Wall clock time and date at job start Tue Mar 31 2020 17:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.46932 * 120.62713 * 207.39446 * 9 7 2 11 11 C 1.53189 * 108.89486 * 233.67791 * 10 9 7 12 12 C 1.53045 * 109.30964 * 305.29189 * 11 10 9 13 13 N 1.46499 * 109.46217 * 181.38826 * 12 11 10 14 14 C 1.34768 * 120.00306 * 154.99730 * 13 12 11 15 15 O 1.21619 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47272 * 119.99956 * 179.97438 * 14 13 12 17 17 C 1.36484 * 127.46493 * 359.68855 * 16 14 13 18 18 O 1.34146 * 109.01930 * 179.88977 * 17 16 14 19 19 C 1.32997 * 111.37858 * 0.33514 * 18 17 16 20 20 C 1.37195 * 108.10509 * 359.85492 * 19 18 17 21 21 C 1.46586 * 122.36341 * 179.82859 * 20 19 18 22 22 O 1.21339 * 122.43074 * 168.84507 * 21 20 19 23 23 C 1.52216 * 115.14455 * 348.86728 * 21 20 19 24 24 C 1.53242 * 108.23165 * 42.08516 * 23 21 20 25 25 C 1.50809 * 129.14239 * 179.90806 * 19 18 17 26 26 C 1.53044 * 109.53742 * 61.36557 * 12 11 10 27 27 C 1.47199 * 120.82140 * 27.53341 * 9 7 2 28 28 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58807 * 113.81287 * 10 9 7 30 30 H 1.09001 * 109.58443 * 353.53762 * 10 9 7 31 31 H 1.08994 * 109.49818 * 65.24182 * 11 10 9 32 32 H 1.09000 * 109.49753 * 185.34555 * 11 10 9 33 33 H 1.09005 * 109.46192 * 301.34630 * 12 11 10 34 34 H 0.97000 * 119.99313 * 334.99999 * 13 12 11 35 35 H 1.07998 * 125.49654 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.70827 * 161.76742 * 23 21 20 37 37 H 1.08999 * 109.70970 * 282.35839 * 23 21 20 38 38 H 1.08996 * 109.24062 * 56.09509 * 24 23 21 39 39 H 1.08996 * 109.23909 * 175.49738 * 24 23 21 40 40 H 1.08993 * 109.49763 * 39.34862 * 25 19 18 41 41 H 1.09004 * 109.51846 * 279.26812 * 25 19 18 42 42 H 1.08997 * 109.49664 * 58.58635 * 26 12 11 43 43 H 1.09003 * 109.49381 * 178.64873 * 26 12 11 44 44 H 1.09001 * 109.53355 * 6.53767 * 27 9 7 45 45 H 1.09002 * 109.67913 * 246.23555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0757 -4.6095 -0.9954 12 6 0.8160 -4.6926 -1.8607 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1332 -6.0364 -3.1524 16 6 0.2253 -7.1944 -4.6531 17 6 1.4196 -7.5427 -5.2146 18 8 1.1989 -8.4298 -6.1964 19 6 -0.0980 -8.6930 -6.3295 20 6 -0.7808 -7.9548 -5.3962 21 6 -2.2404 -8.0055 -5.2705 22 8 -2.8300 -7.5148 -4.3304 23 6 -2.9628 -8.7187 -6.4047 24 6 -2.1718 -9.9830 -6.7569 25 6 -0.7866 -9.6200 -7.2994 26 6 0.4915 -3.3081 -2.4265 27 6 0.2213 -2.3393 -1.2711 28 1 -0.4850 0.8401 0.0004 29 1 1.0553 -4.0719 0.8279 30 1 2.7458 -3.5175 0.7404 31 1 2.9055 -4.2369 -1.5959 32 1 2.3195 -5.6002 -0.6118 33 1 -0.0192 -5.0417 -1.2535 34 1 1.9444 -5.8021 -3.2762 35 1 2.3867 -7.1666 -4.9153 36 1 -3.9688 -8.9913 -6.0858 37 1 -3.0176 -8.0643 -7.2747 38 1 -2.0579 -10.5962 -5.8629 39 1 -2.7166 -10.5487 -7.5127 40 1 -0.1938 -10.5267 -7.4193 41 1 -0.8923 -9.1242 -8.2644 42 1 1.3363 -2.9478 -3.0134 43 1 -0.3918 -3.3728 -3.0619 44 1 0.0872 -1.3312 -1.6633 45 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888847837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:08 Heat of formation + Delta-G solvation = -40.572127 kcal Electronic energy + Delta-G solvation = -28467.468553 eV Core-core repulsion = 24451.992869 eV Total energy + Delta-G solvation = -4015.475684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.11974 -39.47439 -39.16297 -37.19865 -36.18301 -34.35306 -33.13380 -31.98653 -30.30448 -29.96047 -29.46043 -28.45305 -25.27787 -23.91079 -23.07471 -22.86657 -22.19861 -21.53739 -19.90290 -19.17308 -19.00480 -17.85108 -16.95352 -16.79183 -16.34903 -15.75663 -15.52685 -15.17039 -14.79352 -14.69963 -14.57717 -14.47147 -14.21443 -13.81936 -13.53080 -13.45007 -13.21127 -12.95464 -12.81236 -12.53691 -12.34447 -12.10352 -11.66598 -11.51789 -11.45752 -11.10325 -10.90665 -10.72469 -10.36899 -10.20695 -10.06543 -10.01462 -9.85475 -9.72348 -9.68394 -9.45249 -8.91608 -8.65513 -8.39138 -6.66829 -5.75489 -3.18166 0.84180 1.12254 2.19133 2.64212 3.27560 3.40017 3.46204 3.47862 3.51494 3.76707 4.10476 4.22926 4.33453 4.37946 4.51570 4.62503 4.79548 4.90027 5.06059 5.11698 5.19311 5.30674 5.34356 5.42517 5.48187 5.51428 5.59750 5.66067 5.66584 5.84705 5.87601 6.11503 6.26311 6.38243 6.46959 6.50531 6.64206 6.67756 6.81625 6.95133 6.98174 7.41235 7.55599 7.71080 7.76457 7.82010 8.46858 8.49102 9.23127 9.86795 10.44038 11.33135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.002468 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.023864 B =11343.575135 C =11768.665297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.138 4.138 12 C 0.153 3.847 13 N -0.722 5.722 14 C 0.568 3.432 15 O -0.500 6.500 16 C -0.169 4.169 17 C 0.000 4.000 18 O -0.157 6.157 19 C 0.044 3.956 20 C -0.224 4.224 21 C 0.404 3.596 22 O -0.404 6.404 23 C -0.164 4.164 24 C -0.112 4.112 25 C -0.041 4.041 26 C -0.146 4.146 27 C 0.173 3.827 28 H 0.254 0.746 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.390 0.610 35 H 0.218 0.782 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -22.790 -17.802 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.050 3.950 13 N -0.373 5.373 14 C 0.353 3.647 15 O -0.374 6.374 16 C -0.174 4.174 17 C -0.068 4.068 18 O -0.051 6.051 19 C -0.009 4.009 20 C -0.227 4.227 21 C 0.278 3.722 22 O -0.274 6.274 23 C -0.202 4.202 24 C -0.149 4.149 25 C -0.078 4.078 26 C -0.186 4.186 27 C 0.047 3.953 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.223 0.777 35 H 0.234 0.766 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.529 -22.326 -17.120 28.139 hybrid contribution 1.075 0.947 -0.158 1.441 sum 1.604 -21.378 -17.279 27.535 Atomic orbital electron populations 1.70040 1.05262 1.25539 1.53646 1.25059 0.95278 0.98443 1.00925 0.86287 0.79072 0.83733 0.77645 1.21493 1.21768 1.20454 1.19179 0.92649 0.84834 1.41664 0.91587 1.44166 1.35504 1.01307 1.50591 1.20834 0.97979 0.86781 0.92314 1.22335 0.96586 0.99741 0.99136 1.21058 0.98821 0.88701 0.86428 1.46176 1.08465 1.45520 1.37179 1.17210 0.85561 0.80191 0.81709 1.90937 1.21758 1.62524 1.62180 1.21225 0.92517 1.02865 1.00798 1.24560 0.99664 0.93021 0.89567 1.83425 1.26257 1.49450 1.46001 1.23159 0.80542 0.99130 0.98044 1.21746 0.96865 1.03675 1.00453 1.21852 0.86617 0.77461 0.86300 1.90724 1.70531 1.35165 1.31012 1.22421 1.00723 0.97784 0.99242 1.21553 0.93418 0.97311 1.02634 1.20344 0.94699 0.97081 0.95671 1.22554 1.00468 0.95060 1.00532 1.20807 0.88591 0.98228 0.87722 0.93568 0.96166 0.92350 0.91873 0.92616 0.89877 0.77725 0.76610 0.88387 0.88060 0.90634 0.88918 0.88557 0.88154 0.92715 0.92807 0.89217 0.96047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 11.18 55.49 0.62 -26.19 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -7.01 9.59 -15.06 -0.14 -7.16 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.08 3.01 -172.09 -0.52 -15.60 16 10 C 0.15 3.10 6.50 -3.71 -0.02 3.08 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.47 16 12 C 0.15 2.78 2.42 -67.89 -0.16 2.62 16 13 N -0.72 -10.72 5.07 -54.89 -0.28 -11.00 16 14 C 0.57 9.66 7.77 -12.59 -0.10 9.56 16 15 O -0.50 -10.95 14.36 -16.02 -0.23 -11.18 16 16 C -0.17 -2.28 6.31 -103.58 -0.65 -2.93 16 17 C 0.00 0.00 11.60 30.10 0.35 0.35 16 18 O -0.16 -1.40 10.46 9.45 0.10 -1.30 16 19 C 0.04 0.39 7.37 -34.63 -0.26 0.13 16 20 C -0.22 -2.83 6.23 -103.64 -0.65 -3.47 16 21 C 0.40 5.39 7.07 -30.19 -0.21 5.18 16 22 O -0.40 -7.50 15.67 -15.77 -0.25 -7.74 16 23 C -0.16 -1.20 6.18 -27.01 -0.17 -1.37 16 24 C -0.11 -0.49 5.81 -26.54 -0.15 -0.65 16 25 C -0.04 -0.18 6.24 -27.76 -0.17 -0.35 16 26 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16 27 C 0.17 4.34 5.33 -3.56 -0.02 4.32 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 34 H 0.39 4.27 7.59 -40.82 -0.31 3.96 16 35 H 0.22 1.09 7.48 -52.49 -0.39 0.69 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 2.50 6.04 -51.93 -0.31 2.19 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -37.64 365.73 -9.26 -46.90 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.44 Total: 0.10 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.75 Total: 3.61 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.18 Total: -52.80 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.38 Total: -20.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.64 -9.26 -46.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888847837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.328 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds