Wall clock time and date at job start Tue Mar 31 2020 16:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46940 * 2 1 4 4 N 1.46498 * 109.47405 * 120.00544 * 2 1 3 5 5 C 1.39985 * 119.99724 * 274.99884 * 4 2 1 6 6 C 1.40426 * 125.97832 * 0.02562 * 5 4 2 7 7 C 1.35253 * 107.86301 * 179.97438 * 6 5 4 8 8 N 1.34963 * 107.86282 * 359.97438 * 7 6 5 9 9 C 1.46494 * 125.97537 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47291 * 124.99603 * 9 8 7 11 11 H 1.07996 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99828 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00099 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99607 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47601 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46825 * 120.00483 * 14 12 10 17 17 H 1.48500 * 109.47403 * 240.00183 * 14 12 10 18 18 N 1.31230 * 125.97238 * 179.68888 * 5 4 2 19 19 C 1.50703 * 109.46895 * 240.00679 * 2 1 3 20 20 O 1.21286 * 120.00299 * 239.99783 * 19 2 1 21 21 N 1.34779 * 119.99860 * 59.99975 * 19 2 1 22 22 C 1.39923 * 119.99555 * 174.73605 * 21 19 2 23 23 C 1.38904 * 120.05997 * 326.52166 * 22 21 19 24 24 C 1.38097 * 119.98319 * 179.72845 * 23 22 21 25 25 C 1.38276 * 120.09202 * 0.57841 * 24 23 22 26 26 C 1.38491 * 120.11503 * 359.69844 * 25 24 23 27 27 F 1.35102 * 119.98874 * 180.02562 * 26 25 24 28 28 C 1.38354 * 120.01586 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46666 * 299.99110 * 1 2 3 31 31 H 1.08994 * 109.47381 * 59.99774 * 1 2 3 32 32 H 0.97000 * 120.00034 * 95.00041 * 4 2 1 33 33 H 1.07998 * 126.06998 * 359.97438 * 6 5 4 34 34 H 1.07997 * 126.06856 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47020 * 245.00509 * 9 8 7 36 36 H 1.09004 * 109.47108 * 4.99903 * 9 8 7 37 37 H 0.97005 * 119.99658 * 179.97438 * 13 12 10 38 38 H 0.97001 * 120.00340 * 354.72644 * 21 19 2 39 39 H 1.08004 * 120.00610 * 0.02562 * 23 22 21 40 40 H 1.07997 * 119.96038 * 180.30422 * 24 23 22 41 41 H 1.08001 * 119.94103 * 179.72664 * 25 24 23 42 42 H 1.08001 * 120.04511 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1522 0.0076 2.4019 6 6 1.8557 1.3649 2.6065 7 6 2.1169 1.6560 3.9013 8 7 2.5611 0.5295 4.4974 9 6 2.9586 0.3981 5.9012 10 6 2.1725 -0.7155 6.5438 11 1 1.4495 -1.2702 5.9643 12 6 2.3772 -1.0269 7.8713 13 7 3.2580 -0.3517 8.5768 14 14 1.4033 -2.4078 8.6675 15 1 0.4843 -3.0066 7.6665 16 1 2.3377 -3.4488 9.1661 17 1 0.6142 -1.8662 9.8030 18 7 2.5707 -0.4933 3.5404 19 6 2.0324 -0.7103 -1.2306 20 8 2.7297 -1.6964 -1.1195 21 7 1.7067 -0.2496 -2.4546 22 6 2.2612 -0.8412 -3.5950 23 6 3.5534 -1.3494 -3.5568 24 6 4.0970 -1.9379 -4.6816 25 6 3.3612 -2.0115 -5.8500 26 6 2.0746 -1.5009 -5.8942 27 9 1.3577 -1.5747 -7.0369 28 6 1.5233 -0.9154 -4.7684 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2492 -1.6319 1.1524 33 1 1.4851 2.0540 1.8622 34 1 1.9913 2.6187 4.3744 35 1 4.0232 0.1711 5.9577 36 1 2.7583 1.3331 6.4246 37 1 3.4017 -0.5706 9.5109 38 1 1.0879 0.4918 -2.5450 39 1 4.1310 -1.2886 -2.6462 40 1 5.0999 -2.3374 -4.6500 41 1 3.7904 -2.4684 -6.7295 42 1 0.5198 -0.5175 -4.8022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086155170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:08 Heat of formation + Delta-G solvation = 34.781181 kcal Electronic energy + Delta-G solvation = -26564.870135 eV Core-core repulsion = 22461.494461 eV Total energy + Delta-G solvation = -4103.375673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.26835 -41.07652 -40.21484 -38.82889 -35.89769 -35.22890 -33.48245 -31.81015 -31.06220 -30.20606 -29.56719 -28.71463 -26.50847 -24.98559 -23.36609 -23.08545 -22.61947 -20.91234 -20.14592 -19.49405 -18.63239 -17.74079 -16.81458 -16.56853 -16.51778 -16.32917 -16.10720 -15.89708 -15.43207 -15.30008 -14.66707 -14.31923 -14.25130 -14.03749 -13.84374 -13.55056 -13.25285 -12.89504 -12.74091 -12.63041 -12.30094 -12.28052 -12.22745 -11.81869 -11.77376 -11.63202 -10.97513 -10.83207 -10.81959 -10.23452 -10.19568 -10.02048 -9.64219 -9.30401 -9.25761 -8.62246 -8.60225 -7.96302 -7.09913 -6.21114 -4.25703 0.69430 0.79048 2.15817 2.36330 2.88024 3.21960 3.24266 3.24350 3.32009 3.39577 3.69005 3.90251 4.12618 4.16638 4.36369 4.38171 4.57767 4.72629 4.82004 4.91049 4.96244 5.03282 5.13871 5.27582 5.49015 5.52738 5.56760 5.67620 5.76748 5.90157 5.92712 5.99941 6.03103 6.19927 6.43588 6.52628 6.72314 6.85457 7.01237 7.16298 7.57891 7.65947 7.74178 7.90480 8.11692 8.16176 8.78289 8.90318 9.39825 10.87328 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.001905 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.696069 B =14694.098305 C =14911.965233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.160 3.840 3 H 0.108 0.892 4 N -0.712 5.712 5 C 0.308 3.692 6 C -0.336 4.336 7 C 0.068 3.932 8 N -0.325 5.325 9 C 0.259 3.741 10 C -0.524 4.524 11 H 0.069 0.931 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.327 5.327 19 C 0.514 3.486 20 O -0.503 6.503 21 N -0.673 5.673 22 C 0.181 3.819 23 C -0.132 4.132 24 C -0.069 4.069 25 C -0.172 4.172 26 C 0.117 3.883 27 F -0.138 7.138 28 C -0.185 4.185 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.408 0.592 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.415 0.585 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 4.388 -27.672 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.049 3.951 3 H 0.125 0.875 4 N -0.356 5.356 5 C 0.052 3.948 6 C -0.370 4.370 7 C -0.084 4.084 8 N -0.104 5.104 9 C 0.141 3.859 10 C -0.563 4.563 11 H 0.088 0.912 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.734 3.266 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.158 5.158 19 C 0.301 3.699 20 O -0.376 6.376 21 N -0.319 5.319 22 C 0.086 3.914 23 C -0.152 4.152 24 C -0.088 4.088 25 C -0.191 4.191 26 C 0.097 3.903 27 F -0.117 7.117 28 C -0.206 4.206 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.148 0.852 34 H 0.181 0.819 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.252 0.748 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.572 2.802 -26.622 26.892 hybrid contribution -1.185 0.121 -0.151 1.200 sum -3.757 2.923 -26.772 27.192 Atomic orbital electron populations 1.22342 0.93686 1.03464 1.03251 1.20380 0.94918 0.97022 0.82785 0.87469 1.42973 1.76673 1.12182 1.03819 1.19057 0.98309 0.90594 0.86865 1.20707 1.23509 0.95433 0.97325 1.22346 0.99392 0.93269 0.93395 1.49043 1.46825 1.04315 1.10246 1.19685 0.97113 0.99248 0.69848 1.21306 1.22647 1.17000 0.95339 0.91236 1.24951 0.95434 0.96927 0.96895 1.69929 1.33869 1.40677 1.09021 0.86286 0.79779 0.81487 0.79029 1.19563 1.20718 1.20830 1.77493 1.29705 1.12568 0.96040 1.21159 0.79928 0.84429 0.84422 1.90749 1.36075 1.24681 1.86077 1.43545 1.47784 1.36437 1.04154 1.17407 0.91816 0.96183 0.85949 1.21303 0.93657 1.00264 0.99992 1.20932 0.99964 0.96675 0.91201 1.21160 0.93587 1.04123 1.00240 1.17332 0.90522 1.00303 0.82109 1.91513 1.77792 1.94410 1.47975 1.20771 1.01178 1.06316 0.92334 0.91657 0.90007 0.91824 0.75429 0.85190 0.81933 0.93871 0.92790 0.92454 0.74827 0.83944 0.84459 0.84628 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.40 37.16 0.35 -1.07 16 2 C 0.16 1.66 2.99 -69.08 -0.21 1.46 16 3 H 0.11 0.96 7.14 -51.93 -0.37 0.59 16 4 N -0.71 -10.89 5.16 -54.70 -0.28 -11.17 16 5 C 0.31 5.80 8.14 -154.55 -1.26 4.54 16 6 C -0.34 -5.62 9.92 -39.82 -0.40 -6.01 16 7 C 0.07 1.26 11.44 -17.24 -0.20 1.06 16 8 N -0.33 -7.44 3.67 -62.57 -0.23 -7.67 16 9 C 0.26 6.59 6.26 -5.20 -0.03 6.56 16 10 C -0.52 -14.72 9.23 -34.44 -0.32 -15.04 16 11 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 14 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 N -0.33 -7.60 12.42 31.41 0.39 -7.21 16 19 C 0.51 5.39 6.96 -10.98 -0.08 5.32 16 20 O -0.50 -7.15 13.53 5.55 0.08 -7.07 16 21 N -0.67 -4.99 5.27 -9.87 -0.05 -5.04 16 22 C 0.18 1.58 6.27 -83.71 -0.53 1.06 16 23 C -0.13 -1.26 8.65 -39.39 -0.34 -1.60 16 24 C -0.07 -0.54 10.04 -39.62 -0.40 -0.94 16 25 C -0.17 -1.30 10.02 -39.47 -0.40 -1.70 16 26 C 0.12 0.99 7.30 -39.45 -0.29 0.70 16 27 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 28 C -0.18 -1.43 9.94 -39.33 -0.39 -1.82 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.31 7.45 -51.93 -0.39 -0.08 16 32 H 0.41 6.72 7.92 -40.82 -0.32 6.40 16 33 H 0.13 1.68 7.45 -52.49 -0.39 1.29 16 34 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.34 8.07 -51.93 -0.42 0.92 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.41 1.64 8.09 -40.82 -0.33 1.31 16 39 H 0.14 1.56 6.42 -52.48 -0.34 1.22 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -33.57 368.80 -8.42 -41.99 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.06 Total: 5.93 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.57 Total: -5.91 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.56 Total: -55.89 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.08 Total: -7.07 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.57 -8.42 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086155170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.773 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds