Wall clock time and date at job start Tue Mar 31 2020 16:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35320 * 126.66312 * 2 1 4 4 C 1.42274 * 103.91678 * 180.11044 * 3 2 1 5 5 C 1.48336 * 126.93448 * 179.91290 * 4 3 2 6 6 O 1.21494 * 119.99933 * 359.70492 * 5 4 3 7 7 N 1.34777 * 119.99811 * 179.71121 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 C 1.50708 * 109.46996 * 179.97438 * 8 7 5 10 10 C 1.35352 * 126.75083 * 94.70748 * 9 8 7 11 11 N 1.35311 * 106.17146 * 179.85255 * 10 9 8 12 12 C 1.46497 * 125.86802 * 180.18535 * 11 10 9 13 13 C 1.53951 * 113.73936 * 14.03951 * 12 11 10 14 14 N 1.47821 * 86.03636 * 222.08386 * 13 12 11 15 15 C 1.36934 * 134.45454 * 204.64732 * 14 13 12 16 16 H 1.08003 * 119.99962 * 179.86419 * 15 14 13 17 17 C 1.38805 * 120.00139 * 359.86356 * 15 14 13 18 18 N 1.31620 * 120.00249 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47024 * 89.99781 * 19 17 15 21 21 H 1.48501 * 109.47461 * 210.00157 * 19 17 15 22 22 H 1.48498 * 109.46786 * 330.00093 * 19 17 15 23 23 C 1.47582 * 91.04693 * 24.54693 * 14 13 12 24 24 N 1.28715 * 108.26289 * 0.42201 * 11 10 9 25 25 N 1.28626 * 110.17989 * 359.73241 * 24 11 10 26 26 N 1.30981 * 106.12641 * 359.64730 * 4 3 2 27 27 O 1.20910 * 111.43698 * 0.22425 * 26 4 3 28 28 H 1.08999 * 109.47146 * 180.26019 * 1 2 3 29 29 H 1.08999 * 109.47314 * 300.25670 * 1 2 3 30 30 H 1.09001 * 109.47143 * 60.26121 * 1 2 3 31 31 H 1.08002 * 128.04189 * 0.02562 * 3 2 1 32 32 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47226 * 299.99334 * 8 7 5 34 34 H 1.08999 * 109.47406 * 59.99933 * 8 7 5 35 35 H 1.08000 * 126.91475 * 0.02562 * 10 9 8 36 36 H 1.09000 * 112.94557 * 145.63250 * 12 11 10 37 37 H 1.08998 * 113.77066 * 336.35004 * 13 12 11 38 38 H 1.09004 * 113.76763 * 107.74896 * 13 12 11 39 39 H 0.96996 * 120.00041 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.76804 * 221.15023 * 23 14 13 41 41 H 1.09005 * 113.86656 * 89.77421 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 -0.0027 5 6 4.9076 1.2842 -0.0056 6 8 4.9008 2.4991 -0.0113 7 7 6.0785 0.6168 -0.0020 8 6 7.3430 1.3564 -0.0043 9 6 8.4940 0.3835 0.0011 10 6 9.1709 -0.0763 -1.0770 11 7 10.1148 -0.9192 -0.5981 12 6 11.0941 -1.6564 -1.4004 13 6 11.2112 -1.1538 -2.8508 14 7 11.2611 -2.5810 -3.2328 15 6 11.7694 -3.2706 -4.3010 16 1 11.6753 -4.3457 -4.3440 17 6 12.4056 -2.5880 -5.3287 18 7 12.5207 -1.2779 -5.2762 19 14 13.0984 -3.5288 -6.7863 20 1 12.0588 -3.6439 -7.8405 21 1 14.2756 -2.8042 -7.3289 22 1 13.5114 -4.8862 -6.3482 23 6 10.5457 -2.9639 -2.0001 24 7 10.0013 -0.9658 0.6832 25 7 9.0437 -0.2000 1.0720 26 7 3.4761 -0.7657 0.0038 27 8 2.3072 -1.0749 0.0054 28 1 -0.3633 -1.0276 0.0047 29 1 -0.3634 0.5178 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0301 2.1272 0.0004 32 1 6.0838 -0.3531 0.0028 33 1 7.3979 1.9795 -0.8970 34 1 7.3968 1.9871 0.8830 35 1 8.9950 0.1803 -2.1113 36 1 12.0541 -1.7731 -0.8974 37 1 10.3226 -0.6340 -3.2088 38 1 12.1342 -0.6109 -3.0544 39 1 12.9656 -0.8010 -5.9942 40 1 10.9382 -3.8633 -1.5257 41 1 9.4609 -2.9777 -2.1059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094271263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:58 Heat of formation + Delta-G solvation = 187.930309 kcal Electronic energy + Delta-G solvation = -26843.128316 eV Core-core repulsion = 22766.313648 eV Total energy + Delta-G solvation = -4076.814667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.40338 -43.11220 -39.76201 -38.38520 -35.44096 -34.47988 -33.77938 -33.37665 -32.00077 -31.26988 -28.26241 -28.01389 -27.33364 -25.33521 -24.56081 -24.28349 -22.96772 -21.96726 -21.15015 -20.38243 -19.65216 -18.16198 -18.08845 -17.44433 -17.13128 -16.67701 -16.39381 -15.65830 -15.43607 -15.14185 -14.81960 -14.56767 -14.15197 -14.10539 -13.89829 -13.75529 -13.48654 -13.18158 -12.95459 -12.88893 -12.27177 -12.13218 -11.88151 -11.79417 -11.42505 -11.20317 -11.00103 -10.97455 -10.78265 -10.64328 -10.53601 -10.25527 -9.90929 -9.79207 -9.59235 -9.35365 -9.16491 -9.07843 -7.27907 -6.06451 -3.41896 0.80969 1.32442 1.76363 2.30018 2.59948 2.61163 2.91609 3.05320 3.25292 3.30668 3.32399 3.68824 4.16892 4.20057 4.29859 4.57951 4.68034 4.72176 4.75486 4.84542 4.91361 4.93279 5.09880 5.13751 5.18576 5.32072 5.37901 5.44189 5.55367 5.57897 5.69355 6.02782 6.05528 6.09042 6.11464 6.26432 6.51003 6.77356 6.99999 7.13017 7.14283 7.65859 7.66445 7.83941 8.69928 8.73726 9.40012 10.17321 11.10825 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.002247 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.718591 B =12457.106593 C =13437.863267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.023 4.023 5 C 0.601 3.399 6 O -0.523 6.523 7 N -0.706 5.706 8 C 0.215 3.785 9 C -0.066 4.066 10 C -0.012 4.012 11 N -0.264 5.264 12 C 0.077 3.923 13 C 0.164 3.836 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.087 0.913 17 C -0.001 4.001 18 N -0.920 5.920 19 Si 0.920 3.080 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.120 3.880 24 N -0.087 5.087 25 N -0.265 5.265 26 N -0.330 5.330 27 O 0.123 5.877 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.410 0.590 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.192 0.808 36 H 0.133 0.867 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.259 0.741 40 H 0.063 0.937 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 4.420 9.547 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.207 4.207 4 C -0.183 4.183 5 C 0.384 3.616 6 O -0.398 6.398 7 N -0.358 5.358 8 C 0.091 3.909 9 C -0.205 4.205 10 C -0.166 4.166 11 N -0.057 5.057 12 C -0.025 4.025 13 C 0.037 3.963 14 N -0.325 5.325 15 C -0.359 4.359 16 H 0.105 0.895 17 C -0.199 4.199 18 N -0.565 5.565 19 Si 0.749 3.251 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.008 4.008 24 N -0.066 5.066 25 N -0.132 5.132 26 N -0.030 5.030 27 O 0.047 5.953 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.199 0.801 32 H 0.245 0.755 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.209 0.791 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.804 3.639 10.527 21.855 hybrid contribution -0.243 0.194 -1.969 1.993 sum -19.047 3.833 8.558 21.230 Atomic orbital electron populations 1.20388 0.83335 1.05007 1.04444 1.24534 0.96620 0.85430 1.03137 1.22425 0.89611 1.01614 1.07062 1.23486 0.96760 0.90165 1.07851 1.16804 0.81452 0.86300 0.77012 1.90811 1.86740 1.12334 1.49869 1.45924 1.04953 1.11273 1.73670 1.19371 0.76917 0.90551 1.04054 1.21647 1.02996 1.05890 0.89969 1.23512 0.93753 0.97328 1.01983 1.47925 1.23081 1.28646 1.06016 1.25306 0.90825 0.94690 0.91681 1.22753 1.01769 0.89117 0.82677 1.45676 1.63802 1.02273 1.20752 1.19004 1.30385 0.90788 0.95717 0.89477 1.24857 1.00482 0.95841 0.98712 1.69758 1.46949 1.05855 1.33948 0.86008 0.78394 0.78752 0.81935 1.21273 1.21344 1.20319 1.22937 0.96316 0.94203 0.87316 1.78273 1.15903 1.18645 0.93785 1.75017 1.05011 1.07192 1.25996 1.74215 0.97293 1.15593 1.15947 1.84799 1.11095 1.33504 1.65916 0.89581 0.88858 0.88834 0.80115 0.75490 0.89057 0.89212 0.79132 0.84963 0.94109 0.88975 0.93085 0.91923 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.18 16 2 C -0.03 -0.25 7.47 -35.35 -0.26 -0.51 16 3 C -0.18 -1.65 10.92 -39.07 -0.43 -2.07 16 4 C -0.02 -0.28 7.19 -82.52 -0.59 -0.87 16 5 C 0.60 7.89 7.85 -12.10 -0.09 7.80 16 6 O -0.52 -7.95 16.95 5.37 0.09 -7.86 16 7 N -0.71 -8.75 5.55 -62.27 -0.35 -9.10 16 8 C 0.22 2.65 6.23 -5.19 -0.03 2.61 16 9 C -0.07 -0.96 6.62 -82.77 -0.55 -1.50 16 10 C -0.01 -0.18 10.72 -17.05 -0.18 -0.36 16 11 N -0.26 -4.37 3.54 -56.29 -0.20 -4.57 16 12 C 0.08 1.34 5.14 -70.13 -0.36 0.98 16 13 C 0.16 3.37 6.90 -2.83 -0.02 3.35 16 14 N -0.60 -13.88 3.70 -177.84 -0.66 -14.54 16 15 C -0.23 -6.00 10.70 -15.06 -0.16 -6.16 16 16 H 0.09 2.17 7.83 -52.48 -0.41 1.76 16 17 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 18 N -0.92 -25.15 11.39 55.49 0.63 -24.52 16 19 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 2.24 8.74 -2.97 -0.03 2.21 16 24 N -0.09 -1.54 13.16 60.35 0.79 -0.74 16 25 N -0.27 -4.51 12.41 33.29 0.41 -4.10 16 26 N -0.33 -3.89 11.84 33.29 0.39 -3.50 16 27 O 0.12 1.20 11.18 17.26 0.19 1.39 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.41 5.04 8.22 -40.82 -0.34 4.71 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.19 2.48 6.74 -52.49 -0.35 2.13 16 36 H 0.13 2.22 8.14 -51.93 -0.42 1.80 16 37 H 0.04 0.82 6.31 -51.93 -0.33 0.49 16 38 H 0.09 2.10 7.16 -51.93 -0.37 1.73 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.84 362.79 -5.41 -37.26 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.74 Total: 3.57 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.43 Total: 5.51 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 1.03 Total: -61.08 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.28 Total: -6.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.84 -5.41 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094271263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.186 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds