Wall clock time and date at job start Tue Mar 31 2020 16:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47606 * 270.00178 * 3 2 1 5 5 H 1.48495 * 109.47568 * 30.00676 * 3 2 1 6 6 H 1.48505 * 109.47011 * 150.00513 * 3 2 1 7 7 C 1.37873 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 172.92249 * 7 2 1 9 9 C 1.50706 * 119.99987 * 352.92597 * 7 2 1 10 10 C 1.53001 * 115.55165 * 84.53316 * 9 7 2 11 11 N 1.46497 * 109.47200 * 39.67696 * 10 9 7 12 12 C 1.34780 * 120.00036 * 181.16833 * 11 10 9 13 13 O 1.21277 * 119.99645 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.46496 * 109.46835 * 179.97438 * 14 12 11 16 16 C 1.34698 * 123.07062 * 89.99861 * 15 14 12 17 17 O 1.21226 * 126.39319 * 11.91885 * 16 15 14 18 18 C 1.53786 * 107.21634 * 191.89930 * 16 15 14 19 19 H 1.08997 * 113.73378 * 212.28860 * 18 16 15 20 20 C 1.53089 * 104.79087 * 87.26545 * 18 16 15 21 21 C 1.48936 * 113.36514 * 214.76730 * 20 18 16 22 22 C 1.28896 * 124.82051 * 17.40721 * 21 20 18 23 23 C 1.49610 * 123.47810 * 357.81206 * 22 21 20 24 24 C 1.49324 * 113.58252 * 11.11293 * 23 22 21 25 25 H 1.09007 * 107.41316 * 205.19737 * 24 23 22 26 26 C 1.34536 * 123.24999 * 270.69030 * 15 14 12 27 27 O 1.21223 * 126.52138 * 9.64609 * 26 15 14 28 28 C 1.52996 * 117.51570 * 230.22985 * 9 7 2 29 29 C 1.52995 * 60.00054 * 107.48092 * 28 9 7 30 30 H 0.96998 * 119.99698 * 5.02647 * 1 2 3 31 31 H 1.09006 * 109.46337 * 279.67995 * 10 9 7 32 32 H 1.08996 * 109.47393 * 159.68121 * 10 9 7 33 33 H 0.96996 * 119.99988 * 1.16395 * 11 10 9 34 34 H 1.09000 * 109.47107 * 59.99176 * 14 12 11 35 35 H 1.09000 * 109.46565 * 299.99322 * 14 12 11 36 36 H 1.08999 * 108.69882 * 335.76667 * 20 18 16 37 37 H 1.09000 * 108.70399 * 93.88643 * 20 18 16 38 38 H 1.08002 * 117.55651 * 197.49286 * 21 20 18 39 39 H 1.08000 * 118.16928 * 177.77225 * 22 21 20 40 40 H 1.09005 * 108.63826 * 250.09600 * 23 22 21 41 41 H 1.08998 * 108.63873 * 132.13440 * 23 22 21 42 42 H 1.08996 * 117.50218 * 214.96898 * 28 9 7 43 43 H 1.09000 * 117.50052 * 359.97438 * 28 9 7 44 44 H 1.08999 * 117.50034 * 252.51179 * 29 28 9 45 45 H 1.08997 * 117.51976 * 107.47733 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1158 9 6 1.2596 -2.4943 0.1596 10 6 0.6734 -3.0816 -1.1258 11 7 1.6223 -2.8933 -2.2259 12 6 1.3073 -3.3139 -3.4670 13 8 0.2385 -3.8487 -3.6730 14 6 2.2837 -3.1208 -4.5986 15 7 1.7109 -3.6586 -5.8350 16 6 0.9639 -2.9223 -6.6801 17 8 0.8321 -1.7174 -6.6602 18 6 0.3098 -3.8954 -7.6752 19 1 0.1636 -3.4736 -8.6696 20 6 -0.9867 -4.3394 -6.9929 21 6 -1.3511 -5.7545 -7.2808 22 6 -0.5410 -6.6433 -7.7447 23 6 0.8823 -6.3552 -8.1045 24 6 1.3580 -5.0193 -7.6368 25 1 2.1749 -4.7162 -8.2919 26 6 1.8693 -4.9359 -6.2267 27 8 2.3419 -5.8386 -5.5700 28 6 1.7703 -3.4760 1.2161 29 6 0.4721 -2.7023 1.4548 30 1 -0.4849 0.8368 -0.0736 31 1 -0.2626 -2.5754 -1.3626 32 1 0.4855 -4.1461 -0.9862 33 1 2.4773 -2.4659 -2.0610 34 1 3.2122 -3.6444 -4.3707 35 1 2.4878 -2.0575 -4.7247 36 1 -0.8731 -4.2199 -5.9154 37 1 -1.7982 -3.6954 -7.3317 38 1 -2.3697 -6.0573 -7.0878 39 1 -0.9106 -7.6491 -7.8795 40 1 0.9835 -6.4010 -9.1889 41 1 1.5158 -7.1247 -7.6635 42 1 1.6886 -4.5403 0.9955 43 1 2.6455 -3.1818 1.7953 44 1 0.4931 -1.8990 2.1911 45 1 -0.4639 -3.2572 1.3910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556829596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:26 Heat of formation + Delta-G solvation = -72.779797 kcal Electronic energy + Delta-G solvation = -29202.484835 eV Core-core repulsion = 25185.612522 eV Total energy + Delta-G solvation = -4016.872313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.50849 -40.62203 -39.75418 -38.66319 -38.37203 -36.76512 -35.03721 -34.03707 -33.32977 -32.25595 -29.93359 -27.81530 -26.94514 -26.10505 -24.77309 -23.00070 -22.98266 -21.87096 -21.39596 -20.54510 -19.18930 -18.66221 -18.39332 -17.93117 -17.44948 -17.11582 -16.84446 -16.66059 -16.46989 -16.27800 -15.88634 -15.48076 -15.33846 -15.26736 -14.82523 -14.47143 -14.39395 -14.24966 -14.11899 -13.71609 -13.53686 -13.45792 -13.24621 -12.99424 -12.93102 -12.85617 -12.35844 -12.31793 -12.05859 -11.72360 -11.57757 -11.50418 -11.19862 -11.03163 -10.90031 -10.66446 -10.48098 -10.18391 -9.88770 -9.79892 -8.13122 -6.27457 0.42277 1.13525 1.41036 1.42542 1.44846 1.52565 1.53930 1.59927 2.34946 2.41977 2.77754 3.08297 3.15659 3.28403 3.41706 3.66274 3.76260 3.92049 4.02075 4.09190 4.15701 4.20490 4.22381 4.23876 4.38753 4.47196 4.52466 4.63602 4.67063 4.75477 4.82253 4.95963 4.97587 5.00206 5.05584 5.19049 5.21677 5.40774 5.57303 5.62696 5.63364 5.70838 5.73621 6.03498 6.18217 6.33197 6.56977 6.69627 6.81607 7.23900 7.43499 8.94278 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.003303 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.176498 B = 8474.635206 C = 9085.128304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.005 3.995 10 C 0.180 3.820 11 N -0.686 5.686 12 C 0.485 3.515 13 O -0.587 6.587 14 C 0.080 3.920 15 N -0.571 5.571 16 C 0.523 3.477 17 O -0.507 6.507 18 C -0.081 4.081 19 H 0.175 0.825 20 C -0.094 4.094 21 C -0.166 4.166 22 C -0.149 4.149 23 C -0.073 4.073 24 C -0.115 4.115 25 H 0.157 0.843 26 C 0.536 3.464 27 O -0.502 6.502 28 C -0.179 4.179 29 C -0.162 4.162 30 H 0.258 0.742 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.414 0.586 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -10.909 -19.802 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.087 0.913 9 C 0.004 3.996 10 C 0.056 3.944 11 N -0.336 5.336 12 C 0.270 3.730 13 O -0.469 6.469 14 C -0.045 4.045 15 N -0.313 5.313 16 C 0.314 3.686 17 O -0.379 6.379 18 C -0.102 4.102 19 H 0.192 0.808 20 C -0.132 4.132 21 C -0.184 4.184 22 C -0.167 4.167 23 C -0.109 4.109 24 C -0.136 4.136 25 H 0.174 0.826 26 C 0.327 3.673 27 O -0.374 6.374 28 C -0.216 4.216 29 C -0.200 4.200 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.251 0.749 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.606 -10.970 -19.446 22.616 hybrid contribution 0.120 1.555 1.181 1.957 sum 3.726 -9.415 -18.265 20.883 Atomic orbital electron populations 1.70118 1.07483 1.27335 1.49263 1.25692 0.95298 1.02043 0.94052 0.85706 0.79001 0.79714 0.78160 1.20276 1.21899 1.18566 1.20592 0.93336 0.89165 1.51339 0.91269 1.19104 0.99405 0.94732 0.86325 1.20527 0.90906 0.96208 0.86784 1.45795 1.21651 1.58955 1.07222 1.21335 0.88254 0.78409 0.84976 1.90619 1.26256 1.45780 1.84232 1.21659 0.96812 1.04317 0.81733 1.46943 1.49222 1.13720 1.21444 1.22465 0.75940 0.87842 0.82330 1.90755 1.59849 1.14554 1.72732 1.22823 0.94456 0.92290 1.00625 0.80797 1.20163 0.96402 0.96910 0.99692 1.21482 1.00792 0.94056 1.02065 1.22031 0.95454 0.99657 0.99517 1.19484 0.94148 0.93192 1.04126 1.21192 1.00589 0.99160 0.92614 0.82563 1.21268 0.75801 0.79923 0.90274 1.90730 1.43448 1.41118 1.62115 1.23080 0.97297 0.96191 1.05071 1.22426 0.93912 1.01487 1.02160 0.93291 0.95542 0.94309 0.74862 0.83710 0.84721 0.93258 0.88826 0.87051 0.85316 0.85051 0.89425 0.89508 0.89425 0.91691 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.10 12.97 21.45 0.28 -50.82 16 2 C 0.03 1.60 5.39 84.65 0.46 2.06 16 3 Si 0.95 41.49 29.55 68.60 2.03 43.52 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.51 -25.20 7.44 25.60 0.19 -25.01 16 8 H 0.07 3.27 7.82 -2.91 -0.02 3.25 16 9 C 0.01 0.24 1.70 -52.93 -0.09 0.15 16 10 C 0.18 8.44 5.75 86.38 0.50 8.94 16 11 N -0.69 -28.05 5.33 -463.06 -2.47 -30.51 16 12 C 0.48 19.22 7.90 87.66 0.69 19.91 16 13 O -0.59 -27.40 15.64 -3.02 -0.05 -27.45 16 14 C 0.08 2.34 6.14 85.63 0.53 2.87 16 15 N -0.57 -15.86 2.02 -756.79 -1.53 -17.39 16 16 C 0.52 14.14 6.72 88.68 0.60 14.74 16 17 O -0.51 -17.18 17.58 -2.86 -0.05 -17.23 16 18 C -0.08 -1.41 4.07 -10.25 -0.04 -1.45 16 19 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 20 C -0.09 -2.11 5.16 29.33 0.15 -1.96 16 21 C -0.17 -3.14 9.75 27.20 0.27 -2.88 16 22 C -0.15 -2.23 9.88 27.41 0.27 -1.96 16 23 C -0.07 -0.84 5.66 28.34 0.16 -0.68 16 24 C -0.11 -1.72 2.42 -12.62 -0.03 -1.75 16 25 H 0.16 1.13 8.12 -2.38 -0.02 1.11 16 26 C 0.54 13.69 7.36 87.54 0.64 14.33 16 27 O -0.50 -15.97 17.38 -2.85 -0.05 -16.02 16 28 C -0.18 -7.27 9.88 30.59 0.30 -6.97 16 29 C -0.16 -7.45 9.51 30.59 0.29 -7.16 16 30 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 31 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.77 7.95 -2.39 -0.02 1.75 16 33 H 0.41 15.40 7.46 -92.71 -0.69 14.71 16 34 H 0.15 3.41 8.02 -2.39 -0.02 3.40 16 35 H 0.13 3.63 7.83 -2.39 -0.02 3.61 16 36 H 0.05 1.60 6.61 -2.39 -0.02 1.59 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.13 0.52 8.14 -2.38 -0.02 0.51 16 41 H 0.09 1.16 7.81 -2.39 -0.02 1.14 16 42 H 0.09 3.17 8.08 -2.39 -0.02 3.15 16 43 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -74.33 377.64 3.37 -70.96 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.32 Total: 31.76 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.88 Total: 13.18 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -3.72 Total: -98.72 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -0.15 Total: -60.70 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -74.33 3.37 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556829596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.816 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds