Wall clock time and date at job start Tue Mar 31 2020 17:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47510 * 2 1 4 4 H 1.09004 * 109.46927 * 54.99962 * 3 2 1 5 5 F 1.39901 * 109.46953 * 295.00132 * 3 2 1 6 6 C 1.50702 * 109.47334 * 174.99761 * 3 2 1 7 7 O 1.21275 * 119.99838 * 45.83140 * 6 3 2 8 8 N 1.34778 * 119.99752 * 225.82758 * 6 3 2 9 9 C 1.46500 * 120.00419 * 5.33659 * 8 6 3 10 10 C 1.46501 * 119.99693 * 185.33392 * 8 6 3 11 11 C 1.53001 * 109.47186 * 264.46578 * 10 8 6 12 12 H 1.09001 * 113.04232 * 293.43441 * 11 10 8 13 13 C 1.53948 * 113.76800 * 65.18905 * 11 10 8 14 14 C 1.53943 * 86.29186 * 137.90921 * 13 11 10 15 15 N 1.47579 * 113.76886 * 161.68260 * 11 10 8 16 16 C 1.34770 * 134.49468 * 41.05487 * 15 11 10 17 17 O 1.21280 * 120.00246 * 5.02758 * 16 15 11 18 18 C 1.50704 * 120.00198 * 185.02505 * 16 15 11 19 19 S 1.81001 * 109.47175 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00009 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99753 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99796 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00260 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47107 * 89.99846 * 24 22 20 26 26 H 1.48498 * 109.47078 * 209.99969 * 24 22 20 27 27 H 1.48499 * 109.46929 * 329.99968 * 24 22 20 28 28 H 1.08996 * 109.47308 * 300.00098 * 1 2 3 29 29 H 1.09004 * 109.47220 * 60.00226 * 1 2 3 30 30 H 1.09005 * 109.47652 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47068 * 239.99560 * 2 1 3 32 32 H 1.09004 * 109.47087 * 120.00312 * 2 1 3 33 33 H 1.08992 * 109.47234 * 175.32700 * 9 8 6 34 34 H 1.09004 * 109.46395 * 295.32686 * 9 8 6 35 35 H 1.08998 * 109.46909 * 55.32235 * 9 8 6 36 36 H 1.09003 * 109.46890 * 144.46350 * 10 8 6 37 37 H 1.09006 * 109.47081 * 24.46676 * 10 8 6 38 38 H 1.09004 * 113.73833 * 252.25177 * 13 11 10 39 39 H 1.09004 * 113.74248 * 23.55712 * 13 11 10 40 40 H 1.08998 * 113.77284 * 90.68950 * 14 13 11 41 41 H 1.08994 * 113.76952 * 222.09411 * 14 13 11 42 42 H 1.09000 * 109.47098 * 300.00498 * 18 16 15 43 43 H 1.08998 * 109.46867 * 60.00613 * 18 16 15 44 44 H 0.96994 * 120.00051 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0679 -1.1954 6 6 3.5419 1.4442 0.1239 7 8 4.2073 0.6915 -0.5555 8 7 4.1457 2.2823 0.9897 9 6 3.3400 3.1074 1.8931 10 6 5.6077 2.3681 1.0273 11 6 6.1444 1.4495 2.1268 12 1 5.8652 1.7752 3.1289 13 6 5.8876 -0.0459 1.8662 14 6 7.3247 -0.2775 2.3672 15 7 7.5771 1.1254 1.9844 16 6 8.6750 1.8281 1.6421 17 8 8.5962 3.0241 1.4571 18 6 10.0007 1.1278 1.4895 19 16 11.2701 2.3329 1.0285 20 6 12.6733 1.2728 0.9196 21 1 12.5686 0.2164 1.1183 22 6 13.9132 1.7955 0.5795 23 7 14.9616 1.0037 0.4986 24 14 14.0946 3.6231 0.2379 25 1 14.4189 4.3330 1.5012 26 1 15.1874 3.8369 -0.7446 27 1 12.8217 4.1521 -0.3145 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9973 3.6536 2.5696 34 1 2.7499 3.8146 1.3101 35 1 2.6733 2.4680 2.4717 36 1 5.9061 3.3958 1.2346 37 1 6.0147 2.0588 0.0645 38 1 5.1229 -0.4787 2.5113 39 1 5.7451 -0.2897 0.8134 40 1 7.3922 -0.4591 3.4398 41 1 7.8847 -1.0017 1.7758 42 1 10.2734 0.6564 2.4337 43 1 9.9223 0.3671 0.7128 44 1 15.8281 1.3689 0.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739802718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:45 Heat of formation + Delta-G solvation = -107.878889 kcal Electronic energy + Delta-G solvation = -26388.459069 eV Core-core repulsion = 22382.048391 eV Total energy + Delta-G solvation = -4006.410678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.95818 -41.73562 -40.61374 -38.78552 -36.76079 -34.96940 -34.70900 -32.35422 -30.69370 -29.49397 -28.47938 -27.88526 -27.34485 -24.71370 -23.17306 -22.66668 -20.61468 -20.30852 -19.54703 -18.76850 -18.15167 -17.87309 -17.40004 -17.16273 -17.13135 -16.75131 -16.28795 -16.05042 -15.71190 -15.43146 -15.20075 -14.93480 -14.74608 -14.39271 -14.12383 -14.01224 -13.85193 -13.78500 -13.46264 -13.38042 -13.27073 -13.11321 -13.04070 -12.98554 -12.76132 -12.67408 -12.44250 -11.99918 -11.89504 -11.85837 -11.74659 -11.20225 -10.95864 -10.78258 -10.59769 -10.04913 -9.64507 -9.04653 -8.54767 -6.26577 0.89524 1.22915 1.28504 1.34751 1.47038 1.48189 1.63919 2.06026 2.22257 2.63036 2.83040 3.14001 3.33428 3.49657 3.52534 3.66519 3.77685 3.90622 3.97534 3.99420 4.14205 4.23172 4.34313 4.36537 4.41874 4.47409 4.51229 4.54103 4.61024 4.70366 4.76506 4.87847 4.90003 4.92817 5.06569 5.17063 5.24832 5.35275 5.37685 5.67365 6.07493 6.13271 6.52383 6.86924 6.89777 7.02088 8.57743 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.025310 B = 0.002323 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.010264 B =12051.740801 C =12284.539566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.082 3.918 4 H 0.144 0.856 5 F -0.206 7.206 6 C 0.486 3.514 7 O -0.557 6.557 8 N -0.599 5.599 9 C 0.059 3.941 10 C 0.118 3.882 11 C 0.123 3.877 12 H 0.123 0.877 13 C -0.133 4.133 14 C 0.100 3.900 15 N -0.644 5.644 16 C 0.553 3.447 17 O -0.561 6.561 18 C -0.102 4.102 19 S -0.172 6.172 20 C -0.530 4.530 21 H 0.060 0.940 22 C 0.045 3.955 23 N -0.915 5.915 24 Si 0.916 3.084 25 H -0.259 1.259 26 H -0.257 1.257 27 H -0.239 1.239 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.502 -1.576 7.894 35.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.043 3.957 4 H 0.161 0.839 5 F -0.187 7.187 6 C 0.272 3.728 7 O -0.434 6.434 8 N -0.332 5.332 9 C -0.082 4.082 10 C -0.006 4.006 11 C 0.020 3.980 12 H 0.141 0.859 13 C -0.171 4.171 14 C -0.021 4.021 15 N -0.381 5.381 16 C 0.342 3.658 17 O -0.439 6.439 18 C -0.253 4.253 19 S 0.055 5.945 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.553 5.553 24 Si 0.738 3.262 25 H -0.184 1.184 26 H -0.182 1.182 27 H -0.163 1.163 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.910 -0.111 7.153 34.656 hybrid contribution 1.316 -0.803 -0.398 1.593 sum -32.593 -0.914 6.755 33.298 Atomic orbital electron populations 1.21769 0.92624 1.03389 1.02967 1.22014 0.98461 0.92613 1.04706 1.21990 0.89827 0.97658 0.86193 0.83897 1.92857 1.91882 1.84294 1.49709 1.21620 0.91623 0.79933 0.79615 1.90723 1.67046 1.40350 1.45264 1.47890 1.05954 1.41285 1.38090 1.22328 0.96640 0.95637 0.93562 1.21400 0.79946 1.00464 0.98761 1.23425 0.77856 0.96902 0.99824 0.85930 1.23546 0.96911 0.93309 1.03286 1.23522 0.94925 0.81286 1.02414 1.50193 1.06253 1.14008 1.67663 1.19637 0.84101 0.86125 0.75940 1.90662 1.85374 1.15676 1.52221 1.23166 0.94064 1.01972 1.06122 1.84637 1.02933 1.15690 1.91241 1.22433 0.94628 0.96228 1.54507 0.92144 1.25585 0.94305 1.02868 0.93282 1.70014 1.00652 1.37585 1.47066 0.85847 0.80560 0.79816 0.80020 1.18375 1.18160 1.16285 0.90233 0.93038 0.90944 0.91975 0.88099 0.88793 0.90637 0.87939 0.89951 0.92872 0.86608 0.90025 0.86458 0.89722 0.87265 0.88010 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.83 71.98 0.71 -0.30 16 2 C -0.14 -1.47 5.42 30.59 0.17 -1.31 16 3 C 0.08 1.02 3.46 29.85 0.10 1.13 16 4 H 0.14 0.55 6.01 -2.39 -0.01 0.53 16 5 F -0.21 -3.93 16.75 44.97 0.75 -3.18 16 6 C 0.49 9.27 6.63 87.66 0.58 9.85 16 7 O -0.56 -15.74 14.28 -3.01 -0.04 -15.78 16 8 N -0.60 -9.32 2.79 -846.75 -2.36 -11.68 16 9 C 0.06 0.32 9.30 127.77 1.19 1.51 16 10 C 0.12 2.69 4.89 86.38 0.42 3.11 16 11 C 0.12 2.38 4.52 45.09 0.20 2.58 16 12 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 13 C -0.13 -2.12 7.22 31.25 0.23 -1.89 16 14 C 0.10 1.76 8.61 86.48 0.74 2.50 16 15 N -0.64 -17.20 3.49 -813.92 -2.84 -20.04 16 16 C 0.55 20.68 7.94 87.66 0.70 21.38 16 17 O -0.56 -24.85 16.15 -3.03 -0.05 -24.90 16 18 C -0.10 -4.19 5.91 71.24 0.42 -3.77 16 19 S -0.17 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -31.79 10.04 67.95 0.68 -31.11 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.71 5.50 84.86 0.47 3.17 16 23 N -0.92 -56.62 13.97 21.65 0.30 -56.32 16 24 Si 0.92 45.89 27.74 68.60 1.90 47.80 16 25 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.05 0.47 7.94 -2.39 -0.02 0.45 16 30 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 32 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.09 0.43 7.90 -2.39 -0.02 0.41 16 34 H 0.08 0.31 8.03 -2.38 -0.02 0.29 16 35 H 0.10 -0.11 7.51 -2.39 -0.02 -0.13 16 36 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.05 1.66 7.34 -2.38 -0.02 1.64 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.83 6.34 -2.39 -0.02 1.81 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 43 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 44 H 0.28 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -84.25 380.76 4.18 -80.07 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.95 Total: 7.25 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.61 Total: 6.85 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.90 Total: -88.04 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.09 Total: -40.68 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -84.25 4.18 -80.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739802718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.805 kcal (2) G-P(sol) polarization free energy of solvation -84.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds