Wall clock time and date at job start Tue Mar 31 2020 16:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 120.00345 * 2 1 4 4 C 1.50705 * 109.47608 * 270.00659 * 3 2 1 5 5 H 1.07998 * 119.99603 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00283 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00013 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00024 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47048 * 89.99391 * 8 6 4 10 10 H 1.48496 * 109.47212 * 209.99578 * 8 6 4 11 11 H 1.48498 * 109.47000 * 330.00054 * 8 6 4 12 12 C 1.34777 * 120.00057 * 180.02562 * 2 1 3 13 13 O 1.21587 * 120.00259 * 179.97438 * 12 2 1 14 14 N 1.34779 * 120.00019 * 359.97438 * 12 2 1 15 15 C 1.39501 * 120.00141 * 180.02562 * 14 12 2 16 16 C 1.36097 * 126.21499 * 0.02562 * 15 14 12 17 17 C 1.39767 * 107.82754 * 179.75904 * 16 15 14 18 18 N 1.30846 * 108.31920 * 0.24261 * 17 16 15 19 19 N 1.35254 * 126.21420 * 180.20246 * 15 14 12 20 20 C 1.46498 * 126.04662 * 359.97438 * 19 15 14 21 21 C 1.50699 * 109.47323 * 270.31488 * 20 19 15 22 22 C 1.38236 * 119.97533 * 269.72760 * 21 20 19 23 23 C 1.38208 * 120.02435 * 179.72483 * 22 21 20 24 24 C 1.38453 * 119.97291 * 0.56882 * 23 22 21 25 25 F 1.35106 * 120.02580 * 179.68219 * 24 23 22 26 26 C 1.38456 * 119.95057 * 359.70657 * 24 23 22 27 27 C 1.38199 * 119.97346 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46476 * 269.99495 * 1 2 3 29 29 H 1.08995 * 109.47041 * 29.99294 * 1 2 3 30 30 H 1.08995 * 109.47078 * 150.00002 * 1 2 3 31 31 H 1.09002 * 109.46806 * 30.00573 * 3 2 1 32 32 H 1.08996 * 109.47630 * 150.00269 * 3 2 1 33 33 H 0.97002 * 119.99806 * 180.02562 * 7 6 4 34 34 H 0.97004 * 120.00191 * 0.02562 * 14 12 2 35 35 H 1.08002 * 126.08955 * 0.03073 * 16 15 14 36 36 H 1.07998 * 125.84326 * 180.28127 * 17 16 15 37 37 H 1.09001 * 109.46987 * 30.31562 * 20 19 15 38 38 H 1.09000 * 109.47082 * 150.31288 * 20 19 15 39 39 H 1.08000 * 119.99152 * 359.97438 * 22 21 20 40 40 H 1.08004 * 120.01046 * 180.25364 * 23 22 21 41 41 H 1.08004 * 120.01527 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.98663 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7332 3.9291 -0.2528 9 1 5.1067 3.5079 0.1229 10 1 3.7481 5.3559 -0.6642 11 1 2.8274 3.7590 0.9116 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1625 -3.5425 -0.0005 16 6 3.5155 -3.6899 0.0000 17 6 3.7968 -5.0590 0.0054 18 7 2.6629 -5.7118 0.0028 19 7 1.6170 -4.7802 -0.0044 20 6 0.1855 -5.0913 -0.0088 21 6 -0.3109 -5.1931 1.4105 22 6 -0.2893 -6.4110 2.0640 23 6 -0.7390 -6.5044 3.3675 24 6 -1.2221 -5.3799 4.0148 25 9 -1.6679 -5.4713 5.2870 26 6 -1.2485 -4.1617 3.3573 27 6 -0.7922 -4.0694 2.0561 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.8225 4.0834 -3.0898 34 1 0.4950 -2.3345 -0.0005 35 1 4.2424 -2.8912 0.0009 36 1 4.7816 -5.5022 0.0114 37 1 -0.3566 -4.3005 -0.5274 38 1 0.0213 -6.0399 -0.5200 39 1 0.0827 -7.2891 1.5572 40 1 -0.7183 -7.4553 3.8793 41 1 -1.6256 -3.2839 3.8612 42 1 -0.8124 -3.1191 1.5432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275286032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:49 Heat of formation + Delta-G solvation = 35.483656 kcal Electronic energy + Delta-G solvation = -27955.809165 eV Core-core repulsion = 23852.463954 eV Total energy + Delta-G solvation = -4103.345212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98344 -42.58277 -40.94397 -40.08161 -36.86715 -36.12168 -34.89948 -34.56594 -32.20011 -31.35018 -30.70871 -29.53045 -27.45081 -27.08064 -24.85454 -24.18083 -23.06387 -22.64627 -21.61083 -20.59376 -19.56212 -19.12663 -18.69808 -18.22995 -17.43305 -17.28237 -17.06749 -16.69099 -16.65743 -16.13497 -15.85737 -15.43270 -15.10996 -14.96010 -14.76680 -14.57311 -14.53751 -14.43060 -14.10995 -13.99842 -13.68841 -13.30253 -13.24680 -13.06012 -12.95528 -12.84548 -12.41664 -12.13445 -12.03293 -11.94853 -11.74663 -11.68759 -11.02355 -10.79504 -10.15334 -10.02831 -9.74393 -9.58295 -8.96570 -8.30587 -6.35907 -0.10967 0.19215 0.81503 1.00943 1.37467 1.42069 1.49256 1.84386 1.90164 2.29399 2.34506 2.58807 2.87175 3.05003 3.19443 3.46390 3.54020 3.75251 3.88389 4.13325 4.18229 4.19899 4.28805 4.40149 4.50562 4.59958 4.63764 4.76131 4.84492 4.88621 4.89450 4.93437 5.01124 5.06986 5.14584 5.17008 5.37039 5.46971 5.53797 5.77838 5.79959 5.83719 6.07930 6.27160 6.66013 6.69210 6.93036 7.25355 7.48258 8.86388 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.003074 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.088397 B = 9105.903846 C =10220.326965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.240 3.760 4 C -0.536 4.536 5 H 0.028 0.972 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.233 1.233 12 C 0.703 3.297 13 O -0.598 6.598 14 N -0.646 5.646 15 C 0.330 3.670 16 C -0.317 4.317 17 C 0.065 3.935 18 N -0.304 5.304 19 N -0.379 5.379 20 C 0.165 3.835 21 C -0.131 4.131 22 C -0.062 4.062 23 C -0.159 4.159 24 C 0.088 3.912 25 F -0.148 7.148 26 C -0.159 4.159 27 C -0.076 4.076 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.210 0.790 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.831 -18.926 12.232 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.118 3.882 4 C -0.575 4.575 5 H 0.047 0.953 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.155 1.155 12 C 0.403 3.597 13 O -0.476 6.476 14 N -0.300 5.300 15 C 0.108 3.892 16 C -0.349 4.349 17 C -0.121 4.121 18 N -0.125 5.125 19 N -0.167 5.167 20 C 0.046 3.954 21 C -0.133 4.133 22 C -0.081 4.081 23 C -0.178 4.178 24 C 0.068 3.932 25 F -0.126 7.126 26 C -0.178 4.178 27 C -0.095 4.095 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.257 0.743 35 H 0.162 0.838 36 H 0.227 0.773 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.665 -19.847 12.158 26.990 hybrid contribution 0.442 1.590 0.212 1.664 sum -13.223 -18.257 12.370 25.713 Atomic orbital electron populations 1.22046 0.77456 1.04232 1.03436 1.47048 1.08081 1.04014 1.75303 1.19343 0.92782 0.80757 0.95334 1.21576 1.36792 1.06603 0.92510 0.95324 1.25835 0.95311 0.99007 0.98528 1.70053 1.42743 1.24493 1.21405 0.85730 0.79683 0.77610 0.79997 1.20356 1.20388 1.15536 1.15749 0.84980 0.80534 0.78416 1.90837 1.13439 1.85695 1.57586 1.41789 1.10036 1.01303 1.76877 1.17683 0.91146 0.80169 1.00213 1.21641 0.93970 0.98181 1.21124 1.24091 0.98524 0.91739 0.97756 1.77323 0.94264 1.13280 1.27682 1.48775 1.06802 1.00520 1.60573 1.20842 0.74199 1.06494 0.93885 1.20188 1.01662 0.94442 0.96963 1.21146 0.95459 0.98145 0.93338 1.21388 1.01594 0.98691 0.96122 1.18057 0.99687 0.95795 0.79613 1.91492 1.87084 1.97059 1.37002 1.21346 1.03209 0.97216 0.95991 1.21112 0.95844 0.98660 0.93848 0.89467 0.90324 0.90117 0.92144 0.95844 0.92337 0.74260 0.83840 0.77312 0.86360 0.85311 0.83186 0.83040 0.83123 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 10.20 127.77 1.30 2.96 16 2 N -0.61 -22.66 2.86 -869.33 -2.48 -25.15 16 3 C 0.24 10.96 4.23 85.64 0.36 11.32 16 4 C -0.54 -30.37 9.94 25.60 0.25 -30.11 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.64 5.47 84.66 0.46 1.10 16 7 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.95 42.98 27.47 68.60 1.88 44.86 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.23 -9.22 6.54 99.48 0.65 -8.57 16 12 C 0.70 27.48 8.24 179.05 1.48 28.96 16 13 O -0.60 -29.26 13.05 -3.99 -0.05 -29.31 16 14 N -0.65 -18.45 5.28 -322.30 -1.70 -20.15 16 15 C 0.33 9.98 7.66 131.31 1.01 10.98 16 16 C -0.32 -10.97 9.65 22.14 0.21 -10.75 16 17 C 0.06 1.79 12.01 85.21 1.02 2.81 16 18 N -0.30 -8.08 12.56 -57.09 -0.72 -8.80 16 19 N -0.38 -9.07 3.60 -348.71 -1.26 -10.33 16 20 C 0.17 2.40 6.37 85.63 0.55 2.94 16 21 C -0.13 -1.92 5.46 -19.86 -0.11 -2.03 16 22 C -0.06 -0.89 9.70 22.26 0.22 -0.67 16 23 C -0.16 -2.39 10.03 22.31 0.22 -2.16 16 24 C 0.09 1.53 7.30 22.37 0.16 1.69 16 25 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 26 C -0.16 -2.44 10.03 22.31 0.22 -2.22 16 27 C -0.08 -1.07 9.70 22.26 0.22 -0.86 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.08 1.37 6.36 -2.39 -0.02 1.36 16 31 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 32 H 0.02 1.16 6.85 -2.39 -0.02 1.14 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.42 8.09 4.84 -92.71 -0.45 7.64 16 35 H 0.14 5.96 5.82 -2.91 -0.02 5.95 16 36 H 0.21 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 1.15 7.46 -2.39 -0.02 1.13 16 38 H 0.13 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.14 1.45 7.19 -2.91 -0.02 1.43 16 Total: -1.00 -80.90 361.34 4.90 -76.00 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.57 Total: 19.67 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 7.58 Total: 13.96 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.86 Total: -123.07 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -80.90 4.90 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275286032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.486 kcal (2) G-P(sol) polarization free energy of solvation -80.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds