 0.80874 0.88179 1.90718 1.36038 1.36355 1.78148 1.19887 1.01591 0.97784 0.91254 1.20702 0.96207 0.96381 1.05313 1.24902 1.00501 0.92314 0.99744 1.73841 0.97007 1.17391 1.19009 1.84796 1.34554 1.18236 1.59288 1.25793 0.97654 0.90449 0.98609 1.23661 0.76456 1.02554 0.97717 0.85667 1.47331 1.15658 1.21659 1.21054 1.23651 0.97380 1.03263 0.94952 1.23511 0.97783 0.97553 1.02979 1.75049 1.15653 1.19068 1.04894 1.78260 0.96982 1.10433 1.21387 1.21673 0.87549 0.84253 1.02645 0.93276 0.94182 0.92425 0.76178 0.87070 0.87413 0.79561 0.76736 0.79189 0.79720 0.89914 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -23.13 10.46 55.49 0.58 -22.55 16 2 C 0.00 -0.05 5.45 -17.43 -0.09 -0.15 16 3 Si 0.92 19.78 29.56 -169.99 -5.02 14.75 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.23 -5.53 10.26 -15.06 -0.15 -5.68 16 8 H 0.08 1.95 7.84 -52.49 -0.41 1.54 16 9 N -0.60 -12.45 3.39 -169.93 -0.58 -13.03 16 10 C 0.12 2.18 6.95 -2.41 -0.02 2.16 16 11 C 0.13 1.94 3.29 -65.66 -0.22 1.72 16 12 H 0.10 1.63 7.54 -51.92 -0.39 1.24 16 13 N -0.71 -9.79 4.68 -51.61 -0.24 -10.03 16 14 C 0.52 7.12 7.82 -10.99 -0.09 7.04 16 15 O -0.54 -9.33 15.67 5.55 0.09 -9.24 16 16 C -0.06 -0.63 6.28 -29.03 -0.18 -0.82 16 17 C -0.18 -2.00 4.82 -104.42 -0.50 -2.51 16 18 C 0.00 0.05 12.16 -17.06 -0.21 -0.15 16 19 N -0.37 -4.92 12.07 30.35 0.37 -4.55 16 20 O 0.10 1.15 11.20 17.17 0.19 1.34 16 21 C -0.04 -0.44 12.26 29.74 0.36 -0.07 16 22 C 0.10 1.57 3.84 -66.09 -0.25 1.32 16 23 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 24 N -0.26 -4.11 3.15 -52.98 -0.17 -4.27 16 25 C -0.04 -0.57 8.49 -17.05 -0.14 -0.71 16 26 C -0.06 -0.82 12.05 -17.74 -0.21 -1.03 16 27 N -0.28 -4.69 12.41 30.23 0.38 -4.32 16 28 N -0.09 -1.58 13.16 60.35 0.79 -0.78 16 29 C 0.16 3.19 5.05 -3.06 -0.02 3.17 16 30 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 5.19 6.08 -40.82 -0.25 4.94 16 34 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.22 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.19 2.38 6.49 -52.49 -0.34 2.04 16 39 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.08 1.70 4.77 -51.93 -0.25 1.46 16 41 H 0.05 1.11 7.98 -51.93 -0.41 0.70 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -31.02 349.71 -4.64 -35.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.57 Total: 7.46 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.72 Total: 4.29 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 1.13 Total: -59.54 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.28 Total: -7.90 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.02 -4.64 -35.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070006294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.900 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds