Wall clock time and date at job start Tue Mar 31 2020 16:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99895 * 2 1 4 4 O 1.20823 * 120.00278 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99977 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47139 * 300.00263 * 5 3 2 7 7 C 1.53000 * 109.47400 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.46706 * 59.99853 * 7 6 5 9 9 O 1.45204 * 109.47024 * 180.02562 * 8 7 6 10 10 C 1.34704 * 117.00075 * 270.00221 * 9 8 7 11 11 O 1.21470 * 120.00029 * 359.97438 * 10 9 8 12 12 C 1.47763 * 119.99737 * 179.97438 * 10 9 8 13 13 C 1.39967 * 120.03439 * 359.72843 * 12 10 9 14 14 C 1.38314 * 120.35348 * 179.74424 * 13 12 10 15 15 C 1.37765 * 120.41809 * 0.55020 * 14 13 12 16 16 C 1.40746 * 120.05109 * 359.70452 * 15 14 13 17 17 C 1.41439 * 120.17860 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99842 * 334.93102 * 17 16 15 19 19 C 1.39932 * 120.00270 * 154.92099 * 17 16 15 20 20 N 1.30832 * 120.00162 * 342.59540 * 19 17 16 21 21 Si 1.86806 * 120.00056 * 162.59015 * 19 17 16 22 22 H 1.48504 * 109.46942 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46807 * 120.00173 * 21 19 17 24 24 H 1.48495 * 109.46931 * 240.00418 * 21 19 17 25 25 C 1.39056 * 120.03055 * 179.97438 * 12 10 9 26 26 C 1.53002 * 109.47311 * 300.00202 * 8 7 6 27 27 C 1.52991 * 109.47214 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46654 * 299.99134 * 1 2 3 30 30 H 1.09000 * 109.47513 * 59.99728 * 1 2 3 31 31 H 1.09003 * 109.46916 * 60.00054 * 5 3 2 32 32 H 1.08999 * 109.47060 * 300.00226 * 6 5 3 33 33 H 1.09005 * 109.47239 * 60.00024 * 6 5 3 34 34 H 1.08997 * 109.46522 * 300.00212 * 7 6 5 35 35 H 1.08996 * 109.47361 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47423 * 60.00409 * 8 7 6 37 37 H 1.07993 * 119.82126 * 359.97438 * 13 12 10 38 38 H 1.08001 * 119.79366 * 180.27610 * 14 13 12 39 39 H 1.08004 * 119.97172 * 179.72209 * 15 14 13 40 40 H 0.96998 * 120.00234 * 179.97438 * 20 19 17 41 41 H 1.08008 * 120.20111 * 359.96310 * 25 12 10 42 42 H 1.08999 * 109.47060 * 299.99924 * 26 8 7 43 43 H 1.09001 * 109.46999 * 180.02562 * 26 8 7 44 44 H 1.09010 * 109.46998 * 300.00042 * 27 5 3 45 45 H 1.09003 * 109.47569 * 59.99922 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.1139 0.5810 1.2483 7 6 5.6419 0.6605 1.2474 8 6 6.0761 2.1276 1.2473 9 8 7.5262 2.2031 1.2458 10 6 8.1381 2.2347 2.4455 11 8 7.4784 2.2005 3.4649 12 6 9.6118 2.3108 2.5213 13 6 10.3729 2.3445 1.3471 14 6 11.7525 2.4211 1.4103 15 6 12.3941 2.4538 2.6290 16 6 11.6461 2.4154 3.8206 17 6 12.3021 2.4494 5.0732 18 1 13.3222 2.1050 5.1581 19 6 11.6294 2.9292 6.2025 20 7 10.5472 3.6508 6.0619 21 14 12.2766 2.5395 7.9110 22 1 13.5057 1.7136 7.7982 23 1 12.5944 3.8047 8.6205 24 1 11.2447 1.7907 8.6723 25 6 10.2442 2.3440 3.7593 26 6 5.5285 2.8215 -0.0016 27 6 4.0001 2.7420 0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7810 -0.8909 32 1 3.7245 1.0749 2.1385 33 1 3.8049 -0.4643 1.2482 34 1 6.0308 0.1664 0.3571 35 1 6.0319 0.1658 2.1369 36 1 5.6871 2.6218 2.1376 37 1 9.8801 2.3143 0.3866 38 1 12.3306 2.4511 0.4986 39 1 13.4720 2.5091 2.6699 40 1 10.0807 3.9831 6.8448 41 1 9.6613 2.3148 4.6681 42 1 5.9176 2.3273 -0.8918 43 1 5.8383 3.8665 -0.0019 44 1 3.6100 3.2368 -0.8894 45 1 3.6108 3.2357 0.8906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189167777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:21 Heat of formation + Delta-G solvation = -177.453261 kcal Electronic energy + Delta-G solvation = -27780.376944 eV Core-core repulsion = 23726.672898 eV Total energy + Delta-G solvation = -4053.704047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02619 -39.99229 -38.20791 -37.23792 -36.64747 -35.43739 -33.76332 -31.24479 -30.98088 -30.11092 -29.51178 -27.95079 -25.44120 -24.41492 -22.97065 -22.81070 -21.10155 -20.93337 -20.10111 -19.68620 -17.88884 -17.80261 -17.10650 -16.76729 -16.58118 -16.01998 -15.47622 -15.17046 -14.78922 -14.44054 -14.36624 -14.17981 -13.70822 -13.53621 -13.26183 -13.14475 -12.87523 -12.71851 -12.52158 -12.44214 -12.37175 -11.83293 -11.68821 -11.45765 -11.32048 -11.22761 -11.14539 -11.11608 -10.98293 -10.77018 -10.62613 -10.53730 -10.48235 -10.21175 -9.92723 -9.73820 -9.46686 -9.26688 -7.76108 -7.57268 -6.84504 -4.45717 1.89614 1.96833 2.38552 2.75517 3.05699 3.09926 3.11735 3.17631 3.58663 3.88932 4.25132 4.38674 4.43172 4.56447 4.75668 4.81141 4.84666 4.90958 4.92169 5.11944 5.14504 5.19541 5.23657 5.30652 5.52252 5.55064 5.71724 5.78752 5.83509 5.90464 5.91424 6.07320 6.08990 6.12323 6.20184 6.38564 6.64103 6.91993 6.94373 7.00490 7.15253 7.29377 7.43380 7.66476 7.73643 7.89103 8.08541 8.42623 8.55936 8.75151 8.77312 10.10942 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.019985 B = 0.002317 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.731400 B =12083.965167 C =12949.454602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.082 4.082 6 C -0.106 4.106 7 C -0.133 4.133 8 C 0.084 3.916 9 O -0.350 6.350 10 C 0.511 3.489 11 O -0.517 6.517 12 C -0.115 4.115 13 C -0.193 4.193 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.095 3.905 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.271 1.271 25 C -0.089 4.089 26 C -0.114 4.114 27 C -0.100 4.100 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.284 0.716 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 -5.793 -10.792 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.171 4.171 8 C 0.029 3.971 9 O -0.267 6.267 10 C 0.359 3.641 11 O -0.407 6.407 12 C -0.117 4.117 13 C -0.213 4.213 14 C -0.123 4.123 15 C -0.221 4.221 16 C 0.092 3.908 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.412 5.412 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.108 4.108 26 C -0.151 4.151 27 C -0.137 4.137 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.153 0.847 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.295 -5.368 -10.353 19.234 hybrid contribution -0.180 0.006 0.845 0.864 sum -15.475 -5.361 -9.507 18.937 Atomic orbital electron populations 1.23275 0.76405 1.03724 1.02554 1.86522 1.23382 1.33553 1.84010 1.23883 0.92074 0.81256 0.71908 1.90669 1.67218 1.36376 1.45093 1.21227 0.86554 0.99835 1.02470 1.21484 0.95481 1.01408 0.95982 1.21922 0.94695 0.96513 1.03964 1.22634 0.78375 0.96339 0.99789 1.86656 1.21614 1.84501 1.33970 1.21886 0.89997 0.71650 0.80614 1.90751 1.66938 1.47085 1.35918 1.18845 0.86544 1.10484 0.95806 1.20564 0.93620 1.11337 0.95764 1.20517 0.93870 1.01263 0.96607 1.21190 0.98335 1.10243 0.92334 1.17552 0.91096 0.89282 0.92824 1.19595 1.00242 1.37237 0.91809 0.89913 1.25966 0.94251 0.92529 1.01856 1.69785 1.15393 1.23068 1.32939 0.86224 0.80042 0.79232 0.81065 1.18299 1.19901 1.19571 1.21660 0.95094 0.98910 0.95166 1.21590 0.93952 1.01988 0.97583 1.21430 0.94869 0.93183 1.04264 0.88060 0.91861 0.91932 0.86858 0.90934 0.89867 0.90436 0.90369 0.89773 0.87852 0.88539 0.88350 0.90476 0.84728 0.90363 0.90129 0.90119 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.37 10.47 -39.26 -0.41 -3.78 16 3 C 0.47 4.91 7.26 36.01 0.26 5.17 16 4 O -0.51 -6.63 15.73 -18.75 -0.29 -6.92 16 5 C -0.08 -0.75 2.63 -91.77 -0.24 -0.99 16 6 C -0.11 -1.03 5.13 -26.73 -0.14 -1.17 16 7 C -0.13 -1.60 5.56 -26.73 -0.15 -1.75 16 8 C 0.08 1.19 2.46 -26.73 -0.07 1.13 16 9 O -0.35 -6.33 9.12 -40.50 -0.37 -6.70 16 10 C 0.51 11.24 7.87 34.62 0.27 11.51 16 11 O -0.52 -12.36 15.59 -19.24 -0.30 -12.66 16 12 C -0.12 -2.75 5.87 -105.05 -0.62 -3.36 16 13 C -0.19 -4.18 9.62 -38.91 -0.37 -4.56 16 14 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 15 C -0.20 -4.70 9.78 -38.81 -0.38 -5.08 16 16 C 0.09 2.47 5.57 -106.88 -0.59 1.87 16 17 C -0.46 -11.86 9.05 -37.73 -0.34 -12.20 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -20.52 10.97 55.55 0.61 -19.91 16 21 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 C -0.09 -2.33 8.23 -38.42 -0.32 -2.65 16 26 C -0.11 -1.24 5.59 -26.71 -0.15 -1.39 16 27 C -0.10 -0.98 4.49 -26.71 -0.12 -1.10 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.33 7.16 -51.93 -0.37 0.96 16 37 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 41 H 0.14 3.78 5.76 -52.48 -0.30 3.48 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.73 8.10 -51.92 -0.42 0.31 16 45 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -30.14 378.01 -9.01 -39.14 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.53 Total: 5.83 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.37 Total: -14.15 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.38 Total: -30.05 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.14 -9.01 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189167777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.312 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds