Wall clock time and date at job start Tue Mar 31 2020 16:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47181 * 2 1 4 4 C 1.46497 * 120.00382 * 274.06310 * 3 2 1 5 5 C 1.50696 * 109.47047 * 264.82621 * 4 3 2 6 6 H 1.07996 * 119.99980 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00170 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46856 * 120.00295 * 9 7 5 12 12 H 1.48501 * 109.47260 * 240.00439 * 9 7 5 13 13 C 1.34785 * 119.99597 * 94.06151 * 3 2 1 14 14 O 1.21598 * 119.99845 * 354.89533 * 13 3 2 15 15 C 1.47504 * 119.99788 * 174.90332 * 13 3 2 16 16 C 1.36635 * 125.76743 * 173.89804 * 15 13 3 17 17 N 1.35060 * 106.79463 * 180.15956 * 16 15 13 18 18 C 1.40274 * 126.61572 * 179.85136 * 17 16 15 19 19 C 1.38850 * 120.03608 * 7.39090 * 18 17 16 20 20 C 1.38082 * 119.95877 * 180.31978 * 19 18 17 21 21 C 1.38508 * 120.03841 * 359.68178 * 20 19 18 22 22 F 1.35097 * 119.96040 * 180.02562 * 21 20 19 23 23 C 1.38468 * 120.08073 * 0.02562 * 21 20 19 24 24 C 1.38125 * 120.04156 * 0.02562 * 23 21 20 25 25 C 1.50693 * 120.01988 * 179.97438 * 24 23 21 26 26 N 1.40218 * 106.77488 * 359.58678 * 17 16 15 27 27 N 1.28748 * 108.38512 * 0.26301 * 26 17 16 28 28 H 1.09003 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47022 * 299.99433 * 1 2 3 30 30 H 1.09001 * 109.47060 * 59.99719 * 1 2 3 31 31 H 1.08999 * 109.47022 * 240.00567 * 2 1 3 32 32 H 1.09001 * 109.47060 * 120.00281 * 2 1 3 33 33 H 1.08998 * 109.47339 * 24.82975 * 4 3 2 34 34 H 1.09005 * 109.47170 * 144.82777 * 4 3 2 35 35 H 0.96999 * 120.00039 * 179.97438 * 8 7 5 36 36 H 1.07989 * 126.60335 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.02466 * 0.04206 * 19 18 17 38 38 H 1.07994 * 119.98106 * 179.69502 * 20 19 18 39 39 H 1.08002 * 119.98011 * 180.02562 * 23 21 20 40 40 H 1.08996 * 109.47364 * 97.11280 * 25 24 23 41 41 H 1.09004 * 109.47336 * 337.10609 * 25 24 23 42 42 H 1.08999 * 109.47045 * 217.10629 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1778 2.1018 -1.2655 5 6 3.6045 1.9815 -1.7357 6 1 4.3207 1.4237 -1.1507 7 6 3.9953 2.5827 -2.9134 8 7 3.1230 3.2616 -3.6260 9 14 5.7635 2.4330 -3.4967 10 1 6.5390 1.6231 -2.5231 11 1 5.7920 1.7701 -4.8252 12 1 6.3651 3.7863 -3.6056 13 6 2.3210 1.9889 1.1644 14 8 2.1015 1.4254 2.2193 15 6 2.9181 3.3377 1.1589 16 6 3.1618 4.1077 2.2610 17 7 3.7071 5.2613 1.8183 18 6 4.1148 6.3496 2.6039 19 6 4.1158 6.2456 3.9885 20 6 4.5111 7.3201 4.7604 21 6 4.9128 8.4989 4.1541 22 9 5.2998 9.5490 4.9108 23 6 4.9182 8.6023 2.7733 24 6 4.5224 7.5299 1.9979 25 6 4.5280 7.6432 0.4953 26 7 3.7928 5.1589 0.4225 27 7 3.3198 4.0147 0.0695 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5112 1.6736 -2.0140 34 1 1.9312 3.1534 -1.1184 35 1 3.3979 3.6849 -4.4543 36 1 2.9558 3.8453 3.2881 37 1 3.8032 5.3264 4.4616 38 1 4.5073 7.2413 5.8374 39 1 5.2322 9.5221 2.3022 40 1 5.4484 7.2119 0.1018 41 1 4.4677 8.6934 0.2098 42 1 3.6718 7.1061 0.0873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271127845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:26 Heat of formation + Delta-G solvation = 48.148664 kcal Electronic energy + Delta-G solvation = -28297.581669 eV Core-core repulsion = 24194.785653 eV Total energy + Delta-G solvation = -4102.796016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.99618 -43.39547 -40.72433 -40.12797 -36.96133 -35.47188 -34.57549 -34.13276 -32.45881 -31.48427 -30.41504 -28.84686 -28.29198 -25.80876 -24.95693 -24.56409 -23.76357 -22.52653 -22.46683 -20.54025 -19.17784 -18.45882 -18.26131 -17.78675 -17.34768 -17.15589 -17.08658 -16.64275 -16.27205 -16.16409 -15.76445 -15.19565 -15.04550 -14.56976 -14.52953 -14.48644 -14.39033 -14.20339 -14.04067 -13.76830 -13.55722 -13.37537 -13.18175 -13.06938 -12.69727 -12.64147 -12.32467 -12.17108 -12.10122 -11.91346 -11.81615 -11.62781 -11.50169 -10.96907 -10.45959 -10.41993 -10.10952 -9.47395 -9.36940 -8.05085 -6.10463 -0.66831 0.00531 0.58885 0.85269 1.03070 1.38602 1.41735 1.50110 2.24730 2.32703 2.38514 2.50621 3.06488 3.23482 3.28120 3.33088 3.53843 3.67569 3.78626 3.94990 4.03292 4.21217 4.30221 4.37974 4.43499 4.54404 4.57579 4.62023 4.68056 4.74847 4.86412 4.92073 4.97405 5.04020 5.11529 5.24010 5.30626 5.33756 5.44577 5.47084 5.77475 5.83045 5.91060 6.23526 6.53076 6.89576 7.06823 7.29946 7.54866 9.03181 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.003837 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.568043 B = 7296.419712 C = 9056.546594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.588 5.588 4 C 0.257 3.743 5 C -0.502 4.502 6 H 0.038 0.962 7 C 0.035 3.965 8 N -0.917 5.917 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.285 1.285 13 C 0.596 3.404 14 O -0.580 6.580 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.311 5.311 18 C 0.097 3.903 19 C -0.085 4.085 20 C -0.126 4.126 21 C 0.103 3.897 22 F -0.135 7.135 23 C -0.135 4.135 24 C -0.049 4.049 25 C -0.119 4.119 26 N -0.096 5.096 27 N -0.163 5.163 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.242 0.758 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 8.683 16.517 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.317 5.317 4 C 0.136 3.864 5 C -0.541 4.541 6 H 0.056 0.944 7 C -0.165 4.165 8 N -0.557 5.557 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.211 1.211 13 C 0.383 3.617 14 O -0.463 6.463 15 C -0.255 4.255 16 C -0.057 4.057 17 N -0.088 5.088 18 C 0.005 3.995 19 C -0.105 4.105 20 C -0.145 4.145 21 C 0.083 3.917 22 F -0.114 7.114 23 C -0.154 4.154 24 C -0.051 4.051 25 C -0.176 4.176 26 N -0.074 5.074 27 N -0.035 5.035 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.258 0.742 37 H 0.189 0.811 38 H 0.197 0.803 39 H 0.182 0.818 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.046 9.160 15.542 18.071 hybrid contribution 0.823 -0.219 -0.003 0.852 sum 1.869 8.941 15.539 18.025 Atomic orbital electron populations 1.22019 0.94500 1.03210 1.01328 1.21532 0.95438 0.81612 1.02829 1.48190 1.61568 1.14576 1.07326 1.19232 0.95893 0.92154 0.79168 1.21269 0.95422 1.31670 1.05746 0.94372 1.25288 0.99714 0.94776 0.96704 1.69998 1.35241 1.35140 1.15329 0.85834 0.82045 0.77491 0.78166 1.20256 1.20182 1.21135 1.16945 0.77513 0.83510 0.83770 1.90661 1.57982 1.66526 1.31097 1.21651 1.14045 0.99842 0.89937 1.23692 0.95092 0.84786 1.02101 1.47892 1.41022 1.12066 1.07846 1.17984 1.05154 0.85916 0.90463 1.21089 0.99069 1.01363 0.88984 1.21254 1.00193 0.90352 1.02711 1.17865 0.99736 0.85241 0.88843 1.91529 1.88491 1.55644 1.75701 1.21086 1.02438 1.00098 0.91750 1.19632 0.96907 0.91073 0.97511 1.21041 1.03507 1.03611 0.89477 1.82287 1.23717 1.14065 0.87329 1.75529 1.04921 0.98664 1.24390 0.89046 0.93350 0.93293 0.90358 0.90344 0.96418 0.94447 0.93002 0.74158 0.81114 0.80307 0.81787 0.91185 0.89107 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.24 71.98 0.74 -3.90 16 2 C 0.11 3.93 6.11 86.38 0.53 4.46 16 3 N -0.59 -25.93 2.47 -829.94 -2.05 -27.98 16 4 C 0.26 13.05 4.77 85.63 0.41 13.46 16 5 C -0.50 -27.55 7.68 25.60 0.20 -27.35 16 6 H 0.04 2.17 7.81 -2.91 -0.02 2.15 16 7 C 0.03 1.93 5.46 84.66 0.46 2.40 16 8 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 9 Si 0.94 44.94 29.54 68.60 2.03 46.96 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 C 0.60 25.67 7.62 86.68 0.66 26.33 16 14 O -0.58 -24.66 16.44 -4.02 -0.07 -24.72 16 15 C -0.12 -4.79 6.58 40.82 0.27 -4.52 16 16 C 0.10 2.99 10.60 83.82 0.89 3.88 16 17 N -0.31 -9.75 3.79 -186.87 -0.71 -10.45 16 18 C 0.10 2.30 6.67 38.07 0.25 2.56 16 19 C -0.08 -1.34 9.47 22.38 0.21 -1.12 16 20 C -0.13 -1.62 10.02 22.30 0.22 -1.40 16 21 C 0.10 1.64 7.30 22.39 0.16 1.80 16 22 F -0.14 -2.23 17.27 44.97 0.78 -1.45 16 23 C -0.13 -2.34 9.65 22.30 0.22 -2.13 16 24 C -0.05 -1.12 5.89 -19.76 -0.12 -1.24 16 25 C -0.12 -3.09 8.70 71.23 0.62 -2.47 16 26 N -0.10 -3.91 9.97 37.02 0.37 -3.54 16 27 N -0.16 -7.56 7.81 -49.98 -0.39 -7.95 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 32 H 0.08 2.76 7.37 -2.39 -0.02 2.74 16 33 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 34 H 0.04 2.07 5.88 -2.38 -0.01 2.06 16 35 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.24 4.90 7.18 -2.92 -0.02 4.88 16 37 H 0.17 1.75 6.86 -2.91 -0.02 1.73 16 38 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.16 2.17 8.05 -2.91 -0.02 2.15 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 1.80 8.04 -2.38 -0.02 1.78 16 42 H 0.07 2.28 5.82 -2.39 -0.01 2.27 16 Total: -1.00 -70.35 360.72 7.02 -63.33 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.06 Total: 7.90 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.72 Total: 10.75 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -2.49 Total: -102.77 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.07 Total: -24.72 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.35 7.02 -63.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271127845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.483 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds