Wall clock time and date at job start Tue Mar 31 2020 17:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.46932 * 120.62713 * 207.39446 * 9 7 2 11 11 C 1.53189 * 108.89486 * 233.67791 * 10 9 7 12 12 C 1.53045 * 109.30964 * 305.29189 * 11 10 9 13 13 N 1.46499 * 109.46217 * 181.38826 * 12 11 10 14 14 C 1.34768 * 120.00306 * 154.99730 * 13 12 11 15 15 O 1.21619 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47272 * 119.99956 * 179.97438 * 14 13 12 17 17 C 1.36484 * 127.46493 * 359.68855 * 16 14 13 18 18 O 1.34146 * 109.01930 * 179.88977 * 17 16 14 19 19 C 1.32997 * 111.37858 * 0.33514 * 18 17 16 20 20 C 1.37195 * 108.10509 * 359.85492 * 19 18 17 21 21 C 1.46586 * 122.36341 * 179.82859 * 20 19 18 22 22 O 1.21339 * 122.43074 * 168.84507 * 21 20 19 23 23 C 1.52216 * 115.14455 * 348.86728 * 21 20 19 24 24 C 1.53242 * 108.23165 * 42.08516 * 23 21 20 25 25 C 1.50809 * 129.14239 * 179.90806 * 19 18 17 26 26 C 1.53044 * 109.53742 * 61.36557 * 12 11 10 27 27 C 1.47199 * 120.82140 * 27.53341 * 9 7 2 28 28 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58807 * 113.81287 * 10 9 7 30 30 H 1.09001 * 109.58443 * 353.53762 * 10 9 7 31 31 H 1.08994 * 109.49818 * 65.24182 * 11 10 9 32 32 H 1.09000 * 109.49753 * 185.34555 * 11 10 9 33 33 H 1.09005 * 109.46192 * 301.34630 * 12 11 10 34 34 H 0.97000 * 119.99313 * 334.99999 * 13 12 11 35 35 H 1.07998 * 125.49654 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.70827 * 161.76742 * 23 21 20 37 37 H 1.08999 * 109.70970 * 282.35839 * 23 21 20 38 38 H 1.08996 * 109.24062 * 56.09509 * 24 23 21 39 39 H 1.08996 * 109.23909 * 175.49738 * 24 23 21 40 40 H 1.08993 * 109.49763 * 39.34862 * 25 19 18 41 41 H 1.09004 * 109.51846 * 279.26812 * 25 19 18 42 42 H 1.08997 * 109.49664 * 58.58635 * 26 12 11 43 43 H 1.09003 * 109.49381 * 178.64873 * 26 12 11 44 44 H 1.09001 * 109.53355 * 6.53767 * 27 9 7 45 45 H 1.09002 * 109.67913 * 246.23555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0757 -4.6095 -0.9954 12 6 0.8160 -4.6926 -1.8607 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1332 -6.0364 -3.1524 16 6 0.2253 -7.1944 -4.6531 17 6 1.4196 -7.5427 -5.2146 18 8 1.1989 -8.4298 -6.1964 19 6 -0.0980 -8.6930 -6.3295 20 6 -0.7808 -7.9548 -5.3962 21 6 -2.2404 -8.0055 -5.2705 22 8 -2.8300 -7.5148 -4.3304 23 6 -2.9628 -8.7187 -6.4047 24 6 -2.1718 -9.9830 -6.7569 25 6 -0.7866 -9.6200 -7.2994 26 6 0.4915 -3.3081 -2.4265 27 6 0.2213 -2.3393 -1.2711 28 1 -0.4850 0.8401 0.0004 29 1 1.0553 -4.0719 0.8279 30 1 2.7458 -3.5175 0.7404 31 1 2.9055 -4.2369 -1.5959 32 1 2.3195 -5.6002 -0.6118 33 1 -0.0192 -5.0417 -1.2535 34 1 1.9444 -5.8021 -3.2762 35 1 2.3867 -7.1666 -4.9153 36 1 -3.9688 -8.9913 -6.0858 37 1 -3.0176 -8.0643 -7.2747 38 1 -2.0579 -10.5962 -5.8629 39 1 -2.7166 -10.5487 -7.5127 40 1 -0.1938 -10.5267 -7.4193 41 1 -0.8923 -9.1242 -8.2644 42 1 1.3363 -2.9478 -3.0134 43 1 -0.3918 -3.3728 -3.0619 44 1 0.0872 -1.3312 -1.6633 45 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888847837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:07 Heat of formation + Delta-G solvation = -66.604570 kcal Electronic energy + Delta-G solvation = -28468.597405 eV Core-core repulsion = 24451.992869 eV Total energy + Delta-G solvation = -4016.604535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.88436 -40.85022 -40.13409 -38.88991 -36.82768 -36.03614 -34.31239 -33.56644 -31.82903 -31.33216 -30.69148 -29.24984 -27.07909 -25.13968 -23.98064 -23.94003 -23.52566 -23.04288 -21.34452 -20.62595 -19.71958 -18.99450 -18.53330 -17.69236 -17.32642 -17.19262 -16.73875 -16.39461 -15.95057 -15.89751 -15.60789 -15.49595 -15.38784 -15.35185 -14.94175 -14.87724 -14.53454 -14.29801 -14.13800 -13.74681 -13.46013 -13.21714 -13.04698 -12.68614 -12.66239 -12.62792 -12.16686 -12.10109 -12.05458 -11.95834 -11.90037 -11.57872 -11.45709 -11.04063 -11.00269 -10.63300 -10.61163 -10.06947 -9.62147 -8.75962 -7.89056 -5.35642 0.00170 0.26730 1.46560 1.48170 1.52617 1.57559 1.69979 2.06169 2.35286 2.50280 3.05057 3.26541 3.43137 3.50292 3.62145 3.77070 3.81972 3.96848 4.02665 4.10121 4.12530 4.26575 4.28439 4.42876 4.48506 4.61911 4.64692 4.75363 4.76866 4.82689 4.86542 4.93269 5.00788 5.03686 5.08849 5.10109 5.19224 5.25315 5.27242 5.41721 5.48580 5.61126 5.65392 5.74639 6.35547 6.55635 6.68102 7.09764 7.26746 7.80757 8.35021 9.18550 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.002468 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.023864 B =11343.575135 C =11768.665297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.260 4.260 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.140 3.860 11 C -0.119 4.119 12 C 0.164 3.836 13 N -0.703 5.703 14 C 0.565 3.435 15 O -0.563 6.563 16 C -0.222 4.222 17 C 0.043 3.957 18 O -0.149 6.149 19 C 0.080 3.920 20 C -0.281 4.281 21 C 0.392 3.608 22 O -0.482 6.482 23 C -0.157 4.157 24 C -0.105 4.105 25 C -0.041 4.041 26 C -0.129 4.129 27 C 0.183 3.817 28 H 0.249 0.751 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.056 0.944 45 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -25.565 -20.976 33.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.390 4.390 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.014 3.986 11 C -0.158 4.158 12 C 0.059 3.941 13 N -0.355 5.355 14 C 0.353 3.647 15 O -0.442 6.442 16 C -0.226 4.226 17 C -0.025 4.025 18 O -0.041 6.041 19 C 0.027 3.973 20 C -0.284 4.284 21 C 0.271 3.729 22 O -0.359 6.359 23 C -0.195 4.195 24 C -0.143 4.143 25 C -0.077 4.077 26 C -0.169 4.169 27 C 0.056 3.944 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.252 0.748 35 H 0.278 0.722 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges 4.383 -25.168 -20.338 32.654 hybrid contribution -0.075 1.716 0.797 1.893 sum 4.308 -23.452 -19.541 30.829 Atomic orbital electron populations 1.70230 1.07082 1.25882 1.55591 1.25935 0.96000 1.02026 1.01344 0.85184 0.78157 0.79071 0.77547 1.21206 1.22574 1.18612 1.19614 0.93224 0.85689 1.40438 0.90420 1.44412 1.35154 1.02624 1.51054 1.21060 0.97924 0.85580 0.94037 1.22131 0.95829 1.00573 0.97259 1.20663 0.98755 0.87520 0.87184 1.45789 1.09504 1.44248 1.36005 1.17801 0.84771 0.80101 0.82019 1.90917 1.24314 1.64706 1.64266 1.21039 0.95165 1.04717 1.01707 1.25224 0.99587 0.90447 0.87289 1.83517 1.26177 1.48956 1.45496 1.23960 0.79944 0.97078 0.96312 1.22005 0.96979 1.06395 1.03043 1.22974 0.87750 0.75792 0.86399 1.90688 1.71921 1.38922 1.34342 1.22490 1.00592 0.99081 0.97318 1.21624 0.93591 0.95512 1.03525 1.20738 0.94157 0.97566 0.95286 1.22284 1.00148 0.95930 0.98525 1.20484 0.87744 0.97371 0.88770 0.94219 0.97459 0.90917 0.89889 0.88880 0.93279 0.74837 0.72226 0.88421 0.86066 0.91547 0.84927 0.85339 0.85172 0.91426 0.94499 0.92523 0.99792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 11.18 21.65 0.24 -58.49 16 2 C -0.06 -3.35 4.92 84.86 0.42 -2.93 16 3 Si 0.97 45.73 29.59 68.60 2.03 47.76 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.26 -14.44 9.59 84.04 0.81 -13.64 16 8 H 0.08 4.08 7.89 -2.91 -0.02 4.05 16 9 N -0.61 -31.65 3.01 -698.38 -2.10 -33.75 16 10 C 0.14 5.80 6.50 86.36 0.56 6.36 16 11 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 12 C 0.16 6.02 2.42 45.02 0.11 6.13 16 13 N -0.70 -20.33 5.07 -445.82 -2.26 -22.59 16 14 C 0.57 19.93 7.77 86.62 0.67 20.60 16 15 O -0.56 -26.99 14.36 16.26 0.23 -26.76 16 16 C -0.22 -5.85 6.31 -19.19 -0.12 -5.97 16 17 C 0.04 0.63 11.60 67.41 0.78 1.41 16 18 O -0.15 -1.97 10.46 10.89 0.11 -1.86 16 19 C 0.08 1.14 7.37 25.47 0.19 1.33 16 20 C -0.28 -7.03 6.23 -19.23 -0.12 -7.15 16 21 C 0.39 11.12 7.07 28.35 0.20 11.32 16 22 O -0.48 -20.04 15.67 17.14 0.27 -19.78 16 23 C -0.16 -2.16 6.18 30.42 0.19 -1.97 16 24 C -0.11 -0.55 5.81 30.72 0.18 -0.37 16 25 C -0.04 -0.15 6.24 29.93 0.19 0.04 16 26 C -0.13 -5.57 5.65 30.67 0.17 -5.40 16 27 C 0.18 9.77 5.33 86.31 0.46 10.23 16 28 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 2.17 7.58 -2.38 -0.02 2.16 16 34 H 0.41 7.72 7.59 -92.71 -0.70 7.02 16 35 H 0.26 1.13 7.48 -2.91 -0.02 1.11 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.13 -0.11 8.14 -2.38 -0.02 -0.13 16 42 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 3.38 6.04 -2.39 -0.01 3.36 16 45 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 Total: -1.00 -94.08 365.73 3.70 -90.38 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.32 Total: 8.67 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.85 Total: 16.42 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.12 Total: -114.84 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: 0.62 Total: -48.39 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -94.08 3.70 -90.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888847837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.775 kcal (2) G-P(sol) polarization free energy of solvation -94.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds