Wall clock time and date at job start Tue Mar 31 2020 16:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35895 * 116.99961 * 2 1 4 4 C 1.38800 * 120.08026 * 0.02562 * 3 2 1 5 5 C 1.38000 * 119.92210 * 179.89162 * 4 3 2 6 6 C 1.38556 * 120.39604 * 359.96736 * 5 4 3 7 7 C 1.38429 * 119.91343 * 0.20159 * 6 5 4 8 8 C 1.38452 * 120.08184 * 180.02562 * 3 2 1 9 9 O 1.35854 * 121.79805 * 179.71249 * 7 6 5 10 10 C 1.42825 * 117.86660 * 17.24283 * 9 7 6 11 11 C 1.53403 * 108.37607 * 310.80770 * 10 9 7 12 12 H 1.09005 * 109.69504 * 304.98953 * 11 10 9 13 13 C 1.50706 * 109.70098 * 184.43493 * 11 10 9 14 14 O 1.20825 * 119.99620 * 274.92685 * 13 11 10 15 15 O 1.34222 * 119.99854 * 94.91939 * 13 11 10 16 16 C 1.45204 * 116.99605 * 183.81006 * 15 13 11 17 17 C 1.53008 * 109.47067 * 181.99378 * 16 15 13 18 18 C 1.50703 * 115.54828 * 294.92087 * 17 16 15 19 19 H 1.07995 * 119.99804 * 95.57891 * 18 17 16 20 20 C 1.37873 * 120.00004 * 275.58007 * 18 17 16 21 21 N 1.31514 * 120.00052 * 6.30973 * 20 18 17 22 22 Si 1.86800 * 120.00151 * 186.31596 * 20 18 17 23 23 H 1.48492 * 109.47147 * 179.97438 * 22 20 18 24 24 H 1.48508 * 109.46737 * 299.99565 * 22 20 18 25 25 H 1.48498 * 109.47272 * 59.99594 * 22 20 18 26 26 C 1.52995 * 117.51569 * 80.61711 * 17 16 15 27 27 C 1.52996 * 117.49752 * 149.24762 * 17 16 15 28 28 C 1.50788 * 118.70645 * 180.43704 * 6 5 4 29 29 H 1.08998 * 109.47347 * 299.99754 * 1 2 3 30 30 H 1.09004 * 109.47450 * 59.99752 * 1 2 3 31 31 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.03560 * 359.87944 * 4 3 2 33 33 H 1.08002 * 119.80265 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.91117 * 0.03955 * 8 3 2 35 35 H 1.09004 * 109.68374 * 191.08061 * 10 9 7 36 36 H 1.09007 * 109.71184 * 70.54357 * 10 9 7 37 37 H 1.08992 * 109.47261 * 61.99799 * 16 15 13 38 38 H 1.09000 * 109.47340 * 301.99353 * 16 15 13 39 39 H 0.97003 * 120.00564 * 174.95937 * 21 20 18 40 40 H 1.08999 * 117.50116 * 214.96792 * 26 17 16 41 41 H 1.09003 * 117.50121 * 359.97438 * 26 17 16 42 42 H 1.08997 * 117.50001 * 359.97438 * 27 17 16 43 43 H 1.09006 * 117.49732 * 144.99834 * 27 17 16 44 44 H 1.09001 * 109.43234 * 77.56043 * 28 6 5 45 45 H 1.09000 * 109.43630 * 317.69386 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9215 3.6038 0.0028 6 6 3.3048 3.6821 0.0052 7 6 4.0618 2.5231 0.0012 8 6 3.4284 1.2853 -0.0005 9 8 5.4200 2.5552 -0.0025 10 6 6.0599 3.7759 0.3722 11 6 5.4155 4.9221 -0.4179 12 1 5.4649 4.7058 -1.4851 13 6 6.1409 6.2106 -0.1267 14 8 5.8397 6.8679 0.8413 15 8 7.1215 6.6278 -0.9427 16 6 7.8336 7.8325 -0.5552 17 6 8.8726 8.1770 -1.6242 18 6 9.9902 7.1797 -1.7897 19 1 9.9242 6.4161 -2.5506 20 6 11.0968 7.2420 -0.9698 21 7 11.1237 8.0899 0.0352 22 14 12.5581 6.1223 -1.2863 23 1 13.6108 6.3837 -0.2721 24 1 12.1242 4.7049 -1.1961 25 1 13.1011 6.3884 -2.6426 26 6 8.3821 8.9030 -2.8785 27 6 9.2080 9.6551 -1.8329 28 6 3.9532 5.0434 0.0177 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2130 2.3216 -0.0010 33 1 1.3326 4.5092 0.0028 34 1 4.0165 0.3794 -0.0016 35 1 7.1229 3.7203 0.1375 36 1 5.9283 3.9471 1.4407 37 1 8.3347 7.6674 0.3985 38 1 7.1269 8.6565 -0.4564 39 1 11.8695 8.0836 0.6554 40 1 8.8679 8.6594 -3.8234 41 1 7.3190 9.1350 -2.9425 42 1 8.6883 10.3821 -1.2089 43 1 10.2372 9.9062 -2.0899 44 1 3.9079 5.4574 1.0251 45 1 3.4237 5.7036 -0.6692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:53 Heat of formation + Delta-G solvation = -114.114631 kcal Electronic energy + Delta-G solvation = -27963.585849 eV Core-core repulsion = 23912.628371 eV Total energy + Delta-G solvation = -4050.957477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18366 -40.02296 -39.27580 -36.92931 -36.71565 -35.39553 -34.18989 -32.00496 -30.79011 -30.46974 -27.78708 -26.98854 -25.78070 -25.39129 -24.12825 -22.90906 -21.37674 -21.04110 -19.59911 -19.28460 -18.78515 -17.57809 -17.08688 -16.60280 -16.46746 -16.05780 -15.76202 -15.65119 -15.32041 -15.01610 -14.64924 -14.52233 -14.15254 -13.81999 -13.71781 -13.45855 -13.22078 -13.08084 -12.69436 -12.30877 -12.23949 -12.16146 -11.71277 -11.61898 -11.39669 -11.08113 -10.97786 -10.93050 -10.78548 -10.72152 -10.58435 -10.34267 -10.09970 -9.94205 -9.59869 -8.89172 -8.69287 -8.51908 -8.25922 -8.19053 -6.09881 -4.16359 1.13758 1.17071 2.48012 2.68238 3.11623 3.28271 3.33385 3.36020 3.39201 3.57343 4.35726 4.41376 4.47131 4.53710 4.70980 4.72128 4.80821 4.81413 4.94184 5.01695 5.11465 5.14986 5.18076 5.33288 5.38236 5.42880 5.50216 5.67011 5.74108 5.89517 5.92104 5.97644 6.02681 6.18105 6.21497 6.27318 6.29375 6.46306 6.59047 6.68315 6.98208 7.06372 7.13350 7.25376 7.30868 7.41073 7.83106 8.24576 8.36009 8.85214 9.49583 10.98643 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.002499 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.193224 B =11202.691025 C =12076.166971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.155 3.845 4 C -0.238 4.238 5 C -0.042 4.042 6 C -0.187 4.187 7 C 0.171 3.829 8 C -0.183 4.183 9 O -0.302 6.302 10 C 0.076 3.924 11 C -0.121 4.121 12 H 0.117 0.883 13 C 0.464 3.536 14 O -0.516 6.516 15 O -0.332 6.332 16 C 0.115 3.885 17 C 0.037 3.963 18 C -0.491 4.491 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.883 5.883 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.205 4.205 27 C -0.146 4.146 28 C -0.063 4.063 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.944 -11.266 0.640 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.110 3.890 4 C -0.256 4.256 5 C -0.061 4.061 6 C -0.188 4.188 7 C 0.125 3.875 8 C -0.202 4.202 9 O -0.215 6.215 10 C 0.001 3.999 11 C -0.141 4.141 12 H 0.135 0.865 13 C 0.306 3.694 14 O -0.406 6.406 15 O -0.247 6.247 16 C 0.042 3.958 17 C 0.036 3.964 18 C -0.528 4.528 19 H 0.082 0.918 20 C -0.134 4.134 21 N -0.520 5.520 22 Si 0.720 3.280 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.242 4.242 27 C -0.183 4.183 28 C -0.100 4.100 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.616 -11.255 0.981 22.637 hybrid contribution 0.515 0.009 0.073 0.520 sum -19.101 -11.246 1.054 22.191 Atomic orbital electron populations 1.23067 0.78189 1.03939 1.01489 1.86056 1.21480 1.26788 1.88574 1.18515 0.91388 0.84190 0.94927 1.21071 1.00003 0.92061 1.12508 1.20636 0.92839 0.97360 0.95229 1.19682 0.94256 0.94000 1.10900 1.18301 0.82658 0.92373 0.94188 1.19569 0.91456 0.96874 1.12310 1.86061 1.16020 1.36189 1.83225 1.22948 0.97782 0.80478 0.98688 1.21605 0.95726 0.92252 1.04472 0.86458 1.22978 0.79063 0.86439 0.80931 1.90621 1.65022 1.56236 1.28720 1.86547 1.43859 1.45017 1.49252 1.22957 0.91221 0.81038 1.00603 1.18776 0.94038 0.92293 0.91251 1.20351 1.00138 1.13824 1.18528 0.91841 1.25019 0.98114 0.95153 0.95102 1.69954 1.32006 1.35867 1.14128 0.86642 0.82164 0.81059 0.78101 1.21279 1.20058 1.20091 1.22994 0.97360 1.08503 0.95364 1.22548 0.99481 0.95124 1.01157 1.20382 0.91863 0.93735 1.03998 0.92555 0.92523 0.88219 0.85303 0.85281 0.84290 0.85651 0.90466 0.90414 0.94142 0.92759 0.90018 0.91551 0.91612 0.89396 0.88735 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.15 10.50 -19.41 -0.20 -3.35 16 3 C 0.16 1.70 6.68 -39.29 -0.26 1.44 16 4 C -0.24 -2.26 9.04 -39.46 -0.36 -2.62 16 5 C -0.04 -0.43 9.66 -39.55 -0.38 -0.81 16 6 C -0.19 -2.23 5.75 -104.39 -0.60 -2.83 16 7 C 0.17 2.21 6.47 -39.21 -0.25 1.95 16 8 C -0.18 -2.22 9.87 -39.20 -0.39 -2.61 16 9 O -0.30 -4.12 10.27 -19.28 -0.20 -4.32 16 10 C 0.08 1.01 6.31 37.37 0.24 1.25 16 11 C -0.12 -1.69 2.85 -91.53 -0.26 -1.95 16 12 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.46 8.36 6.99 36.01 0.25 8.61 16 14 O -0.52 -10.33 15.74 -18.75 -0.30 -10.62 16 15 O -0.33 -6.98 10.16 -39.24 -0.40 -7.38 16 16 C 0.11 2.65 5.33 37.16 0.20 2.85 16 17 C 0.04 0.90 1.60 -155.66 -0.25 0.65 16 18 C -0.49 -13.09 8.77 -34.44 -0.30 -13.39 16 19 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 20 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 21 N -0.88 -24.44 12.95 55.43 0.72 -23.72 16 22 Si 0.89 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.20 -4.39 9.96 -26.73 -0.27 -4.65 16 27 C -0.15 -3.32 9.47 -26.73 -0.25 -3.57 16 28 C -0.06 -0.77 5.03 -27.81 -0.14 -0.91 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.13 0.89 6.31 -52.49 -0.33 0.56 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 38 H 0.04 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 44 H 0.09 1.21 7.44 -51.93 -0.39 0.83 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -30.35 380.19 -8.35 -38.70 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.55 Total: 2.94 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.13 Total: -13.68 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.72 Total: -23.72 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.10 Total: -25.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.35 -8.35 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.418 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds