Wall clock time and date at job start Tue Mar 31 2020 16:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47102 * 332.59724 * 3 2 1 5 5 C 1.36938 * 119.99983 * 264.35387 * 4 3 2 6 6 H 1.07999 * 119.99797 * 196.59612 * 5 4 3 7 7 C 1.38809 * 120.00265 * 16.59758 * 5 4 3 8 8 N 1.31621 * 119.99706 * 22.38862 * 7 5 4 9 9 Si 1.86794 * 120.00235 * 202.39194 * 7 5 4 10 10 H 1.48505 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47142 * 119.99717 * 9 7 5 12 12 H 1.48500 * 109.47357 * 239.99826 * 9 7 5 13 13 C 1.46506 * 119.99999 * 84.35287 * 4 3 2 14 14 C 1.50695 * 109.47260 * 270.00031 * 13 4 3 15 15 O 1.21284 * 120.00241 * 359.97438 * 14 13 4 16 16 N 1.34777 * 119.99902 * 180.02562 * 14 13 4 17 17 C 1.46498 * 119.99928 * 359.97438 * 16 14 13 18 18 C 1.46496 * 119.99964 * 180.02562 * 16 14 13 19 19 C 1.50705 * 109.47307 * 269.99945 * 18 16 14 20 20 C 1.38305 * 119.91881 * 269.72691 * 19 18 16 21 21 C 1.38086 * 120.08100 * 179.76286 * 20 19 18 22 22 C 1.38976 * 119.91659 * 0.50721 * 21 20 19 23 23 S 1.76195 * 120.07973 * 179.72396 * 22 21 20 24 24 C 1.81398 * 103.00171 * 0.02562 * 23 22 21 25 25 C 1.38976 * 119.83776 * 359.74733 * 22 21 20 26 26 C 1.38081 * 119.92242 * 359.97438 * 25 22 21 27 27 H 4.40642 * 5.51355 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46558 * 212.59806 * 3 2 1 29 29 H 1.08994 * 109.46990 * 92.59990 * 3 2 1 30 30 H 0.96996 * 119.99707 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46820 * 150.00009 * 13 4 3 32 32 H 1.09001 * 109.46544 * 30.00276 * 13 4 3 33 33 H 1.09002 * 109.47346 * 270.00123 * 17 16 14 34 34 H 1.08998 * 109.47210 * 30.00359 * 17 16 14 35 35 H 1.09003 * 109.46973 * 150.00093 * 17 16 14 36 36 H 1.08998 * 109.47480 * 30.00059 * 18 16 14 37 37 H 1.08999 * 109.47220 * 150.00379 * 18 16 14 38 38 H 1.07995 * 119.95855 * 359.97438 * 20 19 18 39 39 H 1.07991 * 120.03877 * 180.25533 * 21 20 19 40 40 H 1.08999 * 109.47387 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47290 * 300.00685 * 24 23 22 42 42 H 1.09008 * 109.47106 * 59.99625 * 24 23 22 43 43 H 1.08003 * 120.03818 * 179.97438 * 25 22 21 44 44 H 1.08000 * 119.95728 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2253 0.6357 5 6 3.4732 -1.2206 1.9626 6 1 4.0747 -2.0200 2.3694 7 6 3.0428 -0.1883 2.7849 8 7 1.9893 0.5254 2.4485 9 14 3.9589 0.1879 4.3687 10 1 5.0989 -0.7523 4.5165 11 1 4.4686 1.5820 4.3266 12 1 3.0371 0.0326 5.5226 13 6 3.2619 -2.4565 -0.1483 14 6 1.9727 -3.2332 -0.0760 15 8 1.0396 -2.8013 0.5673 16 7 1.8567 -4.4085 -0.7256 17 6 2.9839 -4.9305 -1.5022 18 6 0.6032 -5.1634 -0.6558 19 6 0.6488 -6.1055 0.5195 20 6 1.1376 -7.3890 0.3562 21 6 1.1855 -8.2534 1.4320 22 6 0.7319 -7.8358 2.6775 23 16 0.7843 -8.9377 4.0514 24 6 1.4941 -10.4467 3.3375 25 6 0.2366 -6.5471 2.8365 26 6 0.1971 -5.6863 1.7576 27 1 -1.0498 -0.0002 0.0003 28 1 3.0089 0.8666 0.5537 29 1 3.0093 0.0474 -1.0266 30 1 1.6889 1.2469 3.0229 31 1 4.0739 -3.0617 0.2549 32 1 3.4771 -2.2052 -1.1869 33 1 2.9187 -4.5658 -2.5274 34 1 3.9196 -4.5940 -1.0557 35 1 2.9521 -6.0200 -1.5014 36 1 -0.2310 -4.4722 -0.5352 37 1 0.4716 -5.7349 -1.5746 38 1 1.4854 -7.7144 -0.6130 39 1 1.5711 -9.2541 1.3046 40 1 1.5744 -11.2113 4.1101 41 1 0.8499 -10.8072 2.5356 42 1 2.4844 -10.2284 2.9374 43 1 -0.1171 -6.2193 3.8029 44 1 -0.1881 -4.6849 1.8805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:24 Heat of formation + Delta-G solvation = 72.177522 kcal Electronic energy + Delta-G solvation = -26153.064611 eV Core-core repulsion = 22585.230990 eV Total energy + Delta-G solvation = -3567.833621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89034 -39.78238 -37.55348 -36.22249 -33.50466 -33.30009 -32.66347 -32.15969 -29.83744 -29.17908 -28.00694 -27.79750 -26.32491 -23.82949 -23.61368 -22.47916 -19.99838 -19.33512 -18.75094 -18.33934 -17.58028 -17.26945 -17.05491 -16.54295 -16.22766 -15.95825 -15.67123 -15.37462 -15.22116 -14.79812 -14.67985 -14.67109 -14.29714 -13.91996 -13.66929 -13.60373 -13.37032 -13.33748 -13.18076 -13.07842 -12.85243 -12.75478 -12.51356 -12.32219 -12.21262 -12.05877 -11.90367 -11.21538 -10.93049 -10.73110 -10.61795 -10.41384 -10.16133 -9.99222 -9.40566 -8.90949 -8.40025 -7.79926 -5.21768 0.11058 0.36415 0.53753 1.44919 1.47567 1.47870 1.57018 2.08501 2.25999 2.43737 2.59689 2.70256 2.81405 3.32810 3.75152 3.83612 3.90193 3.93035 4.06400 4.19009 4.26901 4.27781 4.33351 4.40499 4.48516 4.58907 4.62749 4.67242 4.72119 4.79955 4.85863 4.93624 4.93841 5.01884 5.06664 5.21743 5.30632 5.32735 5.61802 5.64563 5.72423 5.82913 5.91070 6.26551 6.68468 7.10306 7.51880 7.64664 7.86866 8.23263 9.21019 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.003614 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.324841 B = 7746.143525 C = 9038.398495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.111 4.111 3 C 0.269 3.731 4 N -0.574 5.574 5 C -0.263 4.263 6 H 0.073 0.927 7 C -0.044 4.044 8 N -0.907 5.907 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.307 1.307 13 C 0.127 3.873 14 C 0.464 3.536 15 O -0.548 6.548 16 N -0.623 5.623 17 C 0.076 3.924 18 C 0.158 3.842 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.089 4.089 23 S -0.166 6.166 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.097 4.097 27 H 0.202 0.798 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -22.432 -9.652 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.113 4.113 3 C 0.144 3.856 4 N -0.292 5.292 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.551 5.551 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.235 1.235 13 C -0.003 4.003 14 C 0.250 3.750 15 O -0.423 6.423 16 N -0.359 5.359 17 C -0.066 4.066 18 C 0.035 3.965 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.201 4.201 23 S 0.076 5.924 24 C -0.299 4.299 25 C -0.146 4.146 26 C -0.117 4.117 27 H 0.219 0.781 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.181 0.819 39 H 0.173 0.827 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.130 0.870 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.941 -21.978 -8.016 23.475 hybrid contribution -0.379 0.656 0.455 0.884 sum 1.562 -21.323 -7.560 22.677 Atomic orbital electron populations 1.24564 0.96085 1.04254 1.07547 1.24499 0.95925 0.96726 0.94191 1.17913 0.82491 0.90072 0.95110 1.44335 1.72921 1.04457 1.07445 1.19427 1.25265 1.08262 0.86365 0.90936 1.25577 0.96994 1.00956 1.00578 1.70375 1.22667 1.23091 1.39004 0.85367 0.78321 0.77966 0.79685 1.18913 1.21144 1.23547 1.21300 0.93197 0.87731 0.98029 1.23259 0.92355 0.81176 0.78178 1.90729 1.41732 1.68932 1.40936 1.48347 1.15030 1.20782 1.51745 1.21998 0.88049 1.00827 0.95722 1.20254 0.87459 0.92596 0.96207 1.20432 0.99673 0.95933 0.95093 1.21255 0.97111 0.91559 0.99966 1.21477 1.01673 1.01448 0.91082 1.21806 1.03394 0.97077 0.97832 1.85691 1.80263 1.11020 1.15471 1.23777 1.04361 0.95461 1.06257 1.20765 1.01957 0.93119 0.98803 1.21050 0.98932 0.98150 0.93607 0.78143 0.90998 0.90984 0.94795 0.89116 0.87933 0.90972 0.90746 0.89199 0.92860 0.86333 0.81851 0.82651 0.85613 0.88295 0.88673 0.87003 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.76 18.79 74.32 1.40 -14.36 16 2 C -0.11 -5.84 10.03 31.12 0.31 -5.52 16 3 C 0.27 13.12 5.45 84.57 0.46 13.58 16 4 N -0.57 -28.18 2.09 -716.92 -1.50 -29.68 16 5 C -0.26 -14.53 9.66 84.03 0.81 -13.72 16 6 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 7 C -0.04 -2.54 4.85 84.86 0.41 -2.13 16 8 N -0.91 -55.23 9.50 21.65 0.21 -55.02 16 9 Si 0.96 46.43 29.61 68.60 2.03 48.46 16 10 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 13 C 0.13 4.83 4.73 85.63 0.41 5.24 16 14 C 0.46 18.67 7.65 87.66 0.67 19.34 16 15 O -0.55 -28.51 13.53 -3.04 -0.04 -28.55 16 16 N -0.62 -17.83 2.86 -851.14 -2.43 -20.26 16 17 C 0.08 1.30 10.24 127.77 1.31 2.61 16 18 C 0.16 4.23 5.53 85.64 0.47 4.71 16 19 C -0.11 -2.99 5.47 -19.83 -0.11 -3.10 16 20 C -0.08 -1.59 9.69 22.25 0.22 -1.37 16 21 C -0.13 -2.71 9.36 22.41 0.21 -2.50 16 22 C -0.09 -2.33 6.11 22.62 0.14 -2.19 16 23 S -0.17 -3.69 22.56 -56.49 -1.27 -4.96 16 24 C -0.13 -1.46 9.15 113.37 1.04 -0.42 16 25 C -0.12 -4.02 9.79 22.41 0.22 -3.80 16 26 C -0.10 -3.41 9.69 22.25 0.22 -3.20 16 27 H 0.20 9.11 7.80 -4.43 -0.03 9.08 16 28 H 0.07 3.86 6.41 -2.39 -0.02 3.84 16 29 H 0.07 2.88 7.97 -2.39 -0.02 2.86 16 30 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.09 3.12 7.28 -2.39 -0.02 3.11 16 32 H 0.10 3.11 7.91 -2.39 -0.02 3.09 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 35 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 36 H 0.05 1.81 7.36 -2.39 -0.02 1.79 16 37 H 0.12 2.10 8.01 -2.39 -0.02 2.08 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.16 2.03 5.88 -2.92 -0.02 2.01 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 0.84 7.75 -2.39 -0.02 0.83 16 42 H 0.09 0.91 7.75 -2.39 -0.02 0.89 16 43 H 0.11 3.75 8.06 -2.91 -0.02 3.72 16 44 H 0.09 4.04 7.57 -2.91 -0.02 4.01 16 Total: -1.00 -80.88 382.50 6.16 -74.72 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.99 Total: 22.12 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 8.18 Total: -6.84 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.72 Total: -104.96 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.04 Total: -28.55 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.27 Total: -4.96 kcal Total: -80.88 6.16 -74.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.901 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds