Wall clock time and date at job start Tue Mar 31 2020 16:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47102 * 332.59724 * 3 2 1 5 5 C 1.36938 * 119.99983 * 264.35387 * 4 3 2 6 6 H 1.07999 * 119.99797 * 196.59612 * 5 4 3 7 7 C 1.38809 * 120.00265 * 16.59758 * 5 4 3 8 8 N 1.31621 * 119.99706 * 22.38862 * 7 5 4 9 9 Si 1.86794 * 120.00235 * 202.39194 * 7 5 4 10 10 H 1.48505 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47142 * 119.99717 * 9 7 5 12 12 H 1.48500 * 109.47357 * 239.99826 * 9 7 5 13 13 C 1.46506 * 119.99999 * 84.35287 * 4 3 2 14 14 C 1.50695 * 109.47260 * 270.00031 * 13 4 3 15 15 O 1.21284 * 120.00241 * 359.97438 * 14 13 4 16 16 N 1.34777 * 119.99902 * 180.02562 * 14 13 4 17 17 C 1.46498 * 119.99928 * 359.97438 * 16 14 13 18 18 C 1.46496 * 119.99964 * 180.02562 * 16 14 13 19 19 C 1.50705 * 109.47307 * 269.99945 * 18 16 14 20 20 C 1.38305 * 119.91881 * 269.72691 * 19 18 16 21 21 C 1.38086 * 120.08100 * 179.76286 * 20 19 18 22 22 C 1.38976 * 119.91659 * 0.50721 * 21 20 19 23 23 S 1.76195 * 120.07973 * 179.72396 * 22 21 20 24 24 C 1.81398 * 103.00171 * 0.02562 * 23 22 21 25 25 C 1.38976 * 119.83776 * 359.74733 * 22 21 20 26 26 C 1.38081 * 119.92242 * 359.97438 * 25 22 21 27 27 H 4.40642 * 5.51355 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46558 * 212.59806 * 3 2 1 29 29 H 1.08994 * 109.46990 * 92.59990 * 3 2 1 30 30 H 0.96996 * 119.99707 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46820 * 150.00009 * 13 4 3 32 32 H 1.09001 * 109.46544 * 30.00276 * 13 4 3 33 33 H 1.09002 * 109.47346 * 270.00123 * 17 16 14 34 34 H 1.08998 * 109.47210 * 30.00359 * 17 16 14 35 35 H 1.09003 * 109.46973 * 150.00093 * 17 16 14 36 36 H 1.08998 * 109.47480 * 30.00059 * 18 16 14 37 37 H 1.08999 * 109.47220 * 150.00379 * 18 16 14 38 38 H 1.07995 * 119.95855 * 359.97438 * 20 19 18 39 39 H 1.07991 * 120.03877 * 180.25533 * 21 20 19 40 40 H 1.08999 * 109.47387 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47290 * 300.00685 * 24 23 22 42 42 H 1.09008 * 109.47106 * 59.99625 * 24 23 22 43 43 H 1.08003 * 120.03818 * 179.97438 * 25 22 21 44 44 H 1.08000 * 119.95728 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2253 0.6357 5 6 3.4732 -1.2206 1.9626 6 1 4.0747 -2.0200 2.3694 7 6 3.0428 -0.1883 2.7849 8 7 1.9893 0.5254 2.4485 9 14 3.9589 0.1879 4.3687 10 1 5.0989 -0.7523 4.5165 11 1 4.4686 1.5820 4.3266 12 1 3.0371 0.0326 5.5226 13 6 3.2619 -2.4565 -0.1483 14 6 1.9727 -3.2332 -0.0760 15 8 1.0396 -2.8013 0.5673 16 7 1.8567 -4.4085 -0.7256 17 6 2.9839 -4.9305 -1.5022 18 6 0.6032 -5.1634 -0.6558 19 6 0.6488 -6.1055 0.5195 20 6 1.1376 -7.3890 0.3562 21 6 1.1855 -8.2534 1.4320 22 6 0.7319 -7.8358 2.6775 23 16 0.7843 -8.9377 4.0514 24 6 1.4941 -10.4467 3.3375 25 6 0.2366 -6.5471 2.8365 26 6 0.1971 -5.6863 1.7576 27 1 -1.0498 -0.0002 0.0003 28 1 3.0089 0.8666 0.5537 29 1 3.0093 0.0474 -1.0266 30 1 1.6889 1.2469 3.0229 31 1 4.0739 -3.0617 0.2549 32 1 3.4771 -2.2052 -1.1869 33 1 2.9187 -4.5658 -2.5274 34 1 3.9196 -4.5940 -1.0557 35 1 2.9521 -6.0200 -1.5014 36 1 -0.2310 -4.4722 -0.5352 37 1 0.4716 -5.7349 -1.5746 38 1 1.4854 -7.7144 -0.6130 39 1 1.5711 -9.2541 1.3046 40 1 1.5744 -11.2113 4.1101 41 1 0.8499 -10.8072 2.5356 42 1 2.4844 -10.2284 2.9374 43 1 -0.1171 -6.2193 3.8029 44 1 -0.1881 -4.6849 1.8805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281502061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:25 Heat of formation + Delta-G solvation = 91.209103 kcal Electronic energy + Delta-G solvation = -26152.239340 eV Core-core repulsion = 22585.230990 eV Total energy + Delta-G solvation = -3567.008350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.63076 -38.48260 -35.81457 -34.76129 -32.09393 -31.38491 -31.16041 -30.94904 -29.14788 -27.73594 -26.78561 -25.90492 -24.99411 -22.56268 -22.16468 -21.17967 -18.59676 -17.74461 -17.38646 -16.59901 -16.10935 -16.01460 -15.68421 -15.10273 -14.91476 -14.67819 -14.54142 -14.05901 -13.83296 -13.51272 -13.48405 -13.23045 -13.05844 -12.70980 -12.59391 -12.41533 -12.28583 -12.10454 -11.80911 -11.47643 -11.37546 -11.17776 -10.96315 -10.85795 -10.67788 -10.36001 -10.20322 -9.95200 -9.69475 -9.03515 -8.90522 -8.70127 -8.58213 -8.23989 -8.13915 -7.45169 -6.95400 -5.71190 -3.12849 1.18555 1.39492 1.43936 2.27294 3.38015 3.44863 3.49028 3.51031 3.61743 3.94389 4.36543 4.58120 4.69162 4.75259 4.77725 4.78689 4.91136 4.99787 5.18174 5.29372 5.34354 5.41068 5.44416 5.56760 5.60709 5.67916 5.76058 5.79887 5.85054 5.95727 6.02303 6.14243 6.14943 6.25317 6.29045 6.42465 6.72327 6.76026 6.96586 7.00519 7.28475 7.59035 7.78718 7.99463 8.31482 9.10135 9.19159 9.47163 9.79969 10.23901 11.31186 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.003614 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.324841 B = 7746.143525 C = 9038.398495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.559 5.559 5 C -0.264 4.264 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.876 5.876 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.131 3.869 14 C 0.469 3.531 15 O -0.488 6.488 16 N -0.631 5.631 17 C 0.086 3.914 18 C 0.155 3.845 19 C -0.099 4.099 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.086 4.086 23 S -0.127 6.127 24 C -0.143 4.143 25 C -0.099 4.099 26 C -0.070 4.070 27 H 0.183 0.817 28 H 0.097 0.903 29 H 0.034 0.966 30 H 0.252 0.748 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -18.551 -7.309 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.276 5.276 5 C -0.393 4.393 6 H 0.092 0.908 7 C -0.191 4.191 8 N -0.517 5.517 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C -0.001 4.001 14 C 0.254 3.746 15 O -0.358 6.358 16 N -0.370 5.370 17 C -0.058 4.058 18 C 0.032 3.968 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.163 4.163 22 C -0.198 4.198 23 S 0.114 5.886 24 C -0.311 4.311 25 C -0.122 4.122 26 C -0.091 4.091 27 H 0.200 0.800 28 H 0.115 0.885 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.334 -18.022 -5.622 18.882 hybrid contribution 0.300 -0.319 -0.205 0.484 sum -0.033 -18.341 -5.827 19.245 Atomic orbital electron populations 1.23929 0.95092 1.04316 1.07464 1.23917 0.94975 0.96617 0.94174 1.17870 0.83272 0.90754 0.93629 1.44265 1.72782 1.02517 1.08018 1.19181 1.26228 1.08917 0.85009 0.90780 1.24920 0.96118 1.00400 0.97646 1.70203 1.21041 1.22454 1.38040 0.86289 0.79471 0.77949 0.83454 1.20296 1.21489 1.21912 1.21099 0.93134 0.89130 0.96713 1.23455 0.93067 0.79740 0.78288 1.90730 1.39994 1.66995 1.38116 1.48527 1.13365 1.22212 1.52900 1.21636 0.89905 0.98877 0.95368 1.20187 0.89193 0.93123 0.94340 1.20403 0.99021 0.94518 0.96303 1.20867 0.99069 0.93270 0.98131 1.21016 1.03149 0.99968 0.92183 1.21644 1.04130 0.97760 0.96280 1.85508 1.79676 1.08534 1.14835 1.23632 1.04033 0.98131 1.05323 1.20801 1.00259 0.91664 0.99507 1.21257 0.96733 0.99541 0.91533 0.79953 0.88474 0.94809 0.93708 0.90680 0.91494 0.93316 0.91075 0.92259 0.89406 0.90793 0.86124 0.86268 0.87610 0.89905 0.89816 0.85634 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.20 18.79 29.55 0.56 -6.64 16 2 C -0.09 -2.42 10.03 -37.12 -0.37 -2.79 16 3 C 0.27 6.51 5.45 -6.83 -0.04 6.47 16 4 N -0.56 -13.69 2.09 -177.95 -0.37 -14.07 16 5 C -0.26 -7.19 9.66 -15.06 -0.15 -7.33 16 6 H 0.07 2.00 7.90 -52.49 -0.41 1.58 16 7 C 0.01 0.26 4.85 -17.43 -0.08 0.18 16 8 N -0.88 -25.60 9.50 55.49 0.53 -25.07 16 9 Si 0.90 21.91 29.61 -169.99 -5.03 16.88 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 C 0.13 2.58 4.73 -5.19 -0.02 2.56 16 14 C 0.47 9.50 7.65 -10.99 -0.08 9.41 16 15 O -0.49 -12.16 13.53 5.55 0.08 -12.09 16 16 N -0.63 -9.71 2.86 -182.96 -0.52 -10.23 16 17 C 0.09 0.94 10.24 59.85 0.61 1.55 16 18 C 0.15 2.19 5.53 -5.19 -0.03 2.16 16 19 C -0.10 -1.42 5.47 -104.57 -0.57 -1.99 16 20 C -0.09 -1.13 9.69 -39.61 -0.38 -1.51 16 21 C -0.14 -1.68 9.36 -39.36 -0.37 -2.05 16 22 C -0.09 -1.17 6.11 -39.03 -0.24 -1.41 16 23 S -0.13 -1.49 22.56 -107.50 -2.43 -3.91 16 24 C -0.14 -1.08 9.15 101.05 0.92 -0.16 16 25 C -0.10 -1.52 9.79 -39.37 -0.39 -1.91 16 26 C -0.07 -1.16 9.69 -39.62 -0.38 -1.54 16 27 H 0.18 4.00 7.80 -54.10 -0.42 3.58 16 28 H 0.10 2.53 6.41 -51.93 -0.33 2.20 16 29 H 0.03 0.70 7.97 -51.93 -0.41 0.28 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.08 1.37 7.28 -51.93 -0.38 1.00 16 32 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 35 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.09 1.43 7.36 -51.93 -0.38 1.05 16 37 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.12 5.88 -52.49 -0.31 0.82 16 40 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.55 7.75 -51.92 -0.40 0.15 16 42 H 0.08 0.60 7.75 -51.92 -0.40 0.20 16 43 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.14 2.57 7.57 -52.49 -0.40 2.17 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -34.22 382.50 -9.26 -43.48 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.26 Total: 4.25 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.02 Total: -5.00 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.37 Total: -49.37 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.43 Total: -3.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.22 -9.26 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.689 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds