Wall clock time and date at job start Tue Mar 31 2020 17:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99653 * 2 1 4 4 H 1.48501 * 109.46886 * 269.99455 * 3 2 1 5 5 H 1.48492 * 109.47516 * 29.99918 * 3 2 1 6 6 H 1.48501 * 109.46555 * 150.00293 * 3 2 1 7 7 C 1.38802 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99979 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00664 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64204 * 0.02746 * 9 7 2 11 11 C 1.54329 * 107.26925 * 178.89317 * 10 9 7 12 12 H 1.08998 * 110.87338 * 219.37004 * 11 10 9 13 13 O 1.42901 * 110.71871 * 96.16857 * 11 10 9 14 14 C 1.55154 * 102.94186 * 337.80569 * 11 10 9 15 15 H 1.09002 * 111.00757 * 277.39110 * 14 11 10 16 16 C 1.53001 * 111.00506 * 153.57464 * 14 11 10 17 17 N 1.46498 * 109.47214 * 174.99765 * 16 14 11 18 18 C 1.34776 * 120.00171 * 179.97438 * 17 16 14 19 19 O 1.21591 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.47534 * 120.00123 * 180.02562 * 18 17 16 21 21 C 1.39527 * 120.05352 * 0.02562 * 20 18 17 22 22 C 1.37788 * 120.18162 * 179.97438 * 21 20 18 23 23 C 1.38646 * 119.98040 * 0.16429 * 22 21 20 24 24 C 1.37660 * 120.31595 * 0.02562 * 23 22 21 25 25 C 1.38879 * 120.87178 * 359.63571 * 24 23 22 26 26 O 1.35860 * 111.29658 * 181.02204 * 25 24 23 27 27 C 1.43780 * 109.23903 * 340.65004 * 26 25 24 28 28 C 1.51672 * 132.13208 * 179.08704 * 24 23 22 29 29 C 1.47422 * 125.65276 * 179.97438 * 9 7 2 30 30 H 0.96996 * 119.99917 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.88339 * 59.47725 * 10 9 7 32 32 H 1.09000 * 110.01422 * 298.37877 * 10 9 7 33 33 H 0.96701 * 114.00054 * 66.47613 * 13 11 10 34 34 H 1.09001 * 109.46687 * 54.99903 * 16 14 11 35 35 H 1.08993 * 109.46918 * 295.00046 * 16 14 11 36 36 H 0.97002 * 120.00002 * 0.02562 * 17 16 14 37 37 H 1.07992 * 119.90669 * 359.96945 * 21 20 18 38 38 H 1.08001 * 120.01172 * 180.19170 * 22 21 20 39 39 H 1.07995 * 119.84041 * 180.02562 * 23 22 21 40 40 H 1.09008 * 110.75057 * 269.56311 * 27 26 25 41 41 H 1.08996 * 110.91350 * 146.26890 * 27 26 25 42 42 H 1.09007 * 110.94064 * 313.76307 * 28 24 23 43 43 H 1.09000 * 110.94663 * 77.41863 * 28 24 23 44 44 H 1.09003 * 110.36211 * 85.34152 * 29 9 7 45 45 H 1.08993 * 110.37032 * 323.01734 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0016 10 6 -0.1375 -2.5327 0.0017 11 6 -0.4484 -4.0441 -0.0254 12 1 -1.2990 -4.2540 -0.6738 13 8 -0.6884 -4.5346 1.2951 14 6 0.8519 -4.6560 -0.6104 15 1 0.8565 -4.5965 -1.6987 16 6 1.0370 -6.1008 -0.1422 17 7 2.2059 -6.6832 -0.8060 18 6 2.5645 -7.9560 -0.5452 19 8 1.9175 -8.6209 0.2407 20 6 3.7419 -8.5423 -1.2133 21 6 4.4854 -7.7801 -2.1150 22 6 5.5859 -8.3249 -2.7400 23 6 5.9547 -9.6351 -2.4760 24 6 5.2259 -10.3972 -1.5911 25 6 4.1167 -9.8704 -0.9423 26 8 3.5595 -10.7797 -0.1005 27 6 3.9940 -12.0987 -0.4729 28 6 5.3716 -11.8332 -1.1251 29 6 1.9335 -3.7311 0.0017 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5576 -2.0519 -0.8818 32 1 -0.5566 -2.0842 0.9024 33 1 -1.4899 -4.1824 1.7059 34 1 0.1494 -6.6809 -0.3944 35 1 1.1868 -6.1165 0.9373 36 1 2.7223 -6.1526 -1.4327 37 1 4.1975 -6.7604 -2.3236 38 1 6.1613 -7.7315 -3.4351 39 1 6.8179 -10.0597 -2.9668 40 1 3.3056 -12.5434 -1.1917 41 1 4.0986 -12.7362 0.4049 42 1 5.5381 -12.5019 -1.9697 43 1 6.1740 -11.9259 -0.3932 44 1 2.1663 -4.0420 1.0202 45 1 2.8331 -3.7405 -0.6136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958413557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:14 Heat of formation + Delta-G solvation = -82.573763 kcal Electronic energy + Delta-G solvation = -28157.199415 eV Core-core repulsion = 24139.902403 eV Total energy + Delta-G solvation = -4017.297012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23848 -40.73196 -39.75199 -38.25304 -36.42488 -36.07624 -34.09215 -33.62152 -31.74041 -31.00621 -30.15623 -29.36438 -27.28386 -25.70599 -24.65816 -23.56444 -22.95103 -22.22125 -21.52222 -20.97613 -19.13312 -18.84060 -18.27496 -17.93583 -17.61237 -17.13736 -16.81530 -16.52697 -16.27354 -15.91149 -15.74165 -15.40282 -15.24540 -14.78711 -14.47670 -14.42961 -14.36982 -14.01083 -13.89956 -13.64627 -13.36451 -13.13699 -13.07436 -12.81093 -12.69308 -12.66355 -12.35577 -12.21085 -12.09242 -11.91209 -11.80851 -11.78407 -11.57936 -10.93353 -10.79133 -10.71974 -10.21833 -9.87551 -9.17856 -8.91464 -7.85984 -5.21350 -0.17935 0.29822 1.46438 1.48294 1.56850 1.83735 2.11656 2.30716 2.48915 2.78180 3.26624 3.35780 3.43815 3.55279 3.57485 3.74675 3.89826 3.93821 3.95998 4.00667 4.14049 4.21395 4.32418 4.41550 4.44969 4.55503 4.58780 4.64049 4.81534 4.83099 4.86480 4.89838 4.97402 4.98951 5.16385 5.29287 5.31810 5.39508 5.40826 5.41836 5.52662 5.64513 5.69774 6.13740 6.17295 6.51692 6.92492 7.08947 7.20342 7.75374 8.40131 9.24389 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.002514 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.331642 B =11135.456920 C =12289.497580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.161 3.839 11 C 0.094 3.906 12 H 0.088 0.912 13 O -0.572 6.572 14 C -0.091 4.091 15 H 0.112 0.888 16 C 0.158 3.842 17 N -0.713 5.713 18 C 0.551 3.449 19 O -0.578 6.578 20 C -0.186 4.186 21 C -0.055 4.055 22 C -0.150 4.150 23 C -0.038 4.038 24 C -0.193 4.193 25 C 0.135 3.865 26 O -0.318 6.318 27 C 0.033 3.967 28 C -0.099 4.099 29 C 0.143 3.857 30 H 0.247 0.753 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.391 0.609 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.009 0.991 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.424 -23.457 -8.988 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.034 3.966 12 H 0.106 0.894 13 O -0.380 6.380 14 C -0.111 4.111 15 H 0.130 0.870 16 C 0.034 3.966 17 N -0.366 5.366 18 C 0.340 3.660 19 O -0.459 6.459 20 C -0.190 4.190 21 C -0.074 4.074 22 C -0.167 4.167 23 C -0.056 4.056 24 C -0.194 4.194 25 C 0.087 3.913 26 O -0.232 6.232 27 C -0.041 4.041 28 C -0.136 4.136 29 C 0.018 3.982 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.249 0.751 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.183 0.817 40 H 0.103 0.897 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.027 0.973 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.304 -24.003 -8.335 27.810 hybrid contribution -0.441 1.826 0.337 1.908 sum 10.863 -22.177 -7.998 25.958 Atomic orbital electron populations 1.70151 1.06238 1.25302 1.58440 1.25643 0.96677 1.01000 1.02644 0.85062 0.77536 0.79034 0.77602 1.20879 1.22299 1.19608 1.19469 0.91063 0.83612 1.42828 0.89899 1.44693 1.02309 1.01035 1.86977 1.21669 0.84517 0.91683 0.98592 1.22997 0.96822 0.92569 0.84220 0.89436 1.86399 1.50126 1.71199 1.30266 1.22575 0.95044 0.92594 1.00882 0.87034 1.20835 0.87644 0.91529 0.96579 1.45864 1.31177 1.12835 1.46690 1.18570 0.84476 0.81675 0.81299 1.90781 1.55864 1.61881 1.37377 1.19362 1.00112 0.93738 1.05819 1.21393 0.93943 0.99625 0.92412 1.21425 0.97565 0.95714 1.02038 1.20963 0.98201 0.93050 0.93422 1.21228 0.96809 0.98923 1.02453 1.19881 0.91778 0.90413 0.89181 1.86969 1.69134 1.17184 1.49864 1.24265 0.95351 0.82122 1.02358 1.21876 0.97721 0.91565 1.02426 1.21684 0.95287 0.84360 0.96879 0.94379 0.95648 0.96858 0.76008 0.91502 0.93023 0.75093 0.82953 0.81420 0.81705 0.89663 0.85622 0.86031 0.87800 0.97350 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.64 10.31 21.65 0.22 -56.41 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 3 Si 0.98 45.47 29.55 68.60 2.03 47.49 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -31.91 3.39 -691.96 -2.35 -34.26 16 10 C 0.16 7.77 5.14 86.73 0.45 8.22 16 11 C 0.09 3.42 4.09 31.78 0.13 3.55 16 12 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 13 O -0.57 -20.45 12.24 -148.98 -1.82 -22.27 16 14 C -0.09 -3.06 2.98 -9.40 -0.03 -3.09 16 15 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 16 C 0.16 5.14 4.60 86.38 0.40 5.54 16 17 N -0.71 -20.30 5.45 -466.28 -2.54 -22.84 16 18 C 0.55 18.19 7.76 86.69 0.67 18.87 16 19 O -0.58 -24.30 15.87 10.89 0.17 -24.12 16 20 C -0.19 -4.97 5.89 -19.93 -0.12 -5.09 16 21 C -0.06 -1.01 9.51 22.47 0.21 -0.79 16 22 C -0.15 -1.93 10.05 22.26 0.22 -1.70 16 23 C -0.04 -0.48 10.02 22.23 0.22 -0.25 16 24 C -0.19 -3.35 6.27 -19.54 -0.12 -3.47 16 25 C 0.14 3.54 6.72 23.01 0.15 3.69 16 26 O -0.32 -9.10 10.13 -77.09 -0.78 -9.88 16 27 C 0.03 0.52 8.01 72.57 0.58 1.10 16 28 C -0.10 -1.10 7.12 30.74 0.22 -0.88 16 29 C 0.14 5.86 6.64 86.86 0.58 6.44 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.03 1.35 7.38 -2.38 -0.02 1.33 16 32 H 0.01 0.73 7.44 -2.39 -0.02 0.71 16 33 H 0.39 11.05 9.12 -74.06 -0.68 10.37 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.99 7.55 -2.39 -0.02 1.97 16 36 H 0.41 9.18 6.48 -92.71 -0.60 8.58 16 37 H 0.15 2.11 6.37 -2.91 -0.02 2.09 16 38 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.01 0.39 7.91 -2.39 -0.02 0.37 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -82.91 368.47 -0.41 -83.32 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.24 Total: 22.74 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 4.90 Total: 16.24 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -4.67 Total: -113.52 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -2.43 Total: -56.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -82.91 -0.41 -83.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958413557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.750 kcal (2) G-P(sol) polarization free energy of solvation -82.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds