Wall clock time and date at job start Tue Mar 31 2020 16:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00144 * 2 1 4 4 O 1.20830 * 119.99733 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00284 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46936 * 299.99959 * 5 3 2 7 7 C 1.53001 * 109.46907 * 59.99651 * 5 3 2 8 8 C 1.53001 * 109.46983 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47133 * 300.00111 * 8 7 5 10 10 C 1.53001 * 109.47276 * 60.00068 * 9 8 7 11 11 H 1.09006 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.45196 * 109.47178 * 59.99989 * 10 9 8 13 13 C 1.34703 * 116.99952 * 90.00274 * 12 10 9 14 14 O 1.21469 * 120.00229 * 359.97438 * 13 12 10 15 15 C 1.47774 * 119.99921 * 180.02562 * 13 12 10 16 16 C 1.39962 * 120.02803 * 359.97438 * 15 13 12 17 17 C 1.38322 * 120.35043 * 179.97438 * 16 15 13 18 18 C 1.37765 * 120.41756 * 359.97438 * 17 16 15 19 19 C 1.40755 * 120.04887 * 359.97438 * 18 17 16 20 20 C 1.41440 * 120.16965 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00391 * 24.36442 * 20 19 18 22 22 C 1.39943 * 119.99735 * 204.35192 * 20 19 18 23 23 N 1.30825 * 119.99870 * 17.74297 * 22 20 19 24 24 Si 1.86794 * 119.99781 * 197.73250 * 22 20 19 25 25 H 1.48494 * 109.47476 * 60.00680 * 24 22 20 26 26 H 1.48503 * 109.46941 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47372 * 300.00336 * 24 22 20 28 28 C 1.39049 * 120.02884 * 179.72649 * 15 13 12 29 29 C 1.52999 * 109.47303 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47033 * 300.00142 * 1 2 3 32 32 H 1.08993 * 109.47106 * 60.00004 * 1 2 3 33 33 H 1.08994 * 109.47378 * 299.99952 * 7 5 3 34 34 H 1.09001 * 109.47412 * 60.00032 * 7 5 3 35 35 H 1.09001 * 109.47151 * 59.99712 * 8 7 5 36 36 H 1.08993 * 109.47379 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47410 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47240 * 299.99965 * 9 8 7 39 39 H 1.07998 * 119.82480 * 0.02562 * 16 15 13 40 40 H 1.07997 * 119.79088 * 180.02562 * 17 16 15 41 41 H 1.07998 * 119.97111 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99812 * 180.02562 * 23 22 20 43 43 H 1.08000 * 120.20804 * 359.97438 * 28 15 13 44 44 H 1.09001 * 109.46776 * 299.99821 * 29 5 3 45 45 H 1.08997 * 109.47457 * 59.99629 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1139 0.5810 -1.2483 8 6 5.6418 0.6605 -1.2474 9 6 6.0761 2.1275 -1.2472 10 6 5.5286 2.8215 0.0016 11 1 5.8384 3.8666 0.0019 12 8 6.0468 2.1632 1.1875 13 6 7.2077 2.6289 1.6875 14 8 7.7719 3.5592 1.1473 15 6 7.7954 2.0074 2.8925 16 6 7.1461 0.9352 3.5151 17 6 7.6905 0.3481 4.6430 18 6 8.8778 0.8111 5.1663 19 6 9.5459 1.8878 4.5534 20 6 10.7652 2.3649 5.0882 21 1 11.3847 1.7127 5.6859 22 6 11.1692 3.6821 4.8425 23 7 10.2981 4.5676 4.4319 24 14 12.9520 4.1758 5.1012 25 1 13.8244 3.3623 4.2167 26 1 13.1195 5.6148 4.7746 27 1 13.3295 3.9432 6.5185 28 6 8.9966 2.4840 3.4058 29 6 4.0002 2.7421 -0.0002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 3.8049 -0.4643 -1.2481 34 1 3.7245 1.0748 -2.1386 35 1 6.0308 0.1664 -0.3571 36 1 6.0319 0.1666 -2.1372 37 1 7.1647 2.1843 -1.2471 38 1 5.6871 2.6218 -2.1375 39 1 6.2155 0.5637 3.1122 40 1 7.1821 -0.4791 5.1159 41 1 9.2966 0.3471 6.0470 42 1 10.5782 5.4804 4.2613 43 1 9.5035 3.3083 2.9262 44 1 3.6108 3.2355 -0.8907 45 1 3.6100 3.2368 0.8892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190878642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:19 Heat of formation + Delta-G solvation = -189.341871 kcal Electronic energy + Delta-G solvation = -28425.288770 eV Core-core repulsion = 24371.069195 eV Total energy + Delta-G solvation = -4054.219575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99081 -41.38380 -39.53393 -38.68518 -37.52006 -36.65606 -35.60421 -32.50761 -32.21526 -31.41935 -31.19519 -28.60086 -27.29288 -25.43126 -24.91662 -23.47555 -22.84413 -22.06109 -21.64521 -20.40411 -19.58398 -18.70209 -18.12236 -17.72356 -17.59543 -17.40072 -16.97766 -16.67211 -16.44599 -16.03244 -15.33903 -15.19504 -15.06550 -14.80752 -14.47786 -14.34339 -14.24761 -13.74567 -13.68316 -13.53322 -13.41985 -13.12486 -12.97352 -12.88154 -12.81499 -12.58721 -12.53142 -12.22232 -12.06571 -12.03943 -11.85476 -11.79276 -11.55319 -11.51441 -11.25404 -11.20020 -11.08134 -11.00707 -9.60021 -9.43281 -8.68456 -6.39415 0.16380 0.98292 1.12176 1.37354 1.47304 1.50928 1.71034 1.72222 1.84180 2.18933 2.73152 3.41220 3.57591 3.64872 3.69259 3.85069 3.90807 4.03236 4.18182 4.27184 4.31765 4.34101 4.35489 4.42801 4.48208 4.59762 4.65068 4.72230 4.76521 4.88254 4.92621 4.99152 5.05516 5.06478 5.14809 5.17065 5.20366 5.28634 5.35807 5.38461 5.44282 5.47353 5.83621 5.90974 6.02182 6.24412 6.53824 6.68331 6.84219 6.88783 6.91081 8.28728 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.002681 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.019407 B =10440.421787 C =11041.727250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.077 4.077 6 H 0.117 0.883 7 C -0.099 4.099 8 C -0.112 4.112 9 C -0.135 4.135 10 C 0.082 3.918 11 H 0.071 0.929 12 O -0.337 6.337 13 C 0.516 3.484 14 O -0.547 6.547 15 C -0.128 4.128 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.205 4.205 19 C 0.065 3.935 20 C -0.495 4.495 21 H 0.087 0.913 22 C 0.030 3.970 23 N -0.827 5.827 24 Si 0.983 3.017 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.253 1.253 28 C -0.124 4.124 29 C -0.090 4.090 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.287 0.713 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -9.204 -11.132 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.096 4.096 6 H 0.135 0.865 7 C -0.136 4.136 8 C -0.149 4.149 9 C -0.173 4.173 10 C 0.027 3.973 11 H 0.089 0.911 12 O -0.254 6.254 13 C 0.364 3.636 14 O -0.439 6.439 15 C -0.129 4.129 16 C -0.198 4.198 17 C -0.117 4.117 18 C -0.225 4.225 19 C 0.063 3.937 20 C -0.524 4.524 21 H 0.105 0.895 22 C -0.185 4.185 23 N -0.453 5.453 24 Si 0.803 3.197 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.176 1.176 28 C -0.144 4.144 29 C -0.127 4.127 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.476 -8.400 -11.374 20.236 hybrid contribution 0.652 1.119 0.285 1.326 sum -13.825 -7.281 -11.090 19.160 Atomic orbital electron populations 1.23557 0.74907 1.05732 1.02449 1.86512 1.24871 1.32618 1.83503 1.23992 0.92254 0.81192 0.70915 1.90654 1.67907 1.37370 1.46852 1.21092 0.86001 0.98531 1.03996 0.86483 1.21508 0.95356 1.01822 0.94940 1.21463 0.95159 0.94941 1.03369 1.22005 1.00616 0.97929 0.96743 1.22913 0.93938 0.97216 0.83216 0.91055 1.86592 1.36727 1.58484 1.43614 1.21643 0.78700 0.79980 0.83287 1.90731 1.62177 1.29675 1.61331 1.19099 0.97795 1.00662 0.95343 1.20949 1.01633 0.98045 0.99142 1.20962 0.95399 0.99569 0.95761 1.21496 0.97478 1.01891 1.01586 1.17897 0.93299 0.92089 0.90408 1.19837 1.04914 0.97334 1.30306 0.89474 1.26859 1.03685 0.95951 0.92008 1.69868 1.37384 1.04373 1.33633 0.85232 0.76539 0.77652 0.80242 1.18376 1.19780 1.17646 1.21467 0.95330 1.01097 0.96534 1.21504 0.91083 0.95417 1.04684 0.85000 0.92351 0.91727 0.88808 0.90082 0.92115 0.89133 0.93034 0.87763 0.84793 0.84183 0.86813 0.90206 0.87766 0.87581 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.69 10.47 -51.38 -0.54 -7.23 16 3 C 0.47 10.38 7.26 71.24 0.52 10.90 16 4 O -0.54 -14.72 15.73 21.95 0.35 -14.38 16 5 C -0.08 -1.56 2.49 -11.54 -0.03 -1.59 16 6 H 0.12 2.51 7.68 -2.38 -0.02 2.49 16 7 C -0.10 -1.54 5.13 30.59 0.16 -1.38 16 8 C -0.11 -2.07 5.78 30.59 0.18 -1.89 16 9 C -0.14 -3.09 5.65 30.59 0.17 -2.92 16 10 C 0.08 2.30 2.76 30.61 0.08 2.38 16 11 H 0.07 2.28 7.16 -2.38 -0.02 2.26 16 12 O -0.34 -11.72 7.78 -56.13 -0.44 -12.15 16 13 C 0.52 22.89 7.87 70.34 0.55 23.44 16 14 O -0.55 -27.21 15.59 19.94 0.31 -26.89 16 15 C -0.13 -6.10 5.87 -20.14 -0.12 -6.22 16 16 C -0.18 -7.30 9.62 22.71 0.22 -7.08 16 17 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 18 C -0.20 -9.39 9.78 22.77 0.22 -9.16 16 19 C 0.07 3.48 5.57 -21.32 -0.12 3.36 16 20 C -0.49 -26.33 9.05 23.47 0.21 -26.12 16 21 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 22 C 0.03 1.53 5.14 85.26 0.44 1.97 16 23 N -0.83 -45.35 10.95 21.83 0.24 -45.11 16 24 Si 0.98 38.80 29.59 68.60 2.03 40.83 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 28 C -0.12 -6.80 8.24 23.02 0.19 -6.61 16 29 C -0.09 -2.07 4.24 30.61 0.13 -1.94 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 32 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.35 7.68 -2.39 -0.02 1.33 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.13 4.61 7.59 -2.91 -0.02 4.58 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 43 H 0.10 6.27 5.74 -2.91 -0.02 6.25 16 44 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 45 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -67.77 375.89 7.17 -60.60 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 1.00 Total: 29.36 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.23 Total: -25.03 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.24 Total: -45.11 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.32 Total: -60.65 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -67.77 7.17 -60.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190878642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.745 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds