Wall clock time and date at job start Tue Mar 31 2020 16:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29936 * 125.38033 * 2 1 4 4 C 1.36061 * 108.47732 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44702 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00040 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99871 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47148 * 179.72251 * 8 7 5 10 10 C 1.35348 * 126.75437 * 94.70929 * 9 8 7 11 11 N 1.35308 * 106.17954 * 179.85012 * 10 9 8 12 12 C 1.46501 * 125.87437 * 180.18499 * 11 10 9 13 13 C 1.53946 * 113.73649 * 14.04030 * 12 11 10 14 14 N 1.47817 * 86.03679 * 222.08459 * 13 12 11 15 15 C 1.36934 * 134.45716 * 204.65186 * 14 13 12 16 16 H 1.08002 * 119.99975 * 179.86059 * 15 14 13 17 17 C 1.38812 * 120.00028 * 359.85515 * 15 14 13 18 18 N 1.31618 * 120.00014 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47370 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46655 * 120.00359 * 19 17 15 22 22 H 1.48500 * 109.47511 * 240.00320 * 19 17 15 23 23 C 1.47575 * 91.04759 * 24.54816 * 14 13 12 24 24 N 1.28715 * 108.26166 * 0.41823 * 11 10 9 25 25 N 1.28632 * 110.17987 * 359.73451 * 24 11 10 26 26 C 1.36089 * 107.10737 * 0.22571 * 4 3 2 27 27 O 1.34057 * 125.37964 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47045 * 89.99326 * 1 2 3 29 29 H 1.08993 * 109.46824 * 209.99665 * 1 2 3 30 30 H 1.08998 * 109.46556 * 329.99832 * 1 2 3 31 31 H 0.97005 * 120.00161 * 359.72174 * 7 5 4 32 32 H 1.09001 * 109.46512 * 299.72412 * 8 7 5 33 33 H 1.08998 * 109.47174 * 59.71534 * 8 7 5 34 34 H 1.08008 * 126.91028 * 0.02562 * 10 9 8 35 35 H 1.08993 * 112.94612 * 145.62783 * 12 11 10 36 36 H 1.08995 * 113.77225 * 336.34727 * 13 12 11 37 37 H 1.09004 * 113.76942 * 107.74430 * 13 12 11 38 38 H 0.96998 * 119.99816 * 179.97438 * 18 17 15 39 39 H 1.09005 * 113.77172 * 221.15557 * 23 14 13 40 40 H 1.09006 * 113.87381 * 89.77089 * 23 14 13 41 41 H 1.08002 * 126.52959 * 179.77116 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0618 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7633 3.7570 -0.0011 9 6 5.3182 5.1967 -0.0083 10 6 5.1614 6.0014 1.0687 11 7 4.7544 7.1991 0.5884 12 6 4.4602 8.3901 1.3891 13 6 4.9707 8.3037 2.8389 14 7 3.6774 8.9085 3.2218 15 6 3.2432 9.6480 4.2894 16 1 2.2171 9.9821 4.3333 17 6 4.1218 9.9681 5.3153 18 7 5.3724 9.5613 5.2617 19 14 3.5292 10.9762 6.7721 20 1 2.0924 11.3063 6.5940 21 1 3.7055 10.1922 8.0210 22 1 4.3186 12.2310 6.8597 23 6 3.0433 8.3979 1.9910 24 7 4.6652 7.1108 -0.6926 25 7 4.9947 5.9292 -1.0800 26 6 3.5661 -0.6971 -0.0042 27 8 2.2832 -1.0930 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 3.6973 3.2670 -0.0044 32 1 6.3593 3.5654 0.8912 33 1 6.3637 3.5578 -0.8887 34 1 5.3303 5.7408 2.1031 35 1 4.7277 9.3183 0.8843 36 1 5.1019 7.2832 3.1984 37 1 5.8319 8.9410 3.0402 38 1 5.9864 9.7853 5.9784 39 1 2.3684 9.1103 1.5164 40 1 2.6064 7.4052 2.0990 41 1 4.4362 -1.3368 -0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094286923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:35 Heat of formation + Delta-G solvation = 147.776593 kcal Electronic energy + Delta-G solvation = -26914.839285 eV Core-core repulsion = 22836.283422 eV Total energy + Delta-G solvation = -4078.555863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.75462 -43.06752 -39.60041 -38.36357 -35.35382 -35.17954 -33.40489 -32.60839 -31.97502 -31.21488 -28.33224 -27.97185 -27.05465 -25.29611 -24.43084 -23.94686 -21.97651 -21.86531 -21.05562 -20.70257 -19.62781 -18.57122 -17.39480 -17.25967 -16.90214 -16.58120 -16.37570 -15.63887 -15.31683 -15.13588 -14.84846 -14.56521 -14.28656 -14.08693 -13.79405 -13.57465 -13.40536 -13.13280 -12.94153 -12.91770 -12.24142 -12.11208 -11.84736 -11.57781 -11.38512 -11.18953 -11.14867 -10.99329 -10.95250 -10.55167 -10.46776 -10.21264 -9.90174 -9.55970 -9.41170 -9.15144 -9.12149 -9.06258 -7.26514 -6.05616 -3.40884 0.79973 1.68708 1.81289 2.21889 2.42182 2.64582 3.09609 3.18987 3.25376 3.31328 3.33608 3.58812 4.21302 4.34758 4.44379 4.52485 4.71349 4.73937 4.88128 4.92594 4.93807 5.10022 5.14424 5.20018 5.28196 5.36523 5.40261 5.49115 5.58952 5.73445 5.77299 6.05201 6.11244 6.15191 6.19820 6.29857 6.53697 6.79138 7.02983 7.07280 7.15832 7.40078 7.66894 7.96254 8.73740 8.75093 9.40986 10.18571 11.11726 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002346 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.535943 B =11930.507022 C =12847.049539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.461 5.461 4 C -0.069 4.069 5 C 0.604 3.396 6 O -0.539 6.539 7 N -0.704 5.704 8 C 0.215 3.785 9 C -0.064 4.064 10 C -0.013 4.013 11 N -0.265 5.265 12 C 0.077 3.923 13 C 0.163 3.837 14 N -0.599 5.599 15 C -0.231 4.231 16 H 0.088 0.912 17 C -0.002 4.002 18 N -0.919 5.919 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.120 3.880 24 N -0.088 5.088 25 N -0.266 5.266 26 C 0.012 3.988 27 O -0.198 6.198 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.412 0.588 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.132 0.868 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.258 0.742 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -18.503 -9.559 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.012 4.012 3 N -0.192 5.192 4 C -0.189 4.189 5 C 0.389 3.611 6 O -0.416 6.416 7 N -0.355 5.355 8 C 0.090 3.910 9 C -0.203 4.203 10 C -0.166 4.166 11 N -0.057 5.057 12 C -0.025 4.025 13 C 0.037 3.963 14 N -0.325 5.325 15 C -0.358 4.358 16 H 0.106 0.894 17 C -0.199 4.199 18 N -0.565 5.565 19 Si 0.749 3.251 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.008 4.008 24 N -0.067 5.067 25 N -0.132 5.132 26 C -0.062 4.062 27 O -0.084 6.084 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.208 0.792 35 H 0.150 0.850 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.446 -17.220 -10.534 20.908 hybrid contribution -0.106 -0.401 1.958 2.002 sum -5.551 -17.621 -8.575 20.368 Atomic orbital electron populations 1.20339 0.80779 1.05523 1.05028 1.26369 0.96709 0.78214 0.99867 1.70797 1.00729 1.29973 1.17666 1.21773 0.92125 0.93055 1.11991 1.16672 0.86181 0.81704 0.76535 1.90833 1.24182 1.75414 1.51205 1.45849 1.11054 1.05085 1.73472 1.19345 0.86755 0.81024 1.03851 1.21664 1.10778 0.97920 0.89915 1.23500 1.05051 0.86118 1.01972 1.47905 1.40404 1.11388 1.06023 1.25283 1.00954 0.84520 0.91720 1.22748 0.92965 0.97896 0.82710 1.45678 1.06765 1.59172 1.20921 1.19050 0.95891 1.25090 0.95781 0.89440 1.24856 0.95791 1.00548 0.98721 1.69770 1.03621 1.49104 1.33980 0.85945 0.77998 0.79351 0.81826 1.20214 1.21440 1.21370 1.22934 0.92310 0.98204 0.87303 1.78268 1.19680 1.14946 0.93817 1.75020 1.14303 0.97917 1.26000 1.25280 0.84830 0.95629 1.00468 1.84396 1.16739 1.37965 1.69304 0.88613 0.89081 0.87724 0.75204 0.89260 0.89409 0.79184 0.85016 0.94089 0.89011 0.93151 0.91960 0.93911 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.20 1.74 8.31 -13.08 -0.11 1.63 16 3 N -0.46 -5.26 11.06 -7.65 -0.08 -5.35 16 4 C -0.07 -0.81 6.99 -83.02 -0.58 -1.39 16 5 C 0.60 7.91 7.81 -12.52 -0.10 7.81 16 6 O -0.54 -8.07 16.89 5.27 0.09 -7.98 16 7 N -0.70 -8.83 5.55 -62.56 -0.35 -9.18 16 8 C 0.21 2.68 6.23 -5.19 -0.03 2.65 16 9 C -0.06 -0.93 6.62 -82.78 -0.55 -1.48 16 10 C -0.01 -0.19 10.72 -17.05 -0.18 -0.37 16 11 N -0.26 -4.38 3.54 -56.30 -0.20 -4.58 16 12 C 0.08 1.34 5.14 -70.14 -0.36 0.98 16 13 C 0.16 3.36 6.90 -2.84 -0.02 3.34 16 14 N -0.60 -13.84 3.70 -177.87 -0.66 -14.50 16 15 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 16 H 0.09 2.18 7.83 -52.49 -0.41 1.77 16 17 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 18 N -0.92 -25.11 11.39 55.49 0.63 -24.47 16 19 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.12 2.23 8.74 -2.97 -0.03 2.21 16 24 N -0.09 -1.56 13.16 60.35 0.79 -0.76 16 25 N -0.27 -4.54 12.41 33.29 0.41 -4.12 16 26 C 0.01 0.11 11.95 29.96 0.36 0.46 16 27 O -0.20 -1.73 10.73 6.50 0.07 -1.66 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.41 5.20 8.19 -40.82 -0.33 4.87 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.19 2.50 6.74 -52.48 -0.35 2.14 16 35 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 36 H 0.04 0.83 6.31 -51.93 -0.33 0.50 16 37 H 0.09 2.10 7.17 -51.93 -0.37 1.72 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.23 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -32.41 363.15 -5.06 -37.46 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.74 Total: 4.30 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.48 Total: 9.70 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.55 Total: -62.98 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.16 Total: -9.65 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.41 -5.06 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094286923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.239 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds