Wall clock time and date at job start Tue Mar 31 2020 17:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48505 * 109.47086 * 239.99878 * 3 2 1 5 5 H 1.48498 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 120.00140 * 3 2 1 7 7 C 1.37884 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99377 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47325 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47110 * 180.02562 * 11 10 9 13 13 C 1.34786 * 119.99804 * 180.02562 * 12 11 10 14 14 O 1.21346 * 119.99708 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99911 * 179.97438 * 13 12 11 16 16 O 1.21347 * 119.99950 * 359.97438 * 15 13 12 17 17 N 1.34776 * 119.99915 * 180.02562 * 15 13 12 18 18 C 1.46500 * 120.00144 * 180.02562 * 17 15 13 19 19 C 1.50694 * 109.47141 * 179.97438 * 18 17 15 20 20 C 1.38291 * 120.11946 * 89.99957 * 19 18 17 21 21 C 1.37929 * 120.35446 * 180.17130 * 20 19 18 22 22 C 1.39289 * 120.24278 * 0.06555 * 21 20 19 23 23 C 1.38981 * 118.85498 * 359.58943 * 22 21 20 24 24 C 1.37660 * 120.77699 * 0.54611 * 23 22 21 25 25 C 1.51649 * 106.97907 * 180.57567 * 23 22 21 26 26 C 1.54713 * 101.93881 * 15.71381 * 25 23 22 27 27 O 1.36126 * 129.87617 * 179.56466 * 22 21 20 28 28 H 0.97005 * 119.99513 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00256 * 9 7 2 30 30 H 1.09002 * 109.47009 * 300.00179 * 9 7 2 31 31 H 1.09001 * 109.47102 * 60.00204 * 10 9 7 32 32 H 1.09002 * 109.47291 * 299.99903 * 10 9 7 33 33 H 1.09003 * 109.46834 * 59.99540 * 11 10 9 34 34 H 1.09002 * 109.46911 * 300.00201 * 11 10 9 35 35 H 0.96998 * 120.00178 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99702 * 359.97438 * 17 15 13 37 37 H 1.09002 * 109.46903 * 59.99300 * 18 17 15 38 38 H 1.09006 * 109.46740 * 299.99901 * 18 17 15 39 39 H 1.08007 * 119.81963 * 0.19443 * 20 19 18 40 40 H 1.07996 * 119.87833 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.98294 * 179.61345 * 24 23 22 42 42 H 1.09002 * 110.94508 * 257.54041 * 25 23 22 43 43 H 1.08997 * 110.93949 * 133.88365 * 25 23 22 44 44 H 1.09003 * 110.74698 * 92.94680 * 26 25 23 45 45 H 1.09001 * 110.74689 * 216.11069 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4321 -6.1007 0.0007 13 6 1.9828 -7.3714 0.0008 14 8 0.7897 -7.5930 0.0000 15 6 2.9539 -8.5074 0.0009 16 8 4.1469 -8.2857 0.0004 17 7 2.5046 -9.7780 0.0005 18 6 3.4565 -10.8916 0.0011 19 6 2.7030 -12.1966 0.0011 20 6 2.3564 -12.7978 -1.1951 21 6 1.6636 -13.9905 -1.2008 22 6 1.3056 -14.5995 -0.0003 23 6 1.6660 -13.9891 1.1951 24 6 2.3550 -12.7974 1.1978 25 6 1.1605 -14.8770 2.3157 26 6 0.8654 -16.1991 1.5682 27 8 0.6235 -15.7564 0.2219 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8718 -3.6045 0.8895 32 1 2.8718 -3.6045 -0.8905 33 1 0.8531 -5.0451 -0.8896 34 1 0.8538 -5.0446 0.8903 35 1 3.3858 -5.9235 0.0011 36 1 1.5508 -9.9552 0.0005 37 1 4.0826 -10.8339 0.8915 38 1 4.0838 -10.8338 -0.8885 39 1 2.6301 -12.3311 -2.1299 40 1 1.3973 -14.4535 -2.1394 41 1 2.6232 -12.3311 2.1343 42 1 0.2517 -14.4679 2.7573 43 1 1.9291 -15.0219 3.0748 44 1 1.7274 -16.8651 1.6068 45 1 -0.0171 -16.6876 1.9815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550848615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:45 Heat of formation + Delta-G solvation = -90.667194 kcal Electronic energy + Delta-G solvation = -26184.098061 eV Core-core repulsion = 22166.450092 eV Total energy + Delta-G solvation = -4017.647969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60764 -40.60838 -38.80159 -38.07973 -35.80521 -34.92119 -33.32087 -33.20560 -31.24505 -31.23649 -29.77064 -27.55642 -26.58942 -24.35464 -23.82122 -22.55989 -22.37269 -21.45673 -20.77742 -20.16170 -18.48024 -17.90008 -17.24827 -16.95013 -16.65551 -16.35593 -16.09028 -15.79573 -15.39696 -14.96355 -14.70788 -14.59766 -14.44434 -14.07485 -13.74167 -13.72617 -13.60101 -13.48456 -13.03819 -12.74590 -12.32143 -12.30117 -12.10008 -11.89453 -11.79375 -11.72137 -11.38291 -11.26675 -10.89118 -10.75815 -10.63207 -9.89787 -9.81384 -9.52288 -9.41051 -9.37382 -9.14651 -8.97756 -8.60658 -8.37438 -6.02426 -4.05513 0.68252 0.82427 1.41770 2.37281 2.73151 3.17574 3.22616 3.32694 3.37288 3.39540 3.76175 3.84941 3.98957 4.25327 4.35164 4.43993 4.44623 4.52608 4.64830 4.79783 4.83099 5.00320 5.14283 5.18149 5.20759 5.27894 5.33455 5.55165 5.59561 5.69322 5.69884 5.86607 5.92643 6.03023 6.08219 6.08434 6.27322 6.54178 6.65105 6.69385 6.91575 6.95272 7.40118 7.61596 7.71347 7.73490 7.95737 8.05361 8.37054 9.00724 9.58755 11.08748 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033492 B = 0.001495 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.819776 B =18729.306537 C =19012.522846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.701 5.701 18 C 0.166 3.834 19 C -0.140 4.140 20 C -0.061 4.061 21 C -0.139 4.139 22 C 0.114 3.886 23 C -0.178 4.178 24 C -0.047 4.047 25 C -0.111 4.111 26 C 0.051 3.949 27 O -0.304 6.304 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -34.647 2.316 35.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.289 3.711 16 O -0.396 6.396 17 N -0.355 5.355 18 C 0.043 3.957 19 C -0.140 4.140 20 C -0.079 4.079 21 C -0.158 4.158 22 C 0.069 3.931 23 C -0.179 4.179 24 C -0.065 4.065 25 C -0.148 4.148 26 C -0.024 4.024 27 O -0.218 6.218 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.251 0.749 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.462 -34.639 2.179 34.993 hybrid contribution 0.427 0.896 0.199 1.012 sum 4.890 -33.744 2.378 34.179 Atomic orbital electron populations 1.69958 1.06055 1.26813 1.50448 1.25025 0.94863 0.99302 0.95213 0.86630 0.79550 0.83021 0.78623 1.20223 1.21276 1.20236 1.21168 0.93025 0.90906 1.51129 0.92617 1.19029 0.93801 0.90773 0.97718 1.21930 0.99879 0.92954 1.01315 1.21847 0.91743 0.84720 1.02541 1.46071 1.12225 1.04979 1.71031 1.20000 0.88451 0.84508 0.79091 1.90765 1.16006 1.84693 1.48802 1.20364 0.88792 0.84333 0.77564 1.90765 1.16208 1.84765 1.47848 1.45880 1.11695 1.04458 1.73487 1.20191 0.90447 0.81252 1.03771 1.19653 1.03810 0.97406 0.93179 1.20859 0.95431 0.93575 0.98063 1.20272 1.02508 0.97199 0.95824 1.19691 0.91932 0.86885 0.94609 1.20753 1.04469 0.98031 0.94628 1.20215 0.95309 0.92906 0.98086 1.21814 1.02523 0.93404 0.97064 1.23863 1.02856 0.96363 0.79304 1.86840 1.64802 1.37462 1.32712 0.92874 0.96184 0.96202 0.92429 0.92411 0.91076 0.91100 0.75303 0.74907 0.90031 0.89874 0.84616 0.85035 0.85348 0.88891 0.88853 0.90381 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.69 -10.30 5.55 -60.73 -0.34 -10.63 16 13 C 0.50 7.40 7.89 -11.58 -0.09 7.31 16 14 O -0.53 -8.92 16.48 5.50 0.09 -8.82 16 15 C 0.51 6.50 7.89 -11.59 -0.09 6.41 16 16 O -0.52 -7.55 16.48 5.50 0.09 -7.45 16 17 N -0.70 -6.91 5.54 -61.91 -0.34 -7.26 16 18 C 0.17 1.30 5.81 -5.20 -0.03 1.27 16 19 C -0.14 -1.00 5.25 -104.56 -0.55 -1.55 16 20 C -0.06 -0.42 9.68 -39.68 -0.38 -0.80 16 21 C -0.14 -1.05 10.06 -39.30 -0.40 -1.44 16 22 C 0.11 0.96 7.04 -38.92 -0.27 0.69 16 23 C -0.18 -1.31 6.27 -104.09 -0.65 -1.97 16 24 C -0.05 -0.33 9.69 -39.75 -0.39 -0.72 16 25 C -0.11 -0.54 7.11 -26.51 -0.19 -0.73 16 26 C 0.05 0.24 8.01 38.06 0.30 0.54 16 27 O -0.30 -2.55 11.10 -20.14 -0.22 -2.77 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.41 5.57 7.94 -40.82 -0.32 5.24 16 36 H 0.41 3.93 7.94 -40.82 -0.32 3.61 16 37 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -33.41 388.19 -9.13 -42.55 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.53 Total: 2.47 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.45 Total: -4.48 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.06 Total: -43.78 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.41 -9.13 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550848615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.122 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds