Wall clock time and date at job start Tue Mar 31 2020 17:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47365 * 264.83716 * 3 2 1 5 5 H 1.48502 * 109.47201 * 24.83939 * 3 2 1 6 6 H 1.48508 * 109.46802 * 144.83542 * 3 2 1 7 7 C 1.37876 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99824 * 3.38728 * 7 2 1 9 9 C 1.50700 * 120.00187 * 183.38857 * 7 2 1 10 10 O 1.42898 * 110.63982 * 61.91815 * 9 7 2 11 11 C 1.55162 * 110.87159 * 298.67168 * 9 7 2 12 12 C 1.55129 * 101.48587 * 205.89598 * 11 9 7 13 13 N 1.47429 * 104.72195 * 37.29621 * 12 11 9 14 14 C 1.34775 * 125.64951 * 155.81375 * 13 12 11 15 15 O 1.21590 * 120.00081 * 179.69084 * 14 13 12 16 16 N 1.34773 * 120.00143 * 359.69511 * 14 13 12 17 17 C 1.46496 * 120.00310 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47407 * 180.02562 * 17 16 14 19 19 C 1.38269 * 119.97767 * 269.97817 * 18 17 16 20 20 C 1.38287 * 120.04302 * 180.02562 * 19 18 17 21 21 C 1.37966 * 119.92198 * 359.97438 * 20 19 18 22 22 C 1.38600 * 120.03617 * 0.02562 * 21 20 19 23 23 C 1.37965 * 120.04198 * 359.97438 * 22 21 20 24 24 C 1.51085 * 107.27758 * 180.23321 * 22 21 20 25 25 O 1.44122 * 105.86145 * 341.93376 * 24 22 21 26 26 C 1.43949 * 104.85844 * 28.78973 * 25 24 22 27 27 C 1.47025 * 108.70173 * 335.55029 * 13 12 11 28 28 H 0.97004 * 119.99562 * 0.02562 * 1 2 3 29 29 H 0.96695 * 114.00285 * 61.69079 * 10 9 7 30 30 H 1.08999 * 110.99843 * 324.13659 * 11 9 7 31 31 H 1.08996 * 111.00236 * 87.98383 * 11 9 7 32 32 H 1.08991 * 110.49845 * 278.45705 * 12 11 9 33 33 H 1.08994 * 110.34166 * 156.05561 * 12 11 9 34 34 H 0.97005 * 119.99726 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.47168 * 59.99626 * 17 16 14 36 36 H 1.09007 * 109.47055 * 299.99627 * 17 16 14 37 37 H 1.08001 * 119.97652 * 359.97438 * 19 18 17 38 38 H 1.08004 * 120.04526 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.04532 * 179.97438 * 23 22 21 40 40 H 1.09000 * 110.15563 * 101.14393 * 24 22 21 41 41 H 1.09000 * 110.15167 * 222.90540 * 24 22 21 42 42 H 1.08995 * 110.15445 * 212.21947 * 26 25 24 43 43 H 1.09001 * 110.14925 * 90.46956 * 26 25 24 44 44 H 1.09002 * 109.88306 * 120.70599 * 27 13 12 45 45 H 1.08999 * 109.88598 * 241.71138 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6058 1.9835 -1.3944 5 1 1.3963 2.6817 0.5881 6 1 3.4879 1.4740 0.8064 7 6 2.0045 -1.1940 -0.0005 8 1 1.4659 -2.1285 -0.0562 9 6 3.5095 -1.1953 0.0766 10 8 3.9517 -0.6019 1.2990 11 6 4.1262 -0.4623 -1.1440 12 6 5.5202 -1.1366 -1.2374 13 7 5.2773 -2.5486 -0.8898 14 6 6.0451 -3.5922 -1.2611 15 8 5.7509 -4.7186 -0.9103 16 7 7.1390 -3.3873 -2.0212 17 6 7.9739 -4.5215 -2.4244 18 6 9.1247 -4.0258 -3.2616 19 6 8.9909 -3.9342 -4.6347 20 6 10.0462 -3.4800 -5.4044 21 6 11.2326 -3.1178 -4.8004 22 6 11.3667 -3.2096 -3.4240 23 6 10.3138 -3.6628 -2.6561 24 6 12.7604 -2.7411 -3.0766 25 8 13.5140 -2.8028 -4.3036 26 6 12.5417 -2.5958 -5.3447 27 6 4.0624 -2.6290 -0.0657 28 1 -0.4850 0.8401 -0.0004 29 1 3.6570 -1.0695 2.0924 30 1 3.5400 -0.6427 -2.0451 31 1 4.2230 0.6059 -0.9502 32 1 6.2113 -0.6844 -0.5262 33 1 5.9121 -1.0576 -2.2513 34 1 7.3736 -2.4887 -2.3013 35 1 7.3767 -5.2236 -3.0062 36 1 8.3603 -5.0220 -1.5364 37 1 8.0619 -4.2184 -5.1066 38 1 9.9419 -3.4088 -6.4770 39 1 10.4184 -3.7347 -1.5836 40 1 12.7304 -1.7176 -2.7030 41 1 13.2035 -3.4011 -2.3308 42 1 12.8248 -3.1512 -6.2388 43 1 12.4565 -1.5334 -5.5731 44 1 3.3240 -3.2642 -0.5549 45 1 4.3067 -3.0338 0.9164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591989981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:02 Heat of formation + Delta-G solvation = -95.667764 kcal Electronic energy + Delta-G solvation = -27979.420607 eV Core-core repulsion = 23961.555797 eV Total energy + Delta-G solvation = -4017.864810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75459 -41.30576 -39.48771 -38.62212 -36.16363 -35.82655 -34.50347 -32.82665 -32.50593 -31.67543 -30.02695 -29.17563 -27.79200 -26.55943 -24.86554 -24.04923 -22.71877 -21.88981 -21.63505 -21.08738 -19.66258 -19.01551 -17.68265 -17.52248 -17.32438 -17.05171 -16.91851 -16.76480 -16.53039 -16.17568 -15.52074 -15.33318 -15.12658 -14.99670 -14.82055 -14.70497 -14.17081 -14.11233 -14.03604 -13.63524 -13.58764 -13.42942 -13.22740 -13.11362 -13.01454 -12.83949 -12.37740 -12.35195 -12.15913 -11.86865 -11.83868 -11.37911 -11.07402 -10.95657 -10.79200 -10.36974 -10.29463 -9.90327 -9.55798 -9.49360 -8.35332 -6.51411 0.03629 0.29793 1.38684 1.47966 1.61274 1.69608 2.08259 2.40823 2.57108 2.94604 3.00482 3.05757 3.15612 3.54670 3.59082 3.67683 3.77334 3.94198 4.02927 4.19910 4.23903 4.32653 4.40574 4.42891 4.44139 4.53024 4.53579 4.60728 4.63211 4.75489 4.80069 4.86707 4.93988 5.03326 5.06730 5.07771 5.24592 5.28819 5.38912 5.44421 5.50207 5.51903 5.67913 5.87044 6.04098 6.07915 6.59722 6.94559 7.12389 7.29987 7.48783 8.78939 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.002403 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.768043 B =11651.116561 C =12193.394556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.035 0.965 9 C 0.218 3.782 10 O -0.572 6.572 11 C -0.128 4.128 12 C 0.111 3.889 13 N -0.630 5.630 14 C 0.717 3.283 15 O -0.637 6.637 16 N -0.726 5.726 17 C 0.185 3.815 18 C -0.104 4.104 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.077 4.077 24 C 0.088 3.912 25 O -0.382 6.382 26 C 0.087 3.913 27 C 0.123 3.877 28 H 0.268 0.732 29 H 0.377 0.623 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.878 -2.200 -11.035 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.238 1.238 6 H -0.134 1.134 7 C -0.590 4.590 8 H 0.053 0.947 9 C 0.177 3.823 10 O -0.380 6.380 11 C -0.166 4.166 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.419 3.581 15 O -0.519 6.519 16 N -0.383 5.383 17 C 0.062 3.938 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.096 4.096 24 C 0.012 3.988 25 O -0.301 6.301 26 C 0.011 3.989 27 C -0.001 4.001 28 H 0.077 0.923 29 H 0.225 0.775 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 27.105 -2.631 -11.240 29.461 hybrid contribution -1.164 0.415 0.488 1.328 sum 25.941 -2.217 -10.752 28.169 Atomic orbital electron populations 1.70073 1.08628 1.28551 1.50332 1.25815 0.95175 1.03420 0.92136 0.86072 0.80606 0.77120 0.79675 1.19098 1.23833 1.13402 1.21419 0.90898 0.93439 1.53220 0.94714 1.19800 0.90876 0.87771 0.83838 1.86433 1.78266 1.57101 1.16152 1.23058 0.95588 0.99858 0.98101 1.22428 0.97251 0.79673 1.01720 1.47609 1.27384 1.06832 1.54892 1.15580 0.80246 0.83003 0.79308 1.90873 1.74806 1.23148 1.63091 1.45008 1.26167 1.11674 1.55421 1.19980 0.88709 0.87445 0.97700 1.19708 0.94385 1.02054 0.94266 1.21310 0.99435 0.97876 0.92807 1.20644 0.91030 0.98374 1.01309 1.21372 0.97068 0.99828 0.95127 1.21193 0.97273 1.01184 0.95027 1.20426 0.91266 0.97409 1.00452 1.21913 0.86577 1.02250 0.88013 1.89106 1.30820 1.94173 1.16048 1.21935 0.83549 1.01623 0.91798 1.22324 0.84773 0.99108 0.93908 0.92306 0.77482 0.90134 0.90148 0.89946 0.88291 0.75562 0.91055 0.91147 0.84050 0.83181 0.84638 0.89169 0.87476 0.87018 0.89027 0.93693 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 2 C 0.03 1.92 5.47 84.65 0.46 2.38 16 3 Si 0.94 42.13 23.89 68.60 1.64 43.77 16 4 H -0.27 -11.06 7.08 99.48 0.70 -10.36 16 5 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.21 -8.87 5.50 99.48 0.55 -8.32 16 7 C -0.55 -29.75 8.82 25.60 0.23 -29.52 16 8 H 0.03 2.12 7.82 -2.91 -0.02 2.10 16 9 C 0.22 9.35 0.67 -10.35 -0.01 9.34 16 10 O -0.57 -23.10 10.45 -148.98 -1.56 -24.65 16 11 C -0.13 -4.72 4.83 32.07 0.15 -4.56 16 12 C 0.11 3.17 6.58 86.93 0.57 3.74 16 13 N -0.63 -21.83 3.32 -829.31 -2.76 -24.59 16 14 C 0.72 24.45 8.49 179.06 1.52 25.97 16 15 O -0.64 -27.06 16.67 -4.00 -0.07 -27.13 16 16 N -0.73 -17.29 5.51 -482.30 -2.66 -19.95 16 17 C 0.18 3.79 5.80 85.63 0.50 4.28 16 18 C -0.10 -1.67 5.25 -19.84 -0.10 -1.77 16 19 C -0.10 -1.35 9.70 22.29 0.22 -1.13 16 20 C -0.10 -1.19 10.04 22.22 0.22 -0.96 16 21 C -0.13 -1.85 6.32 -19.72 -0.12 -1.98 16 22 C -0.15 -2.19 6.32 -19.72 -0.12 -2.31 16 23 C -0.08 -1.18 9.70 22.22 0.22 -0.96 16 24 C 0.09 1.14 7.63 71.36 0.54 1.69 16 25 O -0.38 -6.18 11.73 -148.98 -1.75 -7.93 16 26 C 0.09 1.01 7.63 71.36 0.54 1.55 16 27 C 0.12 5.06 6.21 86.73 0.54 5.60 16 28 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 29 H 0.38 13.48 9.08 -74.06 -0.67 12.81 16 30 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 31 H 0.08 2.89 5.00 -2.39 -0.01 2.88 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.10 2.10 7.29 -2.39 -0.02 2.08 16 34 H 0.41 7.79 6.94 -92.70 -0.64 7.14 16 35 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.07 1.52 8.09 -2.38 -0.02 1.50 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.04 2.07 7.66 -2.39 -0.02 2.05 16 45 H 0.06 2.29 8.06 -2.39 -0.02 2.28 16 Total: -1.00 -73.44 363.93 -1.94 -75.38 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.44 Total: 30.00 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.35 Total: 11.35 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.11 Total: -100.79 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -3.37 Total: -59.71 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.64 Total: 43.77 kcal Total: -73.44 -1.94 -75.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591989981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.288 kcal (2) G-P(sol) polarization free energy of solvation -73.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds