Wall clock time and date at job start Tue Mar 31 2020 16:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46840 * 110.99751 * 2 1 4 4 C 1.50141 * 110.33514 * 287.32903 * 3 2 1 5 5 C 1.29824 * 123.28436 * 343.43673 * 4 3 2 6 6 C 1.50697 * 118.55495 * 180.10549 * 5 4 3 7 7 N 1.46497 * 109.47456 * 94.73216 * 6 5 4 8 8 C 1.34780 * 120.00366 * 180.02562 * 7 6 5 9 9 O 1.21604 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.47429 * 119.99956 * 180.02562 * 8 7 6 11 11 C 1.39672 * 120.21756 * 0.25452 * 10 8 7 12 12 C 1.37810 * 119.93747 * 180.27711 * 11 10 8 13 13 C 1.38652 * 120.38325 * 359.72378 * 12 11 10 14 14 C 1.37911 * 120.43793 * 0.02562 * 13 12 11 15 15 C 1.39120 * 120.05120 * 359.97438 * 14 13 12 16 16 S 1.76194 * 120.18970 * 179.97438 * 15 14 13 17 17 C 1.76194 * 100.00243 * 353.15621 * 16 15 14 18 18 H 1.08003 * 119.99769 * 354.34370 * 17 16 15 19 19 C 1.38811 * 120.00344 * 174.35186 * 17 16 15 20 20 N 1.31553 * 119.99502 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00309 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47255 * 59.99377 * 21 19 17 23 23 H 1.48496 * 109.47236 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46804 * 299.99693 * 21 19 17 25 25 C 1.50306 * 122.89163 * 359.82126 * 5 4 3 26 26 C 1.47238 * 111.00040 * 237.06804 * 2 1 3 27 27 H 1.08998 * 109.46857 * 182.93098 * 1 2 3 28 28 H 1.08996 * 109.46705 * 302.93496 * 1 2 3 29 29 H 1.08996 * 109.46589 * 62.93352 * 1 2 3 30 30 H 1.09002 * 109.34040 * 47.78591 * 3 2 1 31 31 H 1.09005 * 109.33543 * 167.45426 * 3 2 1 32 32 H 1.07999 * 118.36015 * 163.18997 * 4 3 2 33 33 H 1.08998 * 109.47041 * 334.73113 * 6 5 4 34 34 H 1.09003 * 109.47617 * 214.73438 * 6 5 4 35 35 H 0.97001 * 120.00026 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.03446 * 359.97438 * 11 10 8 37 37 H 1.07999 * 119.80841 * 179.74372 * 12 11 10 38 38 H 1.07997 * 119.78260 * 180.02562 * 13 12 11 39 39 H 1.07999 * 119.98204 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99870 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.42918 * 103.85931 * 25 5 4 42 42 H 1.08998 * 109.43766 * 223.75614 * 25 5 4 43 43 H 1.09000 * 109.63493 * 294.88812 * 26 2 1 44 44 H 1.08995 * 109.80676 * 174.37790 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 1.7907 2.0083 -1.3439 5 6 1.5194 1.3328 -2.4189 6 6 1.3371 2.0821 -3.7136 7 7 2.6041 2.1021 -4.4489 8 6 2.6804 2.7217 -5.6434 9 8 1.6977 3.2645 -6.1106 10 6 3.9553 2.7413 -6.3835 11 6 5.0855 2.1147 -5.8535 12 6 6.2758 2.1415 -6.5475 13 6 6.3581 2.7828 -7.7740 14 6 5.2506 3.4021 -8.3143 15 6 4.0399 3.3862 -7.6293 16 16 2.6229 4.1768 -8.3159 17 6 3.3571 4.9625 -9.7116 18 1 4.4276 4.9273 -9.8500 19 6 2.5596 5.6270 -10.6332 20 7 1.2556 5.6696 -10.4648 21 14 3.3379 6.4594 -12.1134 22 1 4.0603 5.4486 -12.9268 23 1 2.2786 7.0931 -12.9388 24 1 4.2938 7.4979 -11.6514 25 6 1.3851 -0.1642 -2.4302 26 6 1.9968 -0.7473 -1.1537 27 1 -0.3633 -1.0263 0.0525 28 1 -0.3632 0.5587 0.8625 29 1 -0.3632 0.4676 -0.9151 30 1 1.4795 1.9555 0.7618 31 1 3.0619 1.3481 0.2234 32 1 1.8695 3.0827 -1.4195 33 1 1.0243 3.1043 -3.5009 34 1 0.5753 1.5870 -4.3159 35 1 3.3881 1.6695 -4.0760 36 1 5.0280 1.6139 -4.8983 37 1 7.1494 1.6599 -6.1338 38 1 7.2957 2.7975 -8.3098 39 1 5.3230 3.8992 -9.2704 40 1 0.6983 6.1336 -11.1090 41 1 0.3300 -0.4332 -2.4823 42 1 1.9056 -0.5685 -3.2983 43 1 1.7247 -1.7990 -1.0644 44 1 3.0819 -0.6516 -1.1908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775891226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:56 Heat of formation + Delta-G solvation = 16.360009 kcal Electronic energy + Delta-G solvation = -25233.267562 eV Core-core repulsion = 21663.013512 eV Total energy + Delta-G solvation = -3570.254050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.13958 -39.29598 -37.47804 -35.26830 -32.76147 -32.67802 -31.25186 -30.56692 -30.28095 -28.16024 -25.83842 -25.82199 -23.93714 -22.99998 -22.06301 -21.72476 -20.14207 -18.47562 -17.75445 -17.22114 -16.22712 -15.88875 -15.84781 -15.41417 -15.11529 -14.94938 -14.77951 -14.43364 -14.10578 -13.91022 -13.71936 -13.48432 -13.05241 -12.99245 -12.74890 -12.62110 -12.38790 -12.16268 -11.80262 -11.79563 -11.59137 -11.48817 -11.22741 -11.18936 -10.97455 -10.94988 -10.34134 -9.88188 -9.72288 -9.51420 -9.18243 -8.80404 -8.73566 -8.64425 -8.34215 -8.07333 -6.54611 -6.46743 -4.17515 1.52254 1.74208 2.00810 3.09929 3.13370 3.17578 3.41064 3.50845 3.63179 3.71724 4.06253 4.43319 4.48983 4.49394 4.69710 4.82550 4.94165 4.95355 5.11619 5.15617 5.21049 5.29110 5.30165 5.37671 5.44831 5.47824 5.52769 5.58900 5.60631 5.66113 5.68888 5.79148 5.97803 6.10644 6.17616 6.37668 6.57364 6.58897 6.64628 6.71381 6.76300 6.84174 7.01871 7.12289 7.43713 7.58117 7.89441 8.15062 8.77536 8.99219 10.56499 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002637 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.824952 B =10615.668213 C =11665.544194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.134 4.134 6 C 0.159 3.841 7 N -0.734 5.734 8 C 0.551 3.449 9 O -0.509 6.509 10 C -0.178 4.178 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.057 4.057 16 S 0.185 5.815 17 C -0.597 4.597 18 H 0.090 0.910 19 C 0.084 3.916 20 N -0.858 5.858 21 Si 0.919 3.081 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.270 1.270 25 C -0.122 4.122 26 C 0.051 3.949 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.395 0.605 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.275 0.725 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -11.130 18.149 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.255 5.255 3 C -0.049 4.049 4 C -0.191 4.191 5 C -0.134 4.134 6 C 0.035 3.965 7 N -0.388 5.388 8 C 0.341 3.659 9 O -0.387 6.387 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.177 4.177 16 S 0.449 5.551 17 C -0.743 4.743 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.491 5.491 21 Si 0.744 3.256 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.195 1.195 25 C -0.160 4.160 26 C -0.077 4.077 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.921 -10.663 18.311 21.209 hybrid contribution 1.945 0.725 -1.968 2.860 sum 2.866 -9.939 16.343 19.341 Atomic orbital electron populations 1.22464 0.87469 1.02140 1.01182 1.62754 1.08392 1.13263 1.41119 1.21148 1.01337 0.88283 0.94145 1.22931 0.99842 1.00739 0.95548 1.21037 1.02024 0.95519 0.94864 1.20213 0.87073 0.99598 0.89596 1.45857 1.12617 1.59239 1.21126 1.18345 0.88680 0.78498 0.80404 1.90786 1.37204 1.43738 1.66927 1.19098 0.93641 1.09701 0.96837 1.20883 0.92480 0.96828 0.97878 1.20631 0.97359 1.05980 0.97186 1.21085 0.97660 0.95965 0.95169 1.21439 0.92086 1.02738 1.01577 1.23091 1.01478 0.97638 0.95445 1.84756 1.02753 1.46835 1.20726 1.24021 0.97393 1.40026 1.12865 0.89193 1.25100 0.94607 0.95012 0.98026 1.69968 1.03878 1.39197 1.36030 0.86201 0.79058 0.79585 0.80732 1.19479 1.20544 1.19464 1.21066 1.02394 0.92390 1.00149 1.22283 1.00037 0.98023 0.87355 0.91459 0.91514 0.94449 0.89684 0.89310 0.86895 0.91265 0.91230 0.77056 0.87266 0.87075 0.86998 0.84367 0.91463 0.90337 0.90014 0.90156 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 8.91 60.07 0.54 0.65 16 2 N -0.53 -4.26 5.29 -244.41 -1.29 -5.55 16 3 C 0.08 0.60 5.94 -5.28 -0.03 0.57 16 4 C -0.17 -1.51 9.07 -35.97 -0.33 -1.84 16 5 C -0.13 -1.30 4.62 -100.93 -0.47 -1.76 16 6 C 0.16 2.04 5.72 -5.20 -0.03 2.01 16 7 N -0.73 -10.50 5.50 -62.57 -0.34 -10.84 16 8 C 0.55 10.73 7.75 -12.52 -0.10 10.63 16 9 O -0.51 -12.00 13.77 5.27 0.07 -11.93 16 10 C -0.18 -3.52 5.89 -104.75 -0.62 -4.14 16 11 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 12 C -0.19 -2.87 10.02 -39.58 -0.40 -3.27 16 13 C -0.08 -1.31 10.03 -39.55 -0.40 -1.70 16 14 C -0.15 -3.21 9.22 -39.37 -0.36 -3.57 16 15 C -0.06 -1.30 6.15 -38.39 -0.24 -1.53 16 16 S 0.18 4.98 18.56 -107.50 -2.00 2.99 16 17 C -0.60 -16.50 9.00 30.94 0.28 -16.22 16 18 H 0.09 2.35 4.98 -52.48 -0.26 2.09 16 19 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 20 N -0.86 -24.82 13.22 55.49 0.73 -24.09 16 21 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.12 -1.01 5.24 -28.03 -0.15 -1.16 16 26 C 0.05 0.38 6.06 -3.59 -0.02 0.36 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 29 H 0.04 0.30 5.68 -51.93 -0.29 0.01 16 30 H 0.08 0.57 7.98 -51.93 -0.41 0.16 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.04 7.81 -52.49 -0.41 0.63 16 33 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 34 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 35 H 0.39 4.63 6.49 -40.82 -0.27 4.36 16 36 H 0.11 1.32 6.40 -52.49 -0.34 0.98 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.14 3.01 5.04 -52.49 -0.26 2.74 16 40 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 0.65 6.94 -51.92 -0.36 0.29 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -31.86 366.28 -11.06 -42.92 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.95 Total: 5.41 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.79 Total: -20.10 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.90 Total: -40.48 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.00 Total: 2.99 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.86 -11.06 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775891226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.284 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds