Wall clock time and date at job start Tue Mar 31 2020 16:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46892 * 111.00320 * 2 1 4 4 C 1.46902 * 111.00162 * 123.95861 * 2 1 3 5 5 C 1.53007 * 109.47017 * 66.04345 * 4 2 1 6 6 C 1.52996 * 109.46588 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46814 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99710 * 269.99675 * 7 6 5 9 9 C 1.50701 * 109.46881 * 275.96267 * 8 7 6 10 10 H 1.07999 * 120.00640 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99764 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00213 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46503 * 90.00476 * 13 11 9 15 15 H 1.48494 * 109.47224 * 210.00310 * 13 11 9 16 16 H 1.48493 * 109.47064 * 330.00604 * 13 11 9 17 17 C 1.34772 * 120.00427 * 89.99623 * 7 6 5 18 18 O 1.21276 * 119.99940 * 5.81003 * 17 7 6 19 19 C 1.50704 * 120.00024 * 185.80833 * 17 7 6 20 20 S 1.81551 * 109.53472 * 170.67331 * 19 17 7 21 21 C 1.81298 * 102.87077 * 177.26249 * 20 19 17 22 22 C 1.52438 * 110.07934 * 297.39685 * 21 20 19 23 23 C 1.52445 * 110.80713 * 72.63317 * 22 21 20 24 24 S 1.81305 * 110.08121 * 287.36722 * 23 22 21 25 25 H 1.08996 * 109.47183 * 296.04467 * 1 2 3 26 26 H 1.09010 * 109.47210 * 56.04456 * 1 2 3 27 27 H 1.09002 * 109.47537 * 176.04147 * 1 2 3 28 28 H 1.09001 * 109.47278 * 183.95518 * 3 2 1 29 29 H 1.09005 * 109.47562 * 303.95347 * 3 2 1 30 30 H 1.08996 * 109.47153 * 63.95362 * 3 2 1 31 31 H 1.09001 * 109.46794 * 306.04653 * 4 2 1 32 32 H 1.08994 * 109.47403 * 186.04203 * 4 2 1 33 33 H 1.08987 * 109.47272 * 60.00319 * 5 4 2 34 34 H 1.09003 * 109.46680 * 300.00131 * 5 4 2 35 35 H 1.08995 * 109.47903 * 59.99855 * 6 5 4 36 36 H 1.09003 * 109.47188 * 299.99173 * 6 5 4 37 37 H 1.08998 * 109.47195 * 35.96143 * 8 7 6 38 38 H 1.08994 * 109.46881 * 155.96686 * 8 7 6 39 39 H 0.97004 * 120.00009 * 180.02562 * 12 11 9 40 40 H 1.08998 * 109.59926 * 50.47143 * 19 17 7 41 41 H 1.09006 * 109.37305 * 57.58279 * 21 20 19 42 42 H 1.08996 * 109.37207 * 177.33349 * 21 20 19 43 43 H 1.09004 * 109.21343 * 192.97663 * 22 21 20 44 44 H 1.09004 * 109.21212 * 312.33866 * 22 21 20 45 45 H 1.09006 * 109.36956 * 47.55666 * 23 22 21 46 46 H 1.08999 * 109.37206 * 167.18008 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1792 -3.0404 2.1552 7 7 1.8311 -4.4544 1.9947 8 6 0.5742 -4.9665 2.5463 9 6 0.7661 -5.3067 4.0018 10 1 1.7279 -5.1561 4.4694 11 6 -0.2866 -5.8093 4.7369 12 7 -1.4580 -5.9922 4.1677 13 14 -0.0486 -6.2316 6.5409 14 1 -0.3599 -5.0417 7.3730 15 1 -0.9565 -7.3465 6.9123 16 1 1.3597 -6.6423 6.7716 17 6 2.6672 -5.2841 1.3397 18 8 3.7535 -4.8868 0.9754 19 6 2.2520 -6.7056 1.0600 20 16 3.4525 -7.4792 -0.0609 21 6 2.8345 -9.1775 -0.2048 22 6 2.8679 -9.8637 1.1560 23 6 1.7749 -9.3150 2.0661 24 16 2.2040 -7.6412 2.6150 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0827 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8722 0.9233 31 1 1.5610 -0.3874 2.0627 32 1 3.0796 -0.6613 1.1755 33 1 2.0656 -2.6214 0.0450 34 1 0.5470 -2.3475 0.9322 35 1 1.7446 -2.6617 3.0803 36 1 3.2635 -2.9357 2.1936 37 1 -0.2012 -4.2066 2.4500 38 1 0.2758 -5.8615 2.0003 39 1 -2.1987 -6.3455 4.6850 40 1 1.2645 -6.7140 0.5987 41 1 1.8095 -9.1591 -0.5753 42 1 3.4612 -9.7324 -0.9029 43 1 2.7182 -10.9349 1.0213 44 1 3.8393 -9.6929 1.6200 45 1 0.8314 -9.2860 1.5211 46 1 1.6684 -9.9642 2.9351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841384287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:41 Heat of formation + Delta-G solvation = -40.033028 kcal Electronic energy + Delta-G solvation = -25124.430578 eV Core-core repulsion = 21687.175093 eV Total energy + Delta-G solvation = -3437.255485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92724 -38.67021 -36.95784 -36.00805 -34.70151 -33.30754 -30.89184 -29.21473 -28.48710 -28.44497 -26.94141 -24.88926 -23.85473 -22.88070 -21.81729 -20.36766 -18.66153 -18.43924 -18.00697 -17.65047 -17.05742 -16.55396 -16.45271 -16.26966 -16.19604 -15.61930 -15.47287 -15.09564 -14.67729 -14.61450 -14.44300 -14.32809 -13.94686 -13.54530 -13.37324 -13.25402 -13.15475 -13.03569 -12.75096 -12.69617 -12.64565 -12.55548 -12.41863 -12.40513 -12.32178 -12.05122 -11.66077 -11.51268 -11.15502 -10.86334 -10.67917 -10.45983 -9.55259 -9.32468 -8.91922 -8.25358 -8.09707 -6.12959 0.13026 0.35966 1.25547 1.41624 1.45727 1.54135 1.63660 1.82045 2.13054 2.48861 3.02070 3.25429 3.41325 3.64372 3.71723 3.78517 3.91235 4.10772 4.21774 4.34720 4.36740 4.38732 4.43174 4.47082 4.50341 4.59410 4.66196 4.73965 4.77688 4.78992 4.82626 4.89556 5.00189 5.01180 5.11161 5.14570 5.19585 5.26818 5.67278 5.83386 6.03726 6.11178 6.13793 6.43685 6.84205 7.09824 7.50474 8.97736 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.004847 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.275585 B = 5775.380053 C = 8175.931041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.112 4.112 6 C 0.122 3.878 7 N -0.585 5.585 8 C 0.253 3.747 9 C -0.500 4.500 10 H 0.045 0.955 11 C 0.039 3.961 12 N -0.917 5.917 13 Si 0.936 3.064 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.276 1.276 17 C 0.544 3.456 18 O -0.562 6.562 19 C -0.051 4.051 20 S -0.218 6.218 21 C -0.097 4.097 22 C -0.115 4.115 23 C -0.110 4.110 24 S -0.189 6.189 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -0.011 -7.852 8.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.151 4.151 6 C -0.001 4.001 7 N -0.315 5.315 8 C 0.133 3.867 9 C -0.540 4.540 10 H 0.063 0.937 11 C -0.161 4.161 12 N -0.558 5.558 13 Si 0.763 3.237 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.201 1.201 17 C 0.329 3.671 18 O -0.443 6.443 19 C -0.293 4.293 20 S 0.007 5.993 21 C -0.245 4.245 22 C -0.156 4.156 23 C -0.259 4.259 24 S 0.037 5.963 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.159 0.841 43 H 0.137 0.863 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.900 0.745 -7.879 9.309 hybrid contribution -1.922 -0.727 1.240 2.400 sum 2.978 0.018 -6.640 7.277 Atomic orbital electron populations 1.22446 0.86900 1.02249 1.01052 1.61949 1.08747 1.14959 1.43250 1.22422 1.01043 0.87660 1.01143 1.21946 1.00456 0.92151 0.91671 1.21744 1.00830 0.94816 0.97738 1.21365 1.00569 0.79357 0.98815 1.48090 1.21975 1.09052 1.52355 1.19240 0.79619 0.94275 0.93614 1.21211 0.96105 1.41739 0.94941 0.93719 1.25232 0.94729 0.95253 1.00881 1.69978 1.01979 1.46327 1.37477 0.85889 0.77838 0.77950 0.82019 1.20431 1.20807 1.20113 1.19051 0.84231 0.85385 0.78412 1.90625 1.22093 1.76969 1.54575 1.25005 1.04045 0.99288 1.00940 1.87226 1.39678 1.11845 1.60594 1.23702 1.05997 0.92893 1.01915 1.21718 0.98855 1.01939 0.93048 1.23739 1.02167 0.95133 1.04827 1.88363 1.92338 1.06496 1.09059 0.95332 0.90044 0.92150 0.91005 0.90196 0.95212 0.94067 0.90263 0.92908 0.92154 0.89978 0.91129 0.96196 0.94953 0.92753 0.86623 0.88893 0.84103 0.86273 0.90265 0.89460 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.69 16 2 N -0.56 -14.16 5.02 -948.87 -4.76 -18.92 16 3 C 0.03 0.48 9.57 127.69 1.22 1.70 16 4 C 0.07 1.79 4.96 86.31 0.43 2.22 16 5 C -0.11 -3.66 5.46 30.60 0.17 -3.49 16 6 C 0.12 4.56 5.47 86.38 0.47 5.03 16 7 N -0.58 -25.11 2.46 -826.16 -2.03 -27.14 16 8 C 0.25 11.90 4.68 85.63 0.40 12.30 16 9 C -0.50 -25.37 7.46 25.60 0.19 -25.18 16 10 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 11 C 0.04 2.01 5.46 84.65 0.46 2.47 16 12 N -0.92 -49.01 13.29 21.45 0.28 -48.73 16 13 Si 0.94 41.89 29.54 68.60 2.03 43.92 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.54 23.86 6.99 87.66 0.61 24.47 16 18 O -0.56 -26.69 15.46 -3.02 -0.05 -26.73 16 19 C -0.05 -1.99 2.41 71.24 0.17 -1.82 16 20 S -0.22 -7.31 20.65 -54.56 -1.13 -8.43 16 21 C -0.10 -2.11 6.22 71.80 0.45 -1.67 16 22 C -0.11 -2.39 5.58 30.22 0.17 -2.22 16 23 C -0.11 -2.98 6.22 71.80 0.45 -2.53 16 24 S -0.19 -7.38 18.28 -54.56 -1.00 -8.37 16 25 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 1.56 8.12 -2.38 -0.02 1.54 16 27 H 0.06 1.53 6.47 -2.39 -0.02 1.52 16 28 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.08 1.30 8.12 -2.38 -0.02 1.29 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 32 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.02 6.55 -2.39 -0.02 2.01 16 35 H 0.08 3.03 8.07 -2.39 -0.02 3.01 16 36 H 0.07 2.69 7.35 -2.39 -0.02 2.67 16 37 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.03 1.59 5.58 -2.39 -0.01 1.57 16 39 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 40 H 0.12 4.43 7.15 -2.39 -0.02 4.41 16 41 H 0.09 1.87 8.00 -2.39 -0.02 1.86 16 42 H 0.14 2.29 8.14 -2.40 -0.02 2.27 16 43 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 45 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 46 H 0.12 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -62.79 384.65 0.67 -62.13 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.94 Total: 19.32 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.38 Total: 12.97 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -6.51 Total: -94.79 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -14.68 SS G_CDS: -2.12 Total: -16.81 kcal Total: -62.79 0.67 -62.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.094 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds