Wall clock time and date at job start Tue Mar 31 2020 17:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47510 * 2 1 4 4 H 1.09004 * 109.46927 * 54.99962 * 3 2 1 5 5 F 1.39901 * 109.46953 * 295.00132 * 3 2 1 6 6 C 1.50702 * 109.47334 * 174.99761 * 3 2 1 7 7 O 1.21275 * 119.99838 * 45.83140 * 6 3 2 8 8 N 1.34778 * 119.99752 * 225.82758 * 6 3 2 9 9 C 1.46500 * 120.00419 * 5.33659 * 8 6 3 10 10 C 1.46501 * 119.99693 * 185.33392 * 8 6 3 11 11 C 1.53001 * 109.47186 * 264.46578 * 10 8 6 12 12 H 1.09001 * 113.04232 * 293.43441 * 11 10 8 13 13 C 1.53948 * 113.76800 * 65.18905 * 11 10 8 14 14 C 1.53943 * 86.29186 * 137.90921 * 13 11 10 15 15 N 1.47579 * 113.76886 * 161.68260 * 11 10 8 16 16 C 1.34770 * 134.49468 * 41.05487 * 15 11 10 17 17 O 1.21280 * 120.00246 * 5.02758 * 16 15 11 18 18 C 1.50704 * 120.00198 * 185.02505 * 16 15 11 19 19 S 1.81001 * 109.47175 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00009 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99753 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99796 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00260 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47107 * 89.99846 * 24 22 20 26 26 H 1.48498 * 109.47078 * 209.99969 * 24 22 20 27 27 H 1.48499 * 109.46929 * 329.99968 * 24 22 20 28 28 H 1.08996 * 109.47308 * 300.00098 * 1 2 3 29 29 H 1.09004 * 109.47220 * 60.00226 * 1 2 3 30 30 H 1.09005 * 109.47652 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47068 * 239.99560 * 2 1 3 32 32 H 1.09004 * 109.47087 * 120.00312 * 2 1 3 33 33 H 1.08992 * 109.47234 * 175.32700 * 9 8 6 34 34 H 1.09004 * 109.46395 * 295.32686 * 9 8 6 35 35 H 1.08998 * 109.46909 * 55.32235 * 9 8 6 36 36 H 1.09003 * 109.46890 * 144.46350 * 10 8 6 37 37 H 1.09006 * 109.47081 * 24.46676 * 10 8 6 38 38 H 1.09004 * 113.73833 * 252.25177 * 13 11 10 39 39 H 1.09004 * 113.74248 * 23.55712 * 13 11 10 40 40 H 1.08998 * 113.77284 * 90.68950 * 14 13 11 41 41 H 1.08994 * 113.76952 * 222.09411 * 14 13 11 42 42 H 1.09000 * 109.47098 * 300.00498 * 18 16 15 43 43 H 1.08998 * 109.46867 * 60.00613 * 18 16 15 44 44 H 0.96994 * 120.00051 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0679 -1.1954 6 6 3.5419 1.4442 0.1239 7 8 4.2073 0.6915 -0.5555 8 7 4.1457 2.2823 0.9897 9 6 3.3400 3.1074 1.8931 10 6 5.6077 2.3681 1.0273 11 6 6.1444 1.4495 2.1268 12 1 5.8652 1.7752 3.1289 13 6 5.8876 -0.0459 1.8662 14 6 7.3247 -0.2775 2.3672 15 7 7.5771 1.1254 1.9844 16 6 8.6750 1.8281 1.6421 17 8 8.5962 3.0241 1.4571 18 6 10.0007 1.1278 1.4895 19 16 11.2701 2.3329 1.0285 20 6 12.6733 1.2728 0.9196 21 1 12.5686 0.2164 1.1183 22 6 13.9132 1.7955 0.5795 23 7 14.9616 1.0037 0.4986 24 14 14.0946 3.6231 0.2379 25 1 14.4189 4.3330 1.5012 26 1 15.1874 3.8369 -0.7446 27 1 12.8217 4.1521 -0.3145 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9973 3.6536 2.5696 34 1 2.7499 3.8146 1.3101 35 1 2.6733 2.4680 2.4717 36 1 5.9061 3.3958 1.2346 37 1 6.0147 2.0588 0.0645 38 1 5.1229 -0.4787 2.5113 39 1 5.7451 -0.2897 0.8134 40 1 7.3922 -0.4591 3.4398 41 1 7.8847 -1.0017 1.7758 42 1 10.2734 0.6564 2.4337 43 1 9.9223 0.3671 0.7128 44 1 15.8281 1.3689 0.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739802718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:46 Heat of formation + Delta-G solvation = -83.023345 kcal Electronic energy + Delta-G solvation = -26387.381251 eV Core-core repulsion = 22382.048391 eV Total energy + Delta-G solvation = -4005.332861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.27895 -40.78528 -39.64436 -37.48930 -35.99297 -34.48017 -32.43316 -31.07533 -29.78602 -28.21728 -27.93037 -26.76755 -25.59719 -23.93768 -22.39060 -21.82021 -19.89636 -18.98495 -18.11545 -17.72156 -17.20433 -16.85111 -16.47597 -16.29361 -15.75521 -15.28630 -15.01746 -14.84668 -14.61239 -14.31501 -14.15361 -13.89351 -13.59512 -13.48811 -13.29187 -13.00217 -12.84199 -12.80505 -12.62927 -12.48108 -12.37200 -12.08137 -11.91403 -11.62517 -11.58410 -11.29710 -11.25435 -11.00496 -10.96767 -10.60374 -10.09380 -9.84600 -9.44995 -9.22401 -8.99840 -8.62272 -8.49595 -6.91460 -6.28199 -4.00002 1.98354 2.21073 2.69376 2.93214 3.14831 3.33270 3.51019 3.57834 3.75476 3.98496 4.12343 4.21433 4.33504 4.39359 4.53059 4.58121 4.66179 4.77956 4.83205 4.85559 4.91470 4.96724 5.06150 5.10856 5.14375 5.17468 5.21627 5.34617 5.37183 5.42332 5.56118 5.60194 5.66819 5.71331 5.77567 5.86443 6.01720 6.04056 6.17388 6.80430 7.59590 7.74372 7.94936 8.41749 8.42613 9.17840 10.81036 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.025310 B = 0.002323 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.010264 B =12051.740801 C =12284.539566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.081 3.919 4 H 0.102 0.898 5 F -0.189 7.189 6 C 0.492 3.508 7 O -0.509 6.509 8 N -0.606 5.606 9 C 0.071 3.929 10 C 0.113 3.887 11 C 0.122 3.878 12 H 0.090 0.910 13 C -0.149 4.149 14 C 0.103 3.897 15 N -0.642 5.642 16 C 0.555 3.445 17 O -0.519 6.519 18 C -0.116 4.116 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.622 -1.865 5.708 32.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.041 3.959 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.277 3.723 7 O -0.383 6.383 8 N -0.340 5.340 9 C -0.072 4.072 10 C -0.010 4.010 11 C 0.017 3.983 12 H 0.108 0.892 13 C -0.187 4.187 14 C -0.020 4.020 15 N -0.382 5.382 16 C 0.344 3.656 17 O -0.393 6.393 18 C -0.266 4.266 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.972 -0.371 4.933 31.365 hybrid contribution 0.564 -0.587 0.237 0.848 sum -30.409 -0.958 5.170 30.860 Atomic orbital electron populations 1.21774 0.94064 1.02752 1.02495 1.22005 0.97343 0.93469 1.05152 1.21726 0.91940 0.96438 0.85753 0.88064 1.92892 1.91955 1.83891 1.48227 1.21012 0.90423 0.80562 0.80259 1.90739 1.65810 1.38248 1.43467 1.47818 1.07039 1.41366 1.37777 1.21959 0.96404 0.95123 0.93750 1.21693 0.77877 1.00975 1.00497 1.23080 0.80504 0.95975 0.98701 0.89189 1.23706 0.96417 0.94575 1.03990 1.23134 0.94760 0.83689 1.00440 1.50079 1.06098 1.12283 1.69717 1.20044 0.83603 0.86611 0.75331 1.90689 1.84670 1.14159 1.49822 1.23213 0.94532 1.03449 1.05430 1.84754 1.02315 1.13828 1.90697 1.22304 0.92894 0.96868 1.54720 0.89392 1.24716 0.94573 0.98551 0.93506 1.69938 0.99942 1.35597 1.46193 0.86728 0.80433 0.85083 0.79568 1.19223 1.19920 1.15924 0.92359 0.91891 0.91601 0.89318 0.89750 0.89505 0.91639 0.91469 0.89007 0.88679 0.90448 0.87510 0.89741 0.89628 0.88709 0.88515 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.83 37.15 0.37 -0.34 16 2 C -0.14 -0.87 5.42 -26.74 -0.14 -1.02 16 3 C 0.08 0.59 3.46 -27.89 -0.10 0.49 16 4 H 0.10 0.41 6.01 -51.93 -0.31 0.10 16 5 F -0.19 -1.88 16.75 2.25 0.04 -1.84 16 6 C 0.49 4.95 6.63 -10.98 -0.07 4.88 16 7 O -0.51 -7.01 14.28 5.56 0.08 -6.93 16 8 N -0.61 -5.25 2.79 -181.57 -0.51 -5.76 16 9 C 0.07 0.32 9.30 59.85 0.56 0.88 16 10 C 0.11 1.30 4.89 -4.04 -0.02 1.28 16 11 C 0.12 1.32 4.52 -66.86 -0.30 1.01 16 12 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.15 -1.39 7.22 -25.81 -0.19 -1.57 16 14 C 0.10 1.04 8.61 -2.97 -0.03 1.02 16 15 N -0.64 -9.02 3.49 -171.19 -0.60 -9.62 16 16 C 0.55 10.40 7.94 -10.99 -0.09 10.31 16 17 O -0.52 -11.34 16.15 5.56 0.09 -11.25 16 18 C -0.12 -2.36 5.91 36.01 0.21 -2.15 16 19 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 20 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.26 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.83 13.97 55.49 0.78 -26.06 16 24 Si 0.86 22.07 27.74 -169.99 -4.72 17.35 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.33 7.94 -51.93 -0.41 -0.08 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.35 7.90 -51.93 -0.41 -0.06 16 34 H 0.06 0.25 8.03 -51.93 -0.42 -0.17 16 35 H 0.07 0.15 7.51 -51.93 -0.39 -0.24 16 36 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.09 1.41 7.34 -51.93 -0.38 1.02 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.11 1.24 6.34 -51.93 -0.33 0.91 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.10 1.89 8.14 -51.92 -0.42 1.46 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -36.64 380.76 -7.55 -44.19 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.87 Total: -2.73 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 0.41 Total: 2.60 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.33 Total: -41.43 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.64 -7.55 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739802718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.836 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds