Wall clock time and date at job start Tue Mar 31 2020 17:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99618 * 2 1 4 4 H 1.48508 * 109.46870 * 239.99805 * 3 2 1 5 5 H 1.48500 * 109.47422 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47326 * 119.99931 * 3 2 1 7 7 C 1.37874 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99389 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00592 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47544 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00281 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99792 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00330 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00211 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46811 * 324.99486 * 14 13 11 16 16 C 1.50698 * 109.47114 * 204.99832 * 14 13 11 17 17 C 1.38250 * 119.94408 * 319.99937 * 16 14 13 18 18 C 1.38197 * 120.11470 * 179.75136 * 17 16 14 19 19 C 1.38711 * 120.06659 * 0.24891 * 18 17 16 20 20 C 1.38973 * 119.81785 * 359.93957 * 19 18 17 21 21 C 1.38204 * 119.94370 * 140.25216 * 16 14 13 22 22 O 1.36105 * 120.78446 * 180.21837 * 20 19 18 23 23 C 1.43183 * 116.69352 * 342.70476 * 22 20 19 24 24 C 1.53478 * 108.23250 * 46.26316 * 23 22 20 25 25 O 1.36107 * 119.39787 * 179.80055 * 19 18 17 26 26 C 1.52997 * 109.47471 * 84.99595 * 14 13 11 27 27 C 1.53009 * 117.49576 * 8.75154 * 26 14 13 28 28 C 1.52998 * 117.49951 * 300.09257 * 26 14 13 29 29 H 0.96997 * 120.00316 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46939 * 59.99915 * 9 7 2 31 31 H 1.09003 * 109.47111 * 300.00230 * 9 7 2 32 32 H 0.96999 * 119.99943 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99545 * 359.97438 * 13 11 10 34 34 H 1.08002 * 119.94561 * 0.03259 * 17 16 14 35 35 H 1.07998 * 119.97290 * 180.26724 * 18 17 16 36 36 H 1.07991 * 119.96550 * 0.03922 * 21 16 14 37 37 H 1.08996 * 109.71545 * 286.57588 * 23 22 20 38 38 H 1.09004 * 109.71088 * 165.93942 * 23 22 20 39 39 H 1.08997 * 109.70826 * 180.57117 * 24 23 22 40 40 H 1.08996 * 109.74284 * 59.96401 * 24 23 22 41 41 H 1.08994 * 115.55028 * 154.41462 * 26 14 13 42 42 H 1.09003 * 117.49677 * 359.97438 * 27 26 14 43 43 H 1.08988 * 117.49627 * 145.02174 * 27 26 14 44 44 H 1.08995 * 117.49579 * 214.97886 * 28 26 14 45 45 H 1.08998 * 117.49815 * 359.96748 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 1.7540 -4.8833 0.0033 12 8 0.5586 -5.1055 0.0035 13 7 2.6298 -5.9077 0.0037 14 6 2.1416 -7.2889 0.0049 15 1 1.2271 -7.3504 0.5949 16 6 3.1885 -8.1912 0.6056 17 6 4.5242 -7.9900 0.3112 18 6 5.4876 -8.8122 0.8641 19 6 5.1163 -9.8451 1.7122 20 6 3.7733 -10.0498 2.0050 21 6 2.8113 -9.2218 1.4457 22 8 3.3872 -11.0545 2.8381 23 6 4.3434 -12.0924 3.0803 24 6 5.6982 -11.4367 3.3803 25 8 6.0761 -10.6491 2.2459 26 6 1.8524 -7.7290 -1.4316 27 6 2.2973 -6.7957 -2.5594 28 6 0.8111 -6.9310 -2.2188 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5575 -0.8880 31 1 0.6248 -2.5563 0.8920 32 1 3.1568 -3.4354 0.0022 33 1 3.5835 -5.7304 0.0032 34 1 4.8157 -7.1860 -0.3485 35 1 6.5307 -8.6502 0.6360 36 1 1.7669 -9.3798 1.6703 37 1 4.4292 -12.7265 2.1979 38 1 4.0276 -12.6912 3.9347 39 1 6.4481 -12.2074 3.5588 40 1 5.6115 -10.7977 4.2590 41 1 1.9081 -8.8020 -1.6148 42 1 2.7957 -5.8680 -2.2779 43 1 2.6452 -7.2547 -3.4847 44 1 0.1819 -7.4790 -2.9201 45 1 0.3317 -6.0928 -1.7131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:53 Heat of formation + Delta-G solvation = -45.310219 kcal Electronic energy + Delta-G solvation = -28144.703836 eV Core-core repulsion = 24129.022693 eV Total energy + Delta-G solvation = -4015.681143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54390 -40.01475 -38.19725 -37.53130 -36.69527 -34.08825 -33.67229 -32.29761 -31.39803 -31.11828 -29.12574 -27.27975 -26.21435 -24.56855 -23.11732 -22.57532 -21.98188 -21.15231 -20.41424 -19.60456 -18.96544 -18.06926 -17.53235 -17.51175 -16.11892 -16.06738 -15.69058 -15.59929 -15.32883 -14.76200 -14.70206 -14.55510 -14.24741 -14.14088 -14.08883 -13.67327 -13.29492 -13.07949 -13.01175 -12.13931 -12.01462 -11.91848 -11.89378 -11.78438 -11.42698 -11.29445 -11.10877 -10.94576 -10.84366 -10.77603 -10.27882 -10.11930 -9.78137 -9.36327 -9.35392 -8.85655 -8.69453 -8.62944 -8.25174 -7.74990 -6.13069 -4.19534 1.02341 1.08949 2.69127 2.88407 3.26909 3.27439 3.32642 3.35074 3.54109 3.85293 3.93560 4.09353 4.34266 4.35184 4.40468 4.49209 4.55284 4.79898 4.99636 5.02605 5.04109 5.08251 5.17637 5.19693 5.23025 5.25263 5.39328 5.56046 5.60872 5.83003 5.89724 5.93692 5.95080 6.15513 6.28001 6.36829 6.43522 6.59635 6.74460 6.91441 7.12625 7.14141 7.54168 7.57265 7.59777 7.92900 8.06623 8.78434 8.95795 9.35196 9.50196 10.97055 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002451 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.291935 B =11419.145375 C =12153.145664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.594 6.594 13 N -0.750 5.750 14 C 0.240 3.760 15 H 0.100 0.900 16 C -0.074 4.074 17 C -0.102 4.102 18 C -0.110 4.110 19 C 0.046 3.954 20 C 0.052 3.948 21 C -0.100 4.100 22 O -0.307 6.307 23 C 0.021 3.979 24 C 0.020 3.980 25 O -0.309 6.309 26 C -0.168 4.168 27 C -0.173 4.173 28 C -0.180 4.180 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.386 0.614 33 H 0.391 0.609 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.430 -24.802 3.011 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.380 5.380 11 C 0.396 3.604 12 O -0.473 6.473 13 N -0.407 5.407 14 C 0.134 3.866 15 H 0.118 0.882 16 C -0.075 4.075 17 C -0.121 4.121 18 C -0.128 4.128 19 C 0.001 3.999 20 C 0.007 3.993 21 C -0.119 4.119 22 O -0.221 6.221 23 C -0.055 4.055 24 C -0.055 4.055 25 O -0.224 6.224 26 C -0.187 4.187 27 C -0.211 4.211 28 C -0.217 4.217 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.218 0.782 33 H 0.225 0.775 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.125 -24.856 3.061 27.404 hybrid contribution 1.477 0.770 0.131 1.671 sum 12.602 -24.086 3.193 27.371 Atomic orbital electron populations 1.69966 1.06058 1.27346 1.48895 1.24935 0.94906 0.99348 0.94799 0.86487 0.79410 0.82414 0.78640 1.20108 1.21103 1.20123 1.21188 0.93210 0.90488 1.53163 0.92053 1.18963 0.87722 0.80998 0.97588 1.45734 1.10792 1.04434 1.77088 1.16098 0.85249 0.80966 0.78122 1.90807 1.14127 1.84021 1.58374 1.45300 1.08882 1.04519 1.81994 1.18914 0.94927 0.78828 0.93922 0.88217 1.19653 0.94464 0.96249 0.97159 1.20720 0.91676 0.99546 1.00154 1.20398 1.00620 0.93248 0.98571 1.18896 0.86455 0.94667 0.99861 1.18790 0.91592 0.92331 0.96611 1.20256 0.99097 0.95408 0.97181 1.86330 1.41002 1.32335 1.62464 1.23621 0.89033 0.89238 1.03598 1.23622 0.97973 0.95808 0.88140 1.86301 1.35924 1.54935 1.45191 1.22677 1.06676 0.97283 0.92105 1.22890 0.98818 1.01368 0.97996 1.23424 0.91819 1.04027 1.02423 0.92431 0.95696 0.95774 0.78225 0.77458 0.84909 0.84688 0.84401 0.90511 0.86099 0.86153 0.90436 0.87791 0.88579 0.89705 0.89796 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.10 5.43 -5.20 -0.03 7.07 16 10 N -0.73 -15.26 5.55 -66.42 -0.37 -15.63 16 11 C 0.70 13.74 7.40 -86.92 -0.64 13.10 16 12 O -0.59 -13.95 13.37 5.29 0.07 -13.88 16 13 N -0.75 -10.94 3.57 -59.82 -0.21 -11.15 16 14 C 0.24 3.22 2.63 -69.09 -0.18 3.04 16 15 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 16 C -0.07 -0.86 4.93 -104.63 -0.52 -1.37 16 17 C -0.10 -1.05 9.05 -39.59 -0.36 -1.41 16 18 C -0.11 -1.12 9.96 -39.42 -0.39 -1.51 16 19 C 0.05 0.51 6.49 -39.13 -0.25 0.26 16 20 C 0.05 0.59 6.49 -39.14 -0.25 0.34 16 21 C -0.10 -1.17 9.58 -39.42 -0.38 -1.54 16 22 O -0.31 -3.23 10.42 -32.86 -0.34 -3.58 16 23 C 0.02 0.13 7.26 37.41 0.27 0.40 16 24 C 0.02 0.13 7.26 37.41 0.27 0.40 16 25 O -0.31 -3.09 10.42 -32.86 -0.34 -3.43 16 26 C -0.17 -2.17 5.69 -90.62 -0.52 -2.68 16 27 C -0.17 -2.31 9.74 -26.69 -0.26 -2.57 16 28 C -0.18 -2.73 9.82 -26.69 -0.26 -2.99 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 33 H 0.39 4.70 6.88 -40.82 -0.28 4.42 16 34 H 0.13 1.16 6.91 -52.49 -0.36 0.79 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.50 8.03 -52.49 -0.42 1.08 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.10 1.38 6.67 -51.93 -0.35 1.03 16 43 H 0.08 0.99 8.14 -51.94 -0.42 0.57 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.13 2.43 5.01 -51.93 -0.26 2.17 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -33.41 370.43 -9.97 -43.39 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.16 Total: 10.99 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.92 Total: -2.79 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.15 Total: -52.16 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.61 Total: -20.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.41 -9.97 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.923 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds