Wall clock time and date at job start Tue Mar 31 2020 16:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47262 * 179.97438 * 7 6 4 9 9 C 1.38223 * 120.01214 * 104.99791 * 8 7 6 10 10 C 1.38223 * 120.02662 * 179.97438 * 9 8 7 11 11 C 1.38271 * 120.04867 * 0.02630 * 10 9 8 12 12 C 1.38180 * 120.02783 * 359.97438 * 11 10 9 13 13 C 1.38432 * 120.01379 * 284.72585 * 8 7 6 14 14 F 1.35105 * 120.02293 * 359.97438 * 13 8 7 15 15 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 16 16 C 1.35313 * 125.86591 * 35.00552 * 15 2 1 17 17 C 1.35355 * 106.17591 * 179.97438 * 16 15 2 18 18 C 1.50703 * 126.75266 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47047 * 124.99534 * 18 17 16 20 20 H 1.07994 * 120.00230 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99756 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00329 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47084 * 59.99672 * 23 21 19 25 25 H 1.48494 * 109.47624 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47135 * 300.00094 * 23 21 19 27 27 N 1.33770 * 106.49870 * 359.97438 * 17 16 15 28 28 N 1.28636 * 108.88359 * 359.73883 * 27 17 16 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 33 33 H 1.09000 * 109.47120 * 300.00214 * 7 6 4 34 34 H 1.09002 * 109.46801 * 59.99643 * 7 6 4 35 35 H 1.08003 * 119.98650 * 0.02562 * 9 8 7 36 36 H 1.07990 * 119.97368 * 180.02562 * 10 9 8 37 37 H 1.07995 * 119.98286 * 179.97438 * 11 10 9 38 38 H 1.07995 * 120.01233 * 179.97438 * 12 11 10 39 39 H 1.07995 * 126.91569 * 359.97323 * 16 15 2 40 40 H 1.08997 * 109.47343 * 244.99945 * 18 17 16 41 41 H 1.09005 * 109.47015 * 4.99843 * 18 17 16 42 42 H 0.97000 * 120.00456 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 6 1.6920 -0.2308 -4.8812 9 6 2.5513 0.5559 -5.6250 10 6 2.0906 1.2069 -6.7540 11 6 0.7698 1.0724 -7.1403 12 6 -0.0911 0.2865 -6.3982 13 6 0.3708 -0.3707 -5.2702 14 9 -0.4685 -1.1442 -4.5472 15 7 2.0183 -0.6905 1.1962 16 6 1.4358 -1.7587 1.7883 17 6 2.2131 -2.0709 2.8515 18 6 1.9882 -3.1902 3.8352 19 6 3.2169 -4.0607 3.8951 20 1 4.0750 -3.8266 3.2825 21 6 3.2456 -5.1560 4.7321 22 7 2.2010 -5.4409 5.4785 23 14 4.7689 -6.2347 4.8069 24 1 5.9315 -5.4198 5.2424 25 1 4.5473 -7.3377 5.7761 26 1 5.0391 -6.8036 3.4621 27 7 3.2202 -1.1904 2.8574 28 7 3.0790 -0.3898 1.8606 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.1494 0.5389 -2.5436 33 1 3.2847 -0.9413 -3.6508 34 1 1.8310 -1.9684 -3.6505 35 1 3.5832 0.6613 -5.3244 36 1 2.7628 1.8209 -7.3347 37 1 0.4109 1.5818 -8.0223 38 1 -1.1228 0.1819 -6.6999 39 1 0.5324 -2.2610 1.4756 40 1 1.7905 -2.7723 4.8223 41 1 1.1345 -3.7882 3.5163 42 1 2.2213 -6.2112 6.0675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603203205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:16 Heat of formation + Delta-G solvation = 44.534449 kcal Electronic energy + Delta-G solvation = -27139.488652 eV Core-core repulsion = 23036.535912 eV Total energy + Delta-G solvation = -4102.952740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39219 -42.53959 -40.23716 -39.39911 -35.52184 -35.20992 -33.30807 -32.15621 -31.19769 -31.03882 -30.16024 -27.53832 -26.90508 -24.92344 -23.39288 -23.28572 -22.40426 -21.68777 -20.45405 -20.12321 -18.35130 -17.84724 -17.12635 -16.98308 -16.33335 -16.17805 -16.06541 -15.69895 -15.43245 -15.10962 -14.70625 -14.45212 -14.22785 -14.06009 -13.79864 -13.62602 -13.26721 -13.03178 -12.85891 -12.74568 -12.64160 -12.18659 -12.10606 -11.89595 -11.63996 -11.59186 -10.92893 -10.63800 -10.60143 -10.35871 -10.01458 -9.69956 -9.60097 -9.50617 -9.37140 -9.25790 -9.17618 -8.34133 -8.02490 -5.90366 -3.89991 0.44540 0.58816 2.08359 2.26836 2.58531 2.86426 3.17411 3.46430 3.47622 3.51656 3.61767 3.66960 3.93475 4.12964 4.20787 4.34082 4.36599 4.50718 4.59997 4.60451 4.70250 4.99791 5.03376 5.13042 5.21339 5.30595 5.34093 5.44363 5.46479 5.53616 5.61734 5.71361 5.78464 5.90736 5.93135 6.18292 6.26013 6.36957 6.96346 7.21252 7.24127 7.61339 7.71042 7.83820 8.08026 8.47039 9.13339 9.38007 9.72188 11.20812 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002251 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.378537 B =12438.172647 C =12758.941479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.133 0.867 4 C 0.504 3.496 5 O -0.503 6.503 6 N -0.723 5.723 7 C 0.163 3.837 8 C -0.143 4.143 9 C -0.071 4.071 10 C -0.132 4.132 11 C -0.083 4.083 12 C -0.157 4.157 13 C 0.115 3.885 14 F -0.132 7.132 15 N -0.291 5.291 16 C -0.067 4.067 17 C 0.035 3.965 18 C 0.093 3.907 19 C -0.500 4.500 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 N -0.255 5.255 28 N -0.105 5.105 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.178 0.822 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 17.737 -28.807 34.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.151 0.849 4 C 0.287 3.713 5 O -0.375 6.375 6 N -0.378 5.378 7 C 0.041 3.959 8 C -0.144 4.144 9 C -0.089 4.089 10 C -0.150 4.150 11 C -0.102 4.102 12 C -0.175 4.175 13 C 0.096 3.904 14 F -0.110 7.110 15 N -0.087 5.087 16 C -0.215 4.215 17 C -0.101 4.101 18 C 0.055 3.945 19 C -0.539 4.539 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.540 5.540 23 Si 0.724 3.276 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.203 1.203 27 N -0.122 5.122 28 N -0.083 5.083 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.195 0.805 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.097 17.776 -28.428 34.271 hybrid contribution -0.602 -1.096 -0.314 1.289 sum -7.699 16.680 -28.742 34.112 Atomic orbital electron populations 1.22151 0.90050 1.05015 1.04617 1.21207 0.96954 0.97705 0.81421 0.84915 1.20662 0.81027 0.85257 0.84399 1.90871 1.35656 1.24904 1.86046 1.45875 1.54740 1.32459 1.04729 1.20106 0.99932 0.95852 0.80055 1.19959 0.92850 1.02299 0.99330 1.21081 0.99771 0.94085 0.94001 1.21271 0.96081 1.00426 0.97201 1.21124 0.93249 0.96778 0.99006 1.21220 1.01633 0.99503 0.95189 1.17634 0.87653 0.93289 0.91865 1.91553 1.70413 1.72433 1.76592 1.46649 1.18792 1.23006 1.20222 1.23168 1.04463 0.94689 0.99147 1.22969 0.90866 0.98289 0.97977 1.17719 0.98038 0.87613 0.91174 1.21020 1.00002 1.09332 1.23544 0.92319 1.24961 0.96376 0.97610 0.95502 1.69936 1.29330 1.28274 1.26455 0.86574 0.83477 0.79815 0.77695 1.20109 1.21369 1.20329 1.75037 1.21147 1.03989 1.12069 1.78185 1.03525 1.22969 1.03609 0.90263 0.89597 0.89626 0.76412 0.89705 0.89902 0.84552 0.84950 0.84785 0.84437 0.80489 0.94304 0.94588 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.73 37.16 0.32 -0.95 16 2 C 0.13 1.59 3.65 -69.09 -0.25 1.33 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.50 6.53 7.22 -10.99 -0.08 6.45 16 5 O -0.50 -9.47 16.42 5.56 0.09 -9.38 16 6 N -0.72 -6.27 5.44 -61.47 -0.33 -6.61 16 7 C 0.16 1.43 5.49 -5.19 -0.03 1.40 16 8 C -0.14 -0.96 5.25 -104.56 -0.55 -1.51 16 9 C -0.07 -0.37 9.67 -39.59 -0.38 -0.75 16 10 C -0.13 -0.53 10.04 -39.58 -0.40 -0.93 16 11 C -0.08 -0.33 10.04 -39.59 -0.40 -0.73 16 12 C -0.16 -0.82 10.03 -39.51 -0.40 -1.22 16 13 C 0.12 0.81 7.25 -39.42 -0.29 0.53 16 14 F -0.13 -1.16 16.75 2.25 0.04 -1.12 16 15 N -0.29 -5.27 2.75 -55.89 -0.15 -5.42 16 16 C -0.07 -1.33 10.59 -17.05 -0.18 -1.51 16 17 C 0.04 0.87 6.44 -82.77 -0.53 0.34 16 18 C 0.09 2.56 5.55 -29.03 -0.16 2.40 16 19 C -0.50 -15.19 9.09 -34.44 -0.31 -15.50 16 20 H 0.06 1.84 7.74 -52.49 -0.41 1.43 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 23 Si 0.90 23.11 29.54 -169.99 -5.02 18.09 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 N -0.25 -6.47 12.40 33.29 0.41 -6.06 16 28 N -0.10 -2.30 13.17 60.35 0.79 -1.51 16 29 H 0.08 0.70 7.17 -51.93 -0.37 0.33 16 30 H 0.09 0.39 7.56 -51.93 -0.39 0.00 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 2.25 7.88 -40.82 -0.32 1.93 16 33 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.14 0.54 8.00 -52.48 -0.42 0.12 16 36 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 37 H 0.13 0.22 8.06 -52.49 -0.42 -0.20 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.18 2.92 7.30 -52.49 -0.38 2.54 16 40 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -39.29 372.29 -6.78 -46.07 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.22 Total: -3.81 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.73 Total: -9.06 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.46 Total: -46.39 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.29 -6.78 -46.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603203205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.607 kcal (2) G-P(sol) polarization free energy of solvation -39.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds