Wall clock time and date at job start Tue Mar 31 2020 17:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48505 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47337 * 300.00074 * 3 2 1 6 6 H 1.48504 * 109.46976 * 60.00606 * 3 2 1 7 7 C 1.37878 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47604 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47615 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00185 * 180.27641 * 11 10 9 13 13 O 1.21585 * 119.99911 * 359.73137 * 12 11 10 14 14 N 1.34778 * 119.99911 * 179.72936 * 12 11 10 15 15 C 1.46497 * 119.99901 * 175.04541 * 14 12 11 16 16 C 1.50700 * 115.55367 * 275.11392 * 15 14 12 17 17 C 1.38247 * 119.94675 * 178.43196 * 16 15 14 18 18 C 1.38187 * 120.11682 * 180.02562 * 17 16 15 19 19 C 1.38710 * 120.06606 * 359.96884 * 18 17 16 20 20 C 1.38976 * 119.81753 * 359.91531 * 19 18 17 21 21 C 1.38201 * 119.93806 * 358.15261 * 16 15 14 22 22 O 1.36105 * 120.78367 * 180.22109 * 20 19 18 23 23 C 1.43187 * 116.69343 * 342.70320 * 22 20 19 24 24 C 1.53472 * 108.23424 * 46.26285 * 23 22 20 25 25 O 1.36106 * 119.39820 * 179.77667 * 19 18 17 26 26 C 1.53006 * 117.49709 * 129.40200 * 15 14 12 27 27 C 1.52998 * 59.99984 * 252.51303 * 26 15 14 28 28 H 0.97005 * 120.00036 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.47191 * 59.99952 * 9 7 2 30 30 H 1.09002 * 109.47507 * 300.00397 * 9 7 2 31 31 H 1.09010 * 109.46754 * 60.00369 * 10 9 7 32 32 H 1.08993 * 109.47230 * 300.00530 * 10 9 7 33 33 H 0.96994 * 119.99550 * 0.02562 * 11 10 9 34 34 H 0.97001 * 119.99759 * 355.05041 * 14 12 11 35 35 H 1.08007 * 119.94386 * 0.03021 * 17 16 15 36 36 H 1.08000 * 119.96988 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.96663 * 0.03238 * 21 16 15 38 38 H 1.08996 * 109.71390 * 286.57566 * 23 22 20 39 39 H 1.09002 * 109.70731 * 165.94680 * 23 22 20 40 40 H 1.08990 * 109.70718 * 180.57084 * 24 23 22 41 41 H 1.09004 * 109.73762 * 59.96588 * 24 23 22 42 42 H 1.08995 * 117.49663 * 0.02562 * 26 15 14 43 43 H 1.08992 * 117.49574 * 145.02478 * 26 15 14 44 44 H 1.08997 * 117.50011 * 252.50869 * 27 26 15 45 45 H 1.09000 * 117.49854 * 107.49214 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9309 -0.0012 12 6 2.1866 -6.0981 0.0035 13 8 3.4024 -6.0981 0.0023 14 7 1.5126 -7.2652 0.0096 15 6 2.2409 -8.5321 -0.0949 16 6 2.5661 -8.9813 -1.4961 17 6 3.2797 -10.1479 -1.6987 18 6 3.5804 -10.5628 -2.9821 19 6 3.1661 -9.8098 -4.0709 20 6 2.4466 -8.6383 -3.8673 21 6 2.1454 -8.2293 -2.5766 22 8 2.0265 -7.8867 -4.9214 23 6 2.6643 -8.1306 -6.1800 24 6 2.7244 -9.6480 -6.4018 25 8 3.4736 -10.2287 -5.3288 26 6 1.9269 -9.6148 0.9396 27 6 3.2544 -8.8569 1.0042 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8725 -3.6048 0.8878 32 1 2.8712 -3.6040 -0.8922 33 1 0.5427 -4.9308 -0.0005 34 1 0.5454 -7.2664 0.0831 35 1 3.6028 -10.7361 -0.8525 36 1 4.1383 -11.4743 -3.1376 37 1 1.5846 -7.3204 -2.4157 38 1 3.6743 -7.7209 -6.1659 39 1 2.0891 -7.6646 -6.9800 40 1 3.2158 -9.8615 -7.3509 41 1 1.7148 -10.0591 -6.4099 42 1 1.1783 -9.3846 1.6976 43 1 1.9554 -10.6522 0.6067 44 1 4.1563 -9.3959 0.7139 45 1 3.3794 -8.1281 1.8050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:44 Heat of formation + Delta-G solvation = -49.624772 kcal Electronic energy + Delta-G solvation = -28048.762542 eV Core-core repulsion = 24032.894306 eV Total energy + Delta-G solvation = -4015.868236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.45183 -40.11407 -38.44253 -37.41056 -36.52386 -34.66656 -33.10171 -32.45015 -31.22829 -30.77085 -29.27305 -28.52735 -25.30054 -24.68615 -23.12083 -22.72643 -22.35666 -21.09769 -20.59690 -19.74385 -18.82492 -17.93950 -17.47703 -17.26125 -16.57785 -16.27413 -15.63920 -15.48937 -15.16054 -14.79393 -14.58309 -14.49849 -14.42377 -13.96002 -13.90077 -13.62059 -13.44551 -13.27351 -13.02789 -12.47435 -12.26104 -11.99265 -11.86721 -11.51475 -11.31010 -11.15527 -11.07947 -10.94948 -10.65868 -10.59718 -10.36478 -10.28934 -9.83881 -9.52616 -9.22207 -9.09429 -8.68217 -8.47762 -8.24409 -8.08166 -6.07524 -4.09841 1.09551 1.18245 2.79022 2.90372 3.00898 3.29757 3.36860 3.37405 3.42992 3.60882 3.93302 3.96873 4.31943 4.41978 4.45083 4.53003 4.61988 4.63960 4.75559 4.83123 4.94815 5.05673 5.17270 5.18443 5.29746 5.30395 5.44543 5.45912 5.72737 5.81303 5.97567 6.03919 6.05297 6.28676 6.32463 6.42862 6.44820 6.69408 6.76175 6.81379 7.03471 7.23830 7.24538 7.59454 7.65947 7.92067 8.28332 8.46969 8.95558 9.04761 9.54841 11.04213 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.002722 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.317725 B =10284.886983 C =11998.227717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.585 6.585 14 N -0.723 5.723 15 C 0.157 3.843 16 C -0.040 4.040 17 C -0.113 4.113 18 C -0.110 4.110 19 C 0.042 3.958 20 C 0.055 3.945 21 C -0.093 4.093 22 O -0.305 6.305 23 C 0.020 3.980 24 C 0.021 3.979 25 O -0.309 6.309 26 C -0.167 4.167 27 C -0.144 4.144 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.398 0.602 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -25.473 -7.669 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.019 3.981 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.462 6.462 14 N -0.379 5.379 15 C 0.068 3.932 16 C -0.041 4.041 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.003 4.003 20 C 0.010 3.990 21 C -0.112 4.112 22 O -0.219 6.219 23 C -0.056 4.056 24 C -0.054 4.054 25 O -0.224 6.224 26 C -0.205 4.205 27 C -0.182 4.182 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.233 0.767 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.723 -25.262 -7.751 26.564 hybrid contribution -0.607 1.165 -0.338 1.357 sum 2.116 -24.096 -8.089 25.506 Atomic orbital electron populations 1.69966 1.06083 1.26708 1.50601 1.24994 0.94889 0.99400 0.95050 0.86465 0.80208 0.83363 0.77583 1.19559 1.20961 1.20952 1.21095 0.93304 0.90359 1.51034 0.92185 1.19326 0.94258 0.91094 0.97785 1.21578 0.95599 0.80349 1.00604 1.45548 1.09843 1.05261 1.78591 1.16064 0.85754 0.80253 0.77982 1.90903 1.11524 1.86378 1.57370 1.44382 1.09304 1.03144 1.81047 1.18537 1.01571 0.85197 0.87929 1.18937 0.98109 0.94573 0.92526 1.20617 0.99703 0.96578 0.96278 1.20301 1.02709 0.99997 0.89845 1.18873 1.02230 0.93799 0.85386 1.18832 1.00769 0.90833 0.88560 1.20168 1.02154 1.00707 0.88182 1.86354 1.60168 1.58971 1.16445 1.23641 1.00131 0.96277 0.85545 1.23613 0.97864 0.93568 0.90378 1.86283 1.59349 1.64310 1.12467 1.23494 1.00355 0.96434 1.00227 1.23281 0.93130 1.01976 0.99794 0.92943 0.95979 0.95995 0.92832 0.92820 0.77444 0.76746 0.84904 0.84729 0.84821 0.90392 0.86014 0.86163 0.90557 0.87852 0.87582 0.87872 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -13.25 5.56 -65.23 -0.36 -13.61 16 12 C 0.70 12.35 8.11 -86.92 -0.70 11.65 16 13 O -0.58 -12.61 15.71 5.29 0.08 -12.53 16 14 N -0.72 -9.48 4.38 -53.50 -0.23 -9.72 16 15 C 0.16 1.89 2.32 -132.97 -0.31 1.58 16 16 C -0.04 -0.50 5.67 -104.63 -0.59 -1.10 16 17 C -0.11 -1.20 8.72 -39.60 -0.35 -1.55 16 18 C -0.11 -1.20 9.96 -39.43 -0.39 -1.59 16 19 C 0.04 0.53 6.49 -39.13 -0.25 0.27 16 20 C 0.05 0.77 6.49 -39.14 -0.25 0.51 16 21 C -0.09 -1.35 9.35 -39.42 -0.37 -1.71 16 22 O -0.30 -4.09 10.42 -32.86 -0.34 -4.43 16 23 C 0.02 0.18 7.26 37.40 0.27 0.45 16 24 C 0.02 0.17 7.26 37.40 0.27 0.44 16 25 O -0.31 -3.49 10.42 -32.86 -0.34 -3.83 16 26 C -0.17 -1.43 9.77 -26.73 -0.26 -1.69 16 27 C -0.14 -1.62 8.86 -26.73 -0.24 -1.85 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.39 6.05 8.49 -40.82 -0.35 5.71 16 34 H 0.40 4.10 8.85 -40.82 -0.36 3.74 16 35 H 0.13 1.05 6.48 -52.48 -0.34 0.71 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 2.07 7.01 -52.49 -0.37 1.70 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.11 0.71 7.40 -51.93 -0.38 0.32 16 44 H 0.10 1.04 7.22 -51.93 -0.37 0.66 16 45 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -35.17 377.16 -9.92 -45.09 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.37 Total: 7.05 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.75 Total: -4.68 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.14 Total: -48.90 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.60 Total: -20.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.17 -9.92 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.533 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds