Wall clock time and date at job start Tue Mar 31 2020 16:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36003 * 117.00217 * 2 1 4 4 C 1.38602 * 120.01363 * 0.22232 * 3 2 1 5 5 C 1.38143 * 120.07567 * 180.30550 * 4 3 2 6 6 C 1.38871 * 120.11163 * 359.70182 * 5 4 3 7 7 N 1.40151 * 119.98783 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99629 * 324.91569 * 7 6 5 9 9 O 1.21592 * 120.00217 * 4.60631 * 8 7 6 10 10 N 1.34776 * 119.99667 * 184.60045 * 8 7 6 11 11 C 1.46495 * 119.99977 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47555 * 34.99957 * 11 10 8 13 13 C 1.52996 * 109.47361 * 274.99719 * 11 10 8 14 14 C 1.50698 * 109.47318 * 154.99960 * 11 10 8 15 15 H 1.08001 * 120.00348 * 25.05441 * 14 11 10 16 16 C 1.37880 * 120.00509 * 205.05931 * 14 11 10 17 17 N 1.31517 * 120.00473 * 185.01029 * 16 14 11 18 18 Si 1.86807 * 119.99547 * 5.00442 * 16 14 11 19 19 H 1.48494 * 109.46899 * 94.95841 * 18 16 14 20 20 H 1.48504 * 109.46848 * 214.95647 * 18 16 14 21 21 H 1.48495 * 109.47192 * 334.95623 * 18 16 14 22 22 C 1.38738 * 120.02572 * 0.04439 * 6 5 4 23 23 C 1.38665 * 119.92294 * 359.97438 * 22 6 5 24 24 N 1.40340 * 120.05133 * 179.97438 * 23 22 6 25 25 C 1.35038 * 127.38485 * 0.03087 * 24 23 22 26 26 N 1.30763 * 107.27342 * 179.97438 * 25 24 23 27 27 N 1.28421 * 110.63875 * 359.97438 * 26 25 24 28 28 N 1.28942 * 110.20021 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46984 * 60.00610 * 1 2 3 30 30 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47470 * 300.00211 * 1 2 3 32 32 H 1.08003 * 119.95856 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.94074 * 179.72193 * 5 4 3 34 34 H 0.96998 * 120.00129 * 144.91839 * 7 6 5 35 35 H 0.97001 * 119.99915 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.46748 * 65.00273 * 13 11 10 37 37 H 1.08997 * 109.47853 * 184.99893 * 13 11 10 38 38 H 1.09006 * 109.47302 * 305.00712 * 13 11 10 39 39 H 0.96992 * 119.99845 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.03590 * 179.97438 * 22 6 5 41 41 H 1.07995 * 126.36330 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3744 0.0047 5 6 1.9177 3.6059 -0.0017 6 6 3.3043 3.6828 -0.0065 7 7 3.9365 4.9336 -0.0125 8 6 3.3858 5.9637 -0.6847 9 8 2.2999 5.8321 -1.2158 10 7 4.0387 7.1398 -0.7681 11 6 3.4399 8.2598 -1.4983 12 1 2.3580 8.2426 -1.3667 13 6 3.7746 8.1360 -2.9861 14 6 3.9900 9.5580 -0.9662 15 1 4.9576 9.5784 -0.4868 16 6 3.2580 10.7197 -1.0910 17 7 3.7780 11.8682 -0.7164 18 14 1.5275 10.6624 -1.7924 19 1 0.5456 10.5812 -0.6814 20 1 1.2748 11.8909 -2.5875 21 1 1.3867 9.4698 -2.6658 22 6 4.0639 2.5218 -0.0059 23 6 3.4370 1.2850 0.0001 24 7 4.2028 0.1089 0.0002 25 6 5.5493 0.0073 -0.0045 26 7 5.8426 -1.2670 -0.0018 27 7 4.7729 -1.9776 0.0047 28 7 3.7324 -1.2160 0.0062 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2133 2.3174 0.0087 33 1 1.3276 4.5105 -0.0026 34 1 4.7704 5.0578 0.4672 35 1 4.9047 7.2449 -0.3441 36 1 3.3017 7.2415 -3.3916 37 1 3.4056 9.0141 -3.5160 38 1 4.8552 8.0638 -3.1106 39 1 3.2631 12.6854 -0.8046 40 1 5.1422 2.5814 -0.0101 41 1 6.2532 0.8263 -0.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274798749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:36 Heat of formation + Delta-G solvation = 99.365315 kcal Electronic energy + Delta-G solvation = -27592.713472 eV Core-core repulsion = 23512.058338 eV Total energy + Delta-G solvation = -4080.655133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.35635 -40.92630 -39.79854 -37.91462 -35.89095 -34.92898 -34.10140 -32.49073 -32.43134 -30.68494 -30.25933 -28.94799 -27.29500 -25.37728 -25.31190 -23.82068 -22.90171 -22.06988 -21.17208 -20.10378 -19.12332 -18.69522 -18.09180 -16.87288 -16.84101 -16.50951 -16.44892 -16.01087 -15.92512 -15.23324 -14.80727 -14.69580 -14.36504 -14.32177 -13.56088 -13.43865 -13.31779 -13.11895 -12.70975 -12.60096 -12.47249 -12.34523 -11.96467 -11.78158 -11.59272 -11.45724 -11.25309 -11.19290 -10.92578 -10.66445 -10.62685 -10.05906 -9.94938 -9.69423 -9.32512 -9.17651 -8.81253 -8.39412 -7.89244 -6.32491 -4.36313 0.12540 0.87871 1.40870 1.51538 2.07475 2.72914 2.90008 3.16220 3.18388 3.27340 3.33683 3.58536 3.76616 4.00538 4.23488 4.35847 4.49267 4.58132 4.67895 4.86683 4.87771 4.91247 4.98586 5.06347 5.11684 5.19378 5.23270 5.41876 5.88030 5.93010 6.01341 6.15127 6.21194 6.41331 6.56722 6.60003 6.71921 6.93255 6.97305 7.19942 7.27704 7.41012 8.10802 8.21994 8.45687 8.66718 8.87696 9.28465 10.79174 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002538 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.938973 B =11031.235351 C =11983.037960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.293 6.293 3 C 0.126 3.874 4 C -0.170 4.170 5 C -0.065 4.065 6 C 0.171 3.829 7 N -0.692 5.692 8 C 0.694 3.306 9 O -0.586 6.586 10 N -0.709 5.709 11 C 0.250 3.750 12 H 0.051 0.949 13 C -0.151 4.151 14 C -0.535 4.535 15 H 0.079 0.921 16 C 0.082 3.918 17 N -0.888 5.888 18 Si 0.870 3.130 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.254 1.254 22 C -0.121 4.121 23 C 0.106 3.894 24 N -0.311 5.311 25 C 0.215 3.785 26 N -0.333 5.333 27 N -0.053 5.053 28 N -0.049 5.049 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.407 0.593 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.268 0.732 40 H 0.144 0.856 41 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -19.366 3.227 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.077 3.923 4 C -0.190 4.190 5 C -0.086 4.086 6 C 0.073 3.927 7 N -0.340 5.340 8 C 0.395 3.605 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.147 3.853 12 H 0.069 0.931 13 C -0.210 4.210 14 C -0.573 4.573 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.178 1.178 22 C -0.145 4.145 23 C 0.012 3.988 24 N -0.101 5.101 25 C -0.082 4.082 26 N -0.182 5.182 27 N -0.048 5.048 28 N -0.035 5.035 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.243 0.757 35 H 0.226 0.774 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.736 -20.773 2.706 21.126 hybrid contribution -0.139 1.542 0.070 1.550 sum -2.875 -19.231 2.776 19.642 Atomic orbital electron populations 1.23154 0.78039 1.04369 1.01540 1.86323 1.21437 1.24788 1.87869 1.18539 0.89567 0.85999 0.98227 1.21156 1.00697 0.90676 1.06487 1.21516 0.93478 0.98828 0.94737 1.16991 0.91333 0.83763 1.00597 1.42746 1.28088 1.08142 1.55069 1.16158 0.84487 0.80580 0.79292 1.90866 1.20756 1.82311 1.52444 1.45798 1.22941 1.10608 1.56701 1.19083 0.95009 0.83271 0.87941 0.93108 1.22311 1.00364 0.99613 0.98695 1.20975 1.06040 0.89887 1.40367 0.90315 1.24871 0.98067 0.95100 0.94268 1.69876 1.37586 0.98399 1.46526 0.86955 0.84856 0.78411 0.80149 1.20061 1.20962 1.17842 1.20259 1.00273 0.88352 1.05599 1.16350 0.87215 0.82209 1.13041 1.48882 1.05839 1.06874 1.48491 1.27383 0.84617 0.98292 0.97927 1.74455 1.21745 1.00371 1.21657 1.78077 0.92585 1.23259 1.10877 1.82935 1.18067 0.82572 1.19929 0.92336 0.87883 0.92396 0.83720 0.82349 0.75714 0.77377 0.95150 0.92607 0.93559 0.92170 0.83874 0.74729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -3.18 8.66 -19.75 -0.17 -3.35 16 3 C 0.13 1.37 6.70 -39.07 -0.26 1.11 16 4 C -0.17 -1.71 9.03 -39.48 -0.36 -2.07 16 5 C -0.06 -0.77 8.69 -39.38 -0.34 -1.11 16 6 C 0.17 1.88 6.30 -83.63 -0.53 1.35 16 7 N -0.69 -7.87 5.35 -14.20 -0.08 -7.95 16 8 C 0.69 11.38 8.37 -86.92 -0.73 10.65 16 9 O -0.59 -11.57 13.44 5.28 0.07 -11.50 16 10 N -0.71 -12.36 5.07 -59.82 -0.30 -12.66 16 11 C 0.25 5.43 2.09 -69.09 -0.14 5.29 16 12 H 0.05 1.21 5.16 -51.93 -0.27 0.95 16 13 C -0.15 -3.09 9.05 37.16 0.34 -2.75 16 14 C -0.53 -13.40 9.06 -34.44 -0.31 -13.71 16 15 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 18 Si 0.87 20.19 26.34 -169.99 -4.48 15.71 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.25 -5.75 5.96 56.52 0.34 -5.42 16 22 C -0.12 -1.06 9.40 -39.24 -0.37 -1.42 16 23 C 0.11 1.11 6.72 -83.43 -0.56 0.55 16 24 N -0.31 -3.48 3.86 -11.66 -0.04 -3.52 16 25 C 0.21 1.94 12.16 -90.16 -1.10 0.84 16 26 N -0.33 -4.08 12.16 29.64 0.36 -3.72 16 27 N -0.05 -0.75 13.39 60.35 0.81 0.06 16 28 N -0.05 -0.68 12.08 60.35 0.73 0.05 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.15 1.13 6.29 -52.48 -0.33 0.80 16 33 H 0.16 2.19 6.21 -52.48 -0.33 1.87 16 34 H 0.41 3.20 8.84 -40.82 -0.36 2.84 16 35 H 0.39 5.79 8.58 -40.82 -0.35 5.44 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 1.17 6.89 -51.93 -0.36 0.81 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.14 0.74 6.88 -52.49 -0.36 0.38 16 41 H 0.24 0.82 7.19 -52.49 -0.38 0.45 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -33.94 349.45 -4.95 -38.89 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.42 Total: 5.05 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.47 Total: 1.94 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 2.25 Total: -52.01 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.10 Total: -14.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.48 Total: 15.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.94 -4.95 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274798749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.253 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds