Wall clock time and date at job start Tue Mar 31 2020 16:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35320 * 126.66312 * 2 1 4 4 C 1.42274 * 103.91678 * 180.11044 * 3 2 1 5 5 C 1.48336 * 126.93448 * 179.91290 * 4 3 2 6 6 O 1.21494 * 119.99933 * 359.70492 * 5 4 3 7 7 N 1.34777 * 119.99811 * 179.71121 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 C 1.50708 * 109.46996 * 179.97438 * 8 7 5 10 10 C 1.35352 * 126.75083 * 94.70748 * 9 8 7 11 11 N 1.35311 * 106.17146 * 179.85255 * 10 9 8 12 12 C 1.46497 * 125.86802 * 180.18535 * 11 10 9 13 13 C 1.53951 * 113.73936 * 14.03951 * 12 11 10 14 14 N 1.47821 * 86.03636 * 222.08386 * 13 12 11 15 15 C 1.36934 * 134.45454 * 204.64732 * 14 13 12 16 16 H 1.08003 * 119.99962 * 179.86419 * 15 14 13 17 17 C 1.38805 * 120.00139 * 359.86356 * 15 14 13 18 18 N 1.31620 * 120.00249 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47024 * 89.99781 * 19 17 15 21 21 H 1.48501 * 109.47461 * 210.00157 * 19 17 15 22 22 H 1.48498 * 109.46786 * 330.00093 * 19 17 15 23 23 C 1.47582 * 91.04693 * 24.54693 * 14 13 12 24 24 N 1.28715 * 108.26289 * 0.42201 * 11 10 9 25 25 N 1.28626 * 110.17989 * 359.73241 * 24 11 10 26 26 N 1.30981 * 106.12641 * 359.64730 * 4 3 2 27 27 O 1.20910 * 111.43698 * 0.22425 * 26 4 3 28 28 H 1.08999 * 109.47146 * 180.26019 * 1 2 3 29 29 H 1.08999 * 109.47314 * 300.25670 * 1 2 3 30 30 H 1.09001 * 109.47143 * 60.26121 * 1 2 3 31 31 H 1.08002 * 128.04189 * 0.02562 * 3 2 1 32 32 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47226 * 299.99334 * 8 7 5 34 34 H 1.08999 * 109.47406 * 59.99933 * 8 7 5 35 35 H 1.08000 * 126.91475 * 0.02562 * 10 9 8 36 36 H 1.09000 * 112.94557 * 145.63250 * 12 11 10 37 37 H 1.08998 * 113.77066 * 336.35004 * 13 12 11 38 38 H 1.09004 * 113.76763 * 107.74896 * 13 12 11 39 39 H 0.96996 * 120.00041 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.76804 * 221.15023 * 23 14 13 41 41 H 1.09005 * 113.86656 * 89.77421 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 -0.0027 5 6 4.9076 1.2842 -0.0056 6 8 4.9008 2.4991 -0.0113 7 7 6.0785 0.6168 -0.0020 8 6 7.3430 1.3564 -0.0043 9 6 8.4940 0.3835 0.0011 10 6 9.1709 -0.0763 -1.0770 11 7 10.1148 -0.9192 -0.5981 12 6 11.0941 -1.6564 -1.4004 13 6 11.2112 -1.1538 -2.8508 14 7 11.2611 -2.5810 -3.2328 15 6 11.7694 -3.2706 -4.3010 16 1 11.6753 -4.3457 -4.3440 17 6 12.4056 -2.5880 -5.3287 18 7 12.5207 -1.2779 -5.2762 19 14 13.0984 -3.5288 -6.7863 20 1 12.0588 -3.6439 -7.8405 21 1 14.2756 -2.8042 -7.3289 22 1 13.5114 -4.8862 -6.3482 23 6 10.5457 -2.9639 -2.0001 24 7 10.0013 -0.9658 0.6832 25 7 9.0437 -0.2000 1.0720 26 7 3.4761 -0.7657 0.0038 27 8 2.3072 -1.0749 0.0054 28 1 -0.3633 -1.0276 0.0047 29 1 -0.3634 0.5178 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0301 2.1272 0.0004 32 1 6.0838 -0.3531 0.0028 33 1 7.3979 1.9795 -0.8970 34 1 7.3968 1.9871 0.8830 35 1 8.9950 0.1803 -2.1113 36 1 12.0541 -1.7731 -0.8974 37 1 10.3226 -0.6340 -3.2088 38 1 12.1342 -0.6109 -3.0544 39 1 12.9656 -0.8010 -5.9942 40 1 10.9382 -3.8633 -1.5257 41 1 9.4609 -2.9777 -2.1059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094271263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:57 Heat of formation + Delta-G solvation = 165.499383 kcal Electronic energy + Delta-G solvation = -26844.100994 eV Core-core repulsion = 22766.313648 eV Total energy + Delta-G solvation = -4077.787345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.16374 -44.41496 -40.79732 -39.96731 -36.52990 -35.21353 -35.02213 -34.34978 -33.66804 -32.47207 -29.74550 -28.70308 -28.45146 -26.89976 -26.08492 -25.30939 -23.74001 -23.46403 -22.40247 -21.31192 -21.16949 -19.12836 -18.93298 -18.79442 -18.30218 -17.89266 -17.56602 -16.99663 -16.84675 -16.47769 -16.03389 -15.75418 -15.53874 -14.91352 -14.80592 -14.50587 -14.43278 -14.37754 -13.94124 -13.75352 -13.62611 -13.43574 -13.31836 -13.00465 -12.80628 -12.67307 -12.49071 -12.42429 -12.13083 -11.85202 -11.76671 -11.67951 -11.59282 -11.06208 -10.91917 -10.41598 -10.39785 -10.35654 -9.13253 -8.02658 -5.38240 0.00016 0.50333 0.66066 1.10590 1.24633 1.47335 1.48708 1.56472 1.93046 1.96652 2.13677 2.41204 2.85604 3.03424 3.06533 3.26757 3.30199 3.51849 3.67010 3.86901 3.93730 3.94959 4.10862 4.12191 4.32491 4.41423 4.50566 4.55123 4.64277 4.79856 4.84513 4.85525 4.85949 4.95441 4.99813 5.04856 5.06813 5.26949 5.34338 5.61397 5.75303 6.12869 6.76550 6.78648 7.01016 7.39723 7.46797 8.31518 9.14133 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.002247 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.718591 B =12457.106593 C =13437.863267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.199 4.199 4 C -0.047 4.047 5 C 0.602 3.398 6 O -0.548 6.548 7 N -0.703 5.703 8 C 0.218 3.782 9 C -0.054 4.054 10 C -0.011 4.011 11 N -0.268 5.268 12 C 0.105 3.895 13 C 0.166 3.834 14 N -0.627 5.627 15 C -0.239 4.239 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.267 1.267 23 C 0.124 3.876 24 N -0.106 5.106 25 N -0.280 5.280 26 N -0.354 5.354 27 O 0.121 5.879 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.196 0.804 32 H 0.410 0.590 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.254 0.746 40 H 0.076 0.924 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.522 4.031 9.755 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.222 4.222 4 C -0.205 4.205 5 C 0.386 3.614 6 O -0.425 6.425 7 N -0.354 5.354 8 C 0.094 3.906 9 C -0.193 4.193 10 C -0.164 4.164 11 N -0.060 5.060 12 C 0.003 3.997 13 C 0.039 3.961 14 N -0.354 5.354 15 C -0.367 4.367 16 H 0.108 0.892 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.192 1.192 23 C -0.002 4.002 24 N -0.085 5.085 25 N -0.147 5.147 26 N -0.055 5.055 27 O 0.045 5.955 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.213 0.787 32 H 0.246 0.754 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.158 0.842 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.786 3.223 10.777 23.635 hybrid contribution 0.213 0.324 -1.954 1.992 sum -20.574 3.547 8.823 22.665 Atomic orbital electron populations 1.20684 0.79798 1.06453 1.06161 1.25311 0.98153 0.83990 1.00292 1.22693 0.88659 1.02875 1.07939 1.23508 0.97098 0.90591 1.09279 1.16984 0.81966 0.86086 0.76316 1.90786 1.87177 1.13313 1.51228 1.45890 1.04917 1.11260 1.73367 1.19436 0.76189 0.90033 1.04936 1.21877 1.02951 1.05336 0.89136 1.23857 0.93015 0.96651 1.02898 1.47739 1.23318 1.29107 1.05883 1.24725 0.91199 0.93468 0.90353 1.22627 1.00696 0.88085 0.84673 1.45916 1.64568 1.03560 1.21398 1.19337 1.29638 0.91332 0.96368 0.89161 1.25615 1.01505 0.96677 1.01226 1.69911 1.48197 1.07028 1.34435 0.85057 0.77268 0.77933 0.78922 1.21304 1.21994 1.19198 1.23018 0.96367 0.95332 0.85499 1.78274 1.16639 1.19532 0.94022 1.75001 1.05228 1.07545 1.26915 1.74207 0.98451 1.15709 1.17106 1.84762 1.10831 1.34436 1.65498 0.88301 0.86917 0.87021 0.78679 0.75417 0.87466 0.89111 0.77426 0.84202 0.93561 0.91590 0.93738 0.90538 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.59 16 2 C -0.01 -0.18 7.47 25.01 0.19 0.01 16 3 C -0.20 -3.30 10.92 22.60 0.25 -3.06 16 4 C -0.05 -1.09 7.19 42.96 0.31 -0.78 16 5 C 0.60 15.67 7.85 86.93 0.68 16.35 16 6 O -0.55 -16.54 16.95 -3.70 -0.06 -16.61 16 7 N -0.70 -17.06 5.55 -469.23 -2.60 -19.66 16 8 C 0.22 5.14 6.23 85.64 0.53 5.68 16 9 C -0.05 -1.50 6.62 41.60 0.28 -1.22 16 10 C -0.01 -0.30 10.72 83.49 0.89 0.59 16 11 N -0.27 -8.57 3.54 -332.00 -1.18 -9.75 16 12 C 0.10 3.55 5.14 46.74 0.24 3.79 16 13 C 0.17 6.80 6.90 86.44 0.60 7.40 16 14 N -0.63 -28.84 3.70 -716.56 -2.65 -31.50 16 15 C -0.24 -12.29 10.70 84.03 0.90 -11.39 16 16 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 18 N -0.95 -52.56 11.39 21.65 0.25 -52.31 16 19 Si 0.98 42.71 29.55 68.60 2.03 44.74 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 C 0.12 4.48 8.74 86.48 0.76 5.24 16 24 N -0.11 -3.65 13.16 37.02 0.49 -3.16 16 25 N -0.28 -9.29 12.41 -48.60 -0.60 -9.89 16 26 N -0.35 -8.20 11.84 -49.51 -0.59 -8.79 16 27 O 0.12 2.22 11.18 71.95 0.80 3.02 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.41 9.94 8.22 -92.71 -0.76 9.18 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.21 5.08 6.74 -2.91 -0.02 5.06 16 36 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 37 H 0.05 1.84 6.31 -2.39 -0.02 1.83 16 38 H 0.07 3.07 7.16 -2.38 -0.02 3.05 16 39 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -68.53 362.79 3.05 -65.49 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.33 Total: 17.71 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.83 Total: 20.71 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -6.89 Total: -135.06 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.74 Total: -13.58 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -68.53 3.05 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094271263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.986 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds