Wall clock time and date at job start Tue Mar 31 2020 17:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00162 * 2 1 4 4 H 1.48501 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47635 * 300.00754 * 3 2 1 6 6 H 1.48504 * 109.47116 * 60.00659 * 3 2 1 7 7 C 1.37881 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47274 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47022 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99817 * 179.97438 * 12 11 10 14 14 O 1.21346 * 120.00252 * 0.02562 * 13 12 11 15 15 C 1.49450 * 119.99907 * 179.97438 * 13 12 11 16 16 O 1.21353 * 120.00026 * 0.02562 * 15 13 12 17 17 N 1.34775 * 119.99991 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99895 * 180.02562 * 17 15 13 19 19 H 1.08997 * 110.34280 * 32.87767 * 18 17 15 20 20 C 1.54341 * 110.30061 * 155.00596 * 18 17 15 21 21 C 1.54339 * 102.57704 * 92.65298 * 20 18 17 22 22 C 1.51399 * 105.17432 * 26.26945 * 21 20 18 23 23 C 1.38546 * 130.32421 * 162.79745 * 22 21 20 24 24 C 1.37996 * 120.29294 * 180.02562 * 23 22 21 25 25 C 1.38754 * 119.87845 * 359.97438 * 24 23 22 26 26 O 1.35897 * 120.09249 * 179.97438 * 25 24 23 27 27 C 1.38597 * 119.81172 * 359.97438 * 25 24 23 28 28 C 1.38256 * 109.73833 * 342.80213 * 22 21 20 29 29 H 0.97005 * 119.99702 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47021 * 60.00396 * 9 7 2 31 31 H 1.09005 * 109.47302 * 300.00462 * 9 7 2 32 32 H 1.09000 * 109.46820 * 59.99703 * 10 9 7 33 33 H 1.09005 * 109.47061 * 300.00251 * 10 9 7 34 34 H 1.09008 * 109.47022 * 60.00070 * 11 10 9 35 35 H 1.08995 * 109.47519 * 300.00007 * 11 10 9 36 36 H 0.96997 * 120.00275 * 0.02562 * 12 11 10 37 37 H 0.96997 * 119.99822 * 0.02562 * 17 15 13 38 38 H 1.09002 * 110.82304 * 334.32612 * 20 18 17 39 39 H 1.09005 * 110.81667 * 210.97609 * 20 18 17 40 40 H 1.08998 * 110.30336 * 145.19609 * 21 20 18 41 41 H 1.08995 * 110.30421 * 267.34941 * 21 20 18 42 42 H 1.08004 * 119.84869 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.06328 * 179.97438 * 24 23 22 44 44 H 0.96703 * 114.00625 * 89.99482 * 26 25 24 45 45 H 1.08005 * 119.91012 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4321 -6.1006 -0.0005 13 6 1.9827 -7.3714 0.0004 14 8 0.7897 -7.5931 0.0013 15 6 2.9539 -8.5073 -0.0008 16 8 4.1470 -8.2856 -0.0021 17 7 2.5046 -9.7780 0.0007 18 6 3.4566 -10.8916 0.0001 19 1 4.3560 -10.6215 0.5534 20 6 2.8082 -12.1507 0.6134 21 6 2.2410 -12.8744 -0.6262 22 6 3.1095 -12.4224 -1.7809 23 6 3.2760 -12.9665 -3.0442 24 6 4.1352 -12.3763 -3.9485 25 6 4.8352 -11.2327 -3.5919 26 8 5.6828 -10.6482 -4.4790 27 6 4.6676 -10.6880 -2.3285 28 6 3.8060 -11.2829 -1.4232 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 0.8531 -5.0451 -0.8897 35 1 0.8537 -5.0446 0.8903 36 1 3.3857 -5.9234 -0.0008 37 1 1.5509 -9.9552 0.0021 38 1 2.0088 -11.8783 1.3026 39 1 3.5556 -12.7668 1.1135 40 1 2.3126 -13.9546 -0.4993 41 1 1.2050 -12.5805 -0.7946 42 1 2.7310 -13.8565 -3.3222 43 1 4.2624 -12.8039 -4.9321 44 1 5.2660 -9.9792 -5.0392 45 1 5.2114 -9.7976 -2.0494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597257813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:37 Heat of formation + Delta-G solvation = -102.345197 kcal Electronic energy + Delta-G solvation = -27114.680679 eV Core-core repulsion = 23096.526314 eV Total energy + Delta-G solvation = -4018.154365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.21144 -40.24376 -38.71986 -37.97165 -35.90627 -35.42602 -33.57506 -33.17259 -31.39572 -31.26573 -28.83032 -27.65933 -26.87568 -24.56186 -23.22988 -22.69860 -21.52049 -21.15641 -20.80268 -20.22330 -18.58466 -18.22082 -17.09489 -16.60238 -16.38654 -16.07167 -16.00385 -15.70142 -15.48041 -15.04097 -14.81564 -14.60027 -14.45599 -14.11466 -13.86990 -13.76156 -13.41386 -12.83579 -12.68107 -12.33650 -12.14661 -11.91476 -11.82292 -11.79845 -11.78458 -11.70082 -11.47962 -10.94393 -10.90371 -10.78429 -10.59449 -9.92742 -9.85540 -9.59465 -9.42786 -9.24222 -9.13324 -9.01294 -8.77675 -8.39885 -6.04450 -4.07358 0.78564 0.92793 1.37457 2.31281 3.15219 3.21678 3.29049 3.36750 3.40634 3.67556 3.68943 3.98830 4.09520 4.41566 4.45317 4.52208 4.57066 4.67776 4.75557 4.90888 5.17448 5.22962 5.29933 5.31682 5.36530 5.45744 5.56415 5.56743 5.66486 5.67320 5.89260 5.96591 6.05437 6.06566 6.19188 6.23728 6.40657 6.51651 6.66221 6.87018 6.92999 7.32168 7.36416 7.60066 7.67595 7.71294 7.93969 8.01227 8.35204 8.99386 9.57131 11.06860 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.001974 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.457525 B =14184.255741 C =15075.634625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.511 3.489 16 O -0.517 6.517 17 N -0.693 5.693 18 C 0.182 3.818 19 H 0.105 0.895 20 C -0.127 4.127 21 C -0.084 4.084 22 C -0.095 4.095 23 C -0.096 4.096 24 C -0.136 4.136 25 C 0.100 3.900 26 O -0.498 6.498 27 C -0.110 4.110 28 C -0.099 4.099 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.414 0.586 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.392 0.608 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -30.269 -3.523 31.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.342 5.342 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.292 3.708 16 O -0.392 6.392 17 N -0.347 5.347 18 C 0.077 3.923 19 H 0.123 0.877 20 C -0.165 4.165 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.114 4.114 24 C -0.155 4.155 25 C 0.056 3.944 26 O -0.309 6.309 27 C -0.129 4.129 28 C -0.101 4.101 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.248 0.752 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.306 -30.482 -3.251 31.297 hybrid contribution 0.144 1.353 -0.419 1.424 sum 6.450 -29.129 -3.670 30.059 Atomic orbital electron populations 1.69976 1.06059 1.26613 1.50648 1.25034 0.94876 0.99360 0.95248 0.86514 0.80084 0.83671 0.77601 1.19721 1.20995 1.20990 1.21236 0.93091 0.90859 1.50830 0.92512 1.19037 0.93801 0.90805 0.97717 1.21928 0.99876 0.92939 1.01321 1.21850 0.91733 0.84715 1.02539 1.46076 1.12240 1.04977 1.70949 1.19990 0.88441 0.84502 0.79103 1.90760 1.15982 1.84692 1.48855 1.20405 0.88861 0.84425 0.77135 1.90757 1.16190 1.84701 1.47542 1.45786 1.11203 1.04309 1.73383 1.20475 0.93431 0.86157 0.92200 0.87685 1.22611 1.01437 0.94946 0.97467 1.21105 0.98719 1.01069 0.91223 1.20619 0.97796 0.96127 0.95017 1.20463 0.98612 1.00112 0.92243 1.21357 0.96762 0.96874 1.00471 1.18315 0.92403 0.93996 0.89706 1.84821 1.36601 1.58015 1.51419 1.21051 0.98222 1.00608 0.93049 1.20674 0.97189 0.95979 0.96234 0.92969 0.96199 0.96189 0.92411 0.92435 0.91108 0.91053 0.75304 0.74948 0.89162 0.88941 0.89947 0.89698 0.85598 0.85148 0.75191 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.11 1.92 5.67 -4.05 -0.02 1.90 16 12 N -0.69 -10.15 5.55 -60.73 -0.34 -10.49 16 13 C 0.50 7.28 7.89 -11.58 -0.09 7.19 16 14 O -0.53 -8.71 16.48 5.50 0.09 -8.62 16 15 C 0.51 6.46 7.89 -11.59 -0.09 6.37 16 16 O -0.52 -7.37 16.13 5.49 0.09 -7.28 16 17 N -0.69 -6.74 5.08 -54.20 -0.28 -7.02 16 18 C 0.18 1.52 3.24 -67.89 -0.22 1.30 16 19 H 0.11 0.97 7.56 -51.93 -0.39 0.58 16 20 C -0.13 -0.66 6.65 -25.33 -0.17 -0.83 16 21 C -0.08 -0.44 6.77 -26.84 -0.18 -0.62 16 22 C -0.09 -0.75 6.14 -104.16 -0.64 -1.39 16 23 C -0.10 -0.72 10.03 -39.56 -0.40 -1.12 16 24 C -0.14 -1.13 9.99 -39.48 -0.39 -1.52 16 25 C 0.10 0.99 6.70 -39.26 -0.26 0.72 16 26 O -0.50 -4.58 13.50 -19.42 -0.26 -4.84 16 27 C -0.11 -1.18 9.98 -39.39 -0.39 -1.57 16 28 C -0.10 -0.94 5.77 -104.06 -0.60 -1.54 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 5.52 7.94 -40.82 -0.32 5.19 16 37 H 0.41 3.58 8.10 -40.82 -0.33 3.25 16 38 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.39 1.91 9.06 45.56 0.41 2.32 16 45 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -33.85 386.66 -8.97 -42.83 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.67 Total: 5.45 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.15 Total: -6.42 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.12 Total: -43.35 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.08 Total: -20.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.85 -8.97 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.518 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds