Wall clock time and date at job start Tue Mar 31 2020 16:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46840 * 110.99751 * 2 1 4 4 C 1.50141 * 110.33514 * 287.32903 * 3 2 1 5 5 C 1.29824 * 123.28436 * 343.43673 * 4 3 2 6 6 C 1.50697 * 118.55495 * 180.10549 * 5 4 3 7 7 N 1.46497 * 109.47456 * 94.73216 * 6 5 4 8 8 C 1.34780 * 120.00366 * 180.02562 * 7 6 5 9 9 O 1.21604 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.47429 * 119.99956 * 180.02562 * 8 7 6 11 11 C 1.39672 * 120.21756 * 0.25452 * 10 8 7 12 12 C 1.37810 * 119.93747 * 180.27711 * 11 10 8 13 13 C 1.38652 * 120.38325 * 359.72378 * 12 11 10 14 14 C 1.37911 * 120.43793 * 0.02562 * 13 12 11 15 15 C 1.39120 * 120.05120 * 359.97438 * 14 13 12 16 16 S 1.76194 * 120.18970 * 179.97438 * 15 14 13 17 17 C 1.76194 * 100.00243 * 353.15621 * 16 15 14 18 18 H 1.08003 * 119.99769 * 354.34370 * 17 16 15 19 19 C 1.38811 * 120.00344 * 174.35186 * 17 16 15 20 20 N 1.31553 * 119.99502 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00309 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47255 * 59.99377 * 21 19 17 23 23 H 1.48496 * 109.47236 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46804 * 299.99693 * 21 19 17 25 25 C 1.50306 * 122.89163 * 359.82126 * 5 4 3 26 26 C 1.47238 * 111.00040 * 237.06804 * 2 1 3 27 27 H 1.08998 * 109.46857 * 182.93098 * 1 2 3 28 28 H 1.08996 * 109.46705 * 302.93496 * 1 2 3 29 29 H 1.08996 * 109.46589 * 62.93352 * 1 2 3 30 30 H 1.09002 * 109.34040 * 47.78591 * 3 2 1 31 31 H 1.09005 * 109.33543 * 167.45426 * 3 2 1 32 32 H 1.07999 * 118.36015 * 163.18997 * 4 3 2 33 33 H 1.08998 * 109.47041 * 334.73113 * 6 5 4 34 34 H 1.09003 * 109.47617 * 214.73438 * 6 5 4 35 35 H 0.97001 * 120.00026 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.03446 * 359.97438 * 11 10 8 37 37 H 1.07999 * 119.80841 * 179.74372 * 12 11 10 38 38 H 1.07997 * 119.78260 * 180.02562 * 13 12 11 39 39 H 1.07999 * 119.98204 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99870 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.42918 * 103.85931 * 25 5 4 42 42 H 1.08998 * 109.43766 * 223.75614 * 25 5 4 43 43 H 1.09000 * 109.63493 * 294.88812 * 26 2 1 44 44 H 1.08995 * 109.80676 * 174.37790 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 1.7907 2.0083 -1.3439 5 6 1.5194 1.3328 -2.4189 6 6 1.3371 2.0821 -3.7136 7 7 2.6041 2.1021 -4.4489 8 6 2.6804 2.7217 -5.6434 9 8 1.6977 3.2645 -6.1106 10 6 3.9553 2.7413 -6.3835 11 6 5.0855 2.1147 -5.8535 12 6 6.2758 2.1415 -6.5475 13 6 6.3581 2.7828 -7.7740 14 6 5.2506 3.4021 -8.3143 15 6 4.0399 3.3862 -7.6293 16 16 2.6229 4.1768 -8.3159 17 6 3.3571 4.9625 -9.7116 18 1 4.4276 4.9273 -9.8500 19 6 2.5596 5.6270 -10.6332 20 7 1.2556 5.6696 -10.4648 21 14 3.3379 6.4594 -12.1134 22 1 4.0603 5.4486 -12.9268 23 1 2.2786 7.0931 -12.9388 24 1 4.2938 7.4979 -11.6514 25 6 1.3851 -0.1642 -2.4302 26 6 1.9968 -0.7473 -1.1537 27 1 -0.3633 -1.0263 0.0525 28 1 -0.3632 0.5587 0.8625 29 1 -0.3632 0.4676 -0.9151 30 1 1.4795 1.9555 0.7618 31 1 3.0619 1.3481 0.2234 32 1 1.8695 3.0827 -1.4195 33 1 1.0243 3.1043 -3.5009 34 1 0.5753 1.5870 -4.3159 35 1 3.3881 1.6695 -4.0760 36 1 5.0280 1.6139 -4.8983 37 1 7.1494 1.6599 -6.1338 38 1 7.2957 2.7975 -8.3098 39 1 5.3230 3.8992 -9.2704 40 1 0.6983 6.1336 -11.1090 41 1 0.3300 -0.4332 -2.4823 42 1 1.9056 -0.5685 -3.2983 43 1 1.7247 -1.7990 -1.0644 44 1 3.0819 -0.6516 -1.1908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775891226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:55 Heat of formation + Delta-G solvation = -5.584867 kcal Electronic energy + Delta-G solvation = -25234.219164 eV Core-core repulsion = 21663.013512 eV Total energy + Delta-G solvation = -3571.205652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19538 -40.44078 -38.96287 -36.43379 -34.77818 -33.78524 -31.97403 -31.86973 -31.79295 -28.94008 -27.85290 -26.78399 -24.72373 -24.26387 -23.40876 -22.61402 -21.65733 -20.07665 -19.01839 -18.34994 -17.44785 -17.24308 -17.08015 -16.73779 -16.39626 -16.10699 -15.77944 -15.55198 -15.36532 -15.30133 -15.02220 -14.70365 -14.49686 -14.16307 -13.87979 -13.55811 -13.33146 -13.26541 -13.06860 -12.97516 -12.91215 -12.71401 -12.57700 -12.46171 -12.14745 -12.07011 -11.63342 -11.53990 -11.42467 -11.31857 -10.43031 -10.19117 -10.09596 -9.83123 -9.77991 -9.26856 -8.48457 -8.46301 -6.25815 0.01889 0.52667 0.93471 1.25437 1.37053 1.42990 1.63207 1.99566 2.19071 2.41634 2.86384 3.02788 3.06743 3.23492 3.66735 3.72207 3.93486 4.00400 4.07364 4.20452 4.26014 4.35974 4.46781 4.51880 4.57792 4.60116 4.62646 4.68406 4.76316 4.82273 4.84788 4.93509 4.97062 5.07718 5.09767 5.11730 5.34836 5.39181 5.43461 5.46991 5.56227 5.66335 5.84847 6.06828 6.08600 6.13688 6.15072 6.60141 6.94549 7.32500 8.59147 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002637 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.824952 B =10615.668213 C =11665.544194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.539 5.539 3 C 0.080 3.920 4 C -0.155 4.155 5 C -0.140 4.140 6 C 0.160 3.840 7 N -0.707 5.707 8 C 0.545 3.455 9 O -0.558 6.558 10 C -0.183 4.183 11 C -0.053 4.053 12 C -0.157 4.157 13 C -0.069 4.069 14 C -0.175 4.175 15 C -0.072 4.072 16 S 0.062 5.938 17 C -0.603 4.603 18 H 0.095 0.905 19 C 0.024 3.976 20 N -0.906 5.906 21 Si 0.994 3.006 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.117 4.117 26 C 0.054 3.946 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.411 0.589 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.276 0.724 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -13.377 20.680 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.260 5.260 3 C -0.048 4.048 4 C -0.176 4.176 5 C -0.140 4.140 6 C 0.037 3.963 7 N -0.362 5.362 8 C 0.334 3.666 9 O -0.438 6.438 10 C -0.196 4.196 11 C -0.073 4.073 12 C -0.179 4.179 13 C -0.090 4.090 14 C -0.201 4.201 15 C -0.190 4.190 16 S 0.320 5.680 17 C -0.749 4.749 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.541 5.541 21 Si 0.814 3.186 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.155 4.155 26 C -0.074 4.074 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.249 0.751 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.168 0.832 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.946 -12.991 20.937 25.131 hybrid contribution 0.949 1.195 -2.404 2.848 sum 5.895 -11.796 18.533 22.746 Atomic orbital electron populations 1.22484 0.87261 1.02640 1.00870 1.62786 1.08631 1.13349 1.41281 1.21240 1.02229 0.88179 0.93174 1.23079 0.97883 1.00565 0.96067 1.20815 1.03867 0.96154 0.93210 1.20221 0.85967 0.99192 0.90890 1.45654 1.13877 1.57307 1.19324 1.18566 0.88155 0.78367 0.81541 1.90787 1.38791 1.45939 1.68325 1.19477 0.95316 1.09003 0.95801 1.21421 0.90966 0.95341 0.99547 1.21330 0.98606 1.02656 0.95353 1.21551 0.97505 0.93991 0.95918 1.21463 0.92941 1.04244 1.01409 1.22989 1.00097 0.98989 0.96934 1.84941 1.07406 1.51925 1.23697 1.24216 0.97573 1.40317 1.12814 0.88757 1.26168 0.95050 0.95759 1.01216 1.70129 1.05509 1.41018 1.37417 0.85078 0.78195 0.78584 0.76697 1.18378 1.19868 1.18592 1.21039 1.02413 0.91154 1.00898 1.22317 1.00312 0.98389 0.86346 0.90739 0.90946 0.95559 0.88684 0.88053 0.87342 0.92804 0.92716 0.75063 0.82359 0.81562 0.83181 0.86309 0.91504 0.90670 0.90065 0.89160 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.91 127.69 1.14 1.34 16 2 N -0.54 -7.09 5.29 -927.18 -4.90 -12.00 16 3 C 0.08 0.97 5.94 85.39 0.51 1.48 16 4 C -0.16 -2.44 9.07 26.68 0.24 -2.20 16 5 C -0.14 -2.51 4.62 -15.40 -0.07 -2.58 16 6 C 0.16 4.16 5.72 85.63 0.49 4.65 16 7 N -0.71 -19.52 5.50 -470.11 -2.58 -22.11 16 8 C 0.54 21.62 7.75 86.66 0.67 22.29 16 9 O -0.56 -28.24 13.77 -4.04 -0.06 -28.30 16 10 C -0.18 -7.11 5.89 -19.95 -0.12 -7.22 16 11 C -0.05 -1.42 9.53 22.52 0.21 -1.21 16 12 C -0.16 -3.80 10.02 22.27 0.22 -3.58 16 13 C -0.07 -2.06 10.03 22.29 0.22 -1.83 16 14 C -0.18 -7.32 9.22 22.40 0.21 -7.11 16 15 C -0.07 -3.41 6.15 23.04 0.14 -3.27 16 16 S 0.06 3.61 18.56 -56.49 -1.05 2.56 16 17 C -0.60 -35.58 9.00 67.96 0.61 -34.97 16 18 H 0.09 5.23 4.98 -2.91 -0.01 5.21 16 19 C 0.02 1.37 5.49 84.87 0.47 1.84 16 20 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 21 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.12 -1.72 5.24 29.75 0.16 -1.57 16 26 C 0.05 0.65 6.06 86.27 0.52 1.17 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.82 8.05 -2.39 -0.02 0.80 16 29 H 0.03 0.39 5.68 -2.39 -0.01 0.38 16 30 H 0.09 1.01 7.98 -2.39 -0.02 0.99 16 31 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.11 1.83 7.81 -2.91 -0.02 1.80 16 33 H 0.05 1.57 7.85 -2.39 -0.02 1.55 16 34 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.41 8.28 6.49 -92.71 -0.60 7.68 16 36 H 0.16 2.72 6.40 -2.91 -0.02 2.70 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.12 5.36 5.04 -2.91 -0.01 5.35 16 40 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.07 1.16 6.94 -2.38 -0.02 1.15 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 Total: -1.00 -78.82 366.28 -0.23 -79.04 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.43 Total: 23.16 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 5.63 Total: -32.79 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -7.20 Total: -89.95 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.06 Total: -28.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.05 Total: 2.56 kcal Total: -78.82 -0.23 -79.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775891226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.457 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds