Wall clock time and date at job start Tue Mar 31 2020 16:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29936 * 125.38033 * 2 1 4 4 C 1.36061 * 108.47732 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44702 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00040 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99871 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47148 * 179.72251 * 8 7 5 10 10 C 1.35348 * 126.75437 * 94.70929 * 9 8 7 11 11 N 1.35308 * 106.17954 * 179.85012 * 10 9 8 12 12 C 1.46501 * 125.87437 * 180.18499 * 11 10 9 13 13 C 1.53946 * 113.73649 * 14.04030 * 12 11 10 14 14 N 1.47817 * 86.03679 * 222.08459 * 13 12 11 15 15 C 1.36934 * 134.45716 * 204.65186 * 14 13 12 16 16 H 1.08002 * 119.99975 * 179.86059 * 15 14 13 17 17 C 1.38812 * 120.00028 * 359.85515 * 15 14 13 18 18 N 1.31618 * 120.00014 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47370 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46655 * 120.00359 * 19 17 15 22 22 H 1.48500 * 109.47511 * 240.00320 * 19 17 15 23 23 C 1.47575 * 91.04759 * 24.54816 * 14 13 12 24 24 N 1.28715 * 108.26166 * 0.41823 * 11 10 9 25 25 N 1.28632 * 110.17987 * 359.73451 * 24 11 10 26 26 C 1.36089 * 107.10737 * 0.22571 * 4 3 2 27 27 O 1.34057 * 125.37964 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47045 * 89.99326 * 1 2 3 29 29 H 1.08993 * 109.46824 * 209.99665 * 1 2 3 30 30 H 1.08998 * 109.46556 * 329.99832 * 1 2 3 31 31 H 0.97005 * 120.00161 * 359.72174 * 7 5 4 32 32 H 1.09001 * 109.46512 * 299.72412 * 8 7 5 33 33 H 1.08998 * 109.47174 * 59.71534 * 8 7 5 34 34 H 1.08008 * 126.91028 * 0.02562 * 10 9 8 35 35 H 1.08993 * 112.94612 * 145.62783 * 12 11 10 36 36 H 1.08995 * 113.77225 * 336.34727 * 13 12 11 37 37 H 1.09004 * 113.76942 * 107.74430 * 13 12 11 38 38 H 0.96998 * 119.99816 * 179.97438 * 18 17 15 39 39 H 1.09005 * 113.77172 * 221.15557 * 23 14 13 40 40 H 1.09006 * 113.87381 * 89.77089 * 23 14 13 41 41 H 1.08002 * 126.52959 * 179.77116 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0618 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7633 3.7570 -0.0011 9 6 5.3182 5.1967 -0.0083 10 6 5.1614 6.0014 1.0687 11 7 4.7544 7.1991 0.5884 12 6 4.4602 8.3901 1.3891 13 6 4.9707 8.3037 2.8389 14 7 3.6774 8.9085 3.2218 15 6 3.2432 9.6480 4.2894 16 1 2.2171 9.9821 4.3333 17 6 4.1218 9.9681 5.3153 18 7 5.3724 9.5613 5.2617 19 14 3.5292 10.9762 6.7721 20 1 2.0924 11.3063 6.5940 21 1 3.7055 10.1922 8.0210 22 1 4.3186 12.2310 6.8597 23 6 3.0433 8.3979 1.9910 24 7 4.6652 7.1108 -0.6926 25 7 4.9947 5.9292 -1.0800 26 6 3.5661 -0.6971 -0.0042 27 8 2.2832 -1.0930 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 3.6973 3.2670 -0.0044 32 1 6.3593 3.5654 0.8912 33 1 6.3637 3.5578 -0.8887 34 1 5.3303 5.7408 2.1031 35 1 4.7277 9.3183 0.8843 36 1 5.1019 7.2832 3.1984 37 1 5.8319 8.9410 3.0402 38 1 5.9864 9.7853 5.9784 39 1 2.3684 9.1103 1.5164 40 1 2.6064 7.4052 2.0990 41 1 4.4362 -1.3368 -0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094286923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:34 Heat of formation + Delta-G solvation = 122.162980 kcal Electronic energy + Delta-G solvation = -26915.949975 eV Core-core repulsion = 22836.283422 eV Total energy + Delta-G solvation = -4079.666553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.46175 -44.37008 -40.61655 -39.94076 -36.41734 -35.95922 -34.96636 -33.67519 -33.19282 -32.40009 -29.72582 -28.97794 -28.08408 -26.85893 -26.04105 -24.84756 -23.43627 -22.67088 -22.23276 -21.60229 -21.14413 -19.48519 -18.97759 -18.27158 -17.96092 -17.58241 -17.45807 -16.98362 -16.82544 -16.34753 -15.99443 -15.72747 -15.54650 -14.94457 -14.79290 -14.67523 -14.41328 -14.31824 -13.89637 -13.72710 -13.59199 -13.41114 -13.27899 -12.97984 -12.80990 -12.65722 -12.44933 -12.34561 -12.07239 -11.91492 -11.80652 -11.73707 -11.52893 -11.04294 -10.89962 -10.35718 -10.31754 -9.96765 -9.11406 -8.01332 -5.36689 0.05326 0.54450 0.93029 1.17662 1.28044 1.47765 1.49475 1.58287 1.61593 2.17787 2.22904 2.42405 2.89876 3.06523 3.09902 3.30168 3.32203 3.67607 3.73881 3.79674 3.90212 3.98649 4.14163 4.42575 4.44400 4.52676 4.53608 4.57592 4.67074 4.67175 4.74078 4.85460 4.89629 4.98945 5.03077 5.08891 5.18927 5.23584 5.36183 5.64734 5.76850 6.22333 6.53660 6.80217 6.97363 7.43590 7.48336 8.33272 9.15674 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002346 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.535943 B =11930.507022 C =12847.049539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.201 3.799 3 N -0.493 5.493 4 C -0.104 4.104 5 C 0.605 3.395 6 O -0.563 6.563 7 N -0.702 5.702 8 C 0.218 3.782 9 C -0.052 4.052 10 C -0.011 4.011 11 N -0.268 5.268 12 C 0.105 3.895 13 C 0.166 3.834 14 N -0.627 5.627 15 C -0.237 4.237 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.291 1.291 23 C 0.125 3.875 24 N -0.106 5.106 25 N -0.281 5.281 26 C 0.030 3.970 27 O -0.196 6.196 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.412 0.588 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.208 0.792 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -19.773 -9.790 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 N -0.224 5.224 4 C -0.223 4.223 5 C 0.391 3.609 6 O -0.443 6.443 7 N -0.352 5.352 8 C 0.094 3.906 9 C -0.191 4.191 10 C -0.165 4.165 11 N -0.061 5.061 12 C 0.002 3.998 13 C 0.039 3.961 14 N -0.354 5.354 15 C -0.365 4.365 16 H 0.109 0.891 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.001 4.001 24 N -0.085 5.085 25 N -0.147 5.147 26 C -0.045 4.045 27 O -0.082 6.082 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.225 0.775 35 H 0.157 0.843 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -6.814 -18.489 -10.806 22.473 hybrid contribution 0.259 -0.124 1.949 1.971 sum -6.554 -18.613 -8.856 21.630 Atomic orbital electron populations 1.20608 0.77849 1.06726 1.06442 1.27241 0.98066 0.77599 0.97909 1.70763 1.00923 1.31344 1.19393 1.21705 0.91954 0.93879 1.14727 1.16860 0.86427 0.81765 0.75810 1.90808 1.25171 1.75760 1.52557 1.45808 1.10926 1.05120 1.73369 1.19391 0.86841 0.79790 1.04602 1.21891 1.09593 0.98511 0.89106 1.23833 1.04341 0.85454 1.02856 1.47722 1.40943 1.11506 1.05888 1.24712 0.99586 0.85084 0.90380 1.22619 0.91453 0.97296 0.84715 1.45916 1.08423 1.59534 1.21568 1.19377 0.96051 1.24674 0.96406 0.89123 1.25609 0.96062 1.02139 1.01234 1.69921 1.04492 1.50693 1.34488 0.84995 0.78018 0.77552 0.78628 1.18900 1.21941 1.21813 1.23016 0.93059 0.98619 0.85455 1.78269 1.20768 1.15429 0.94052 1.75004 1.14722 0.98094 1.26910 1.25786 0.85596 0.95093 0.97996 1.84439 1.16643 1.37959 1.69162 0.86945 0.86825 0.87494 0.75248 0.87790 0.89429 0.77523 0.84271 0.93578 0.91664 0.93780 0.90525 0.93072 0.72608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.20 3.22 8.31 88.39 0.73 3.95 16 3 N -0.49 -10.87 11.06 -293.02 -3.24 -14.11 16 4 C -0.10 -2.34 6.99 40.41 0.28 -2.06 16 5 C 0.60 15.56 7.81 86.66 0.68 16.24 16 6 O -0.56 -16.59 16.89 -4.06 -0.07 -16.66 16 7 N -0.70 -17.21 5.55 -470.10 -2.61 -19.82 16 8 C 0.22 5.23 6.23 85.63 0.53 5.77 16 9 C -0.05 -1.45 6.62 41.59 0.28 -1.18 16 10 C -0.01 -0.33 10.72 83.49 0.89 0.57 16 11 N -0.27 -8.57 3.54 -332.03 -1.18 -9.74 16 12 C 0.10 3.53 5.14 46.74 0.24 3.77 16 13 C 0.17 6.79 6.90 86.44 0.60 7.38 16 14 N -0.63 -28.69 3.70 -716.65 -2.65 -31.35 16 15 C -0.24 -12.14 10.70 84.03 0.90 -11.24 16 16 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 18 N -0.95 -52.48 11.39 21.65 0.25 -52.23 16 19 Si 0.98 42.59 29.55 68.60 2.03 44.62 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.12 4.47 8.74 86.49 0.76 5.23 16 24 N -0.11 -3.67 13.16 37.02 0.49 -3.18 16 25 N -0.28 -9.33 12.41 -48.60 -0.60 -9.93 16 26 C 0.03 0.49 11.95 67.32 0.80 1.29 16 27 O -0.20 -3.06 10.73 0.33 0.00 -3.06 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.41 10.21 8.19 -92.70 -0.76 9.45 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.21 5.11 6.74 -2.91 -0.02 5.09 16 35 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 36 H 0.05 1.84 6.31 -2.39 -0.02 1.82 16 37 H 0.07 3.04 7.17 -2.38 -0.02 3.02 16 38 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.26 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.25 363.15 0.66 -68.59 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.34 Total: 19.28 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 7.91 Total: 27.59 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -9.55 Total: -140.36 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.07 Total: -19.72 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -69.25 0.66 -68.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094286923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.754 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds