Wall clock time and date at job start Tue Mar 31 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00392 * 2 1 4 4 H 1.48503 * 109.47050 * 240.00596 * 3 2 1 5 5 H 1.48507 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48489 * 109.47200 * 120.00114 * 3 2 1 7 7 C 1.38818 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99889 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.26641 * 35.62022 * 10 9 7 12 12 C 1.51371 * 110.30185 * 273.54436 * 10 9 7 13 13 C 1.38506 * 130.38552 * 78.29468 * 12 10 9 14 14 C 1.38105 * 120.20988 * 179.97438 * 13 12 10 15 15 C 1.38254 * 119.93674 * 359.97438 * 14 13 12 16 16 C 1.38101 * 119.93160 * 359.97438 * 15 14 13 17 17 C 1.38209 * 109.76193 * 258.27075 * 12 10 9 18 18 C 1.51371 * 109.75815 * 0.04547 * 17 12 10 19 19 C 1.54346 * 110.30264 * 157.80412 * 10 9 7 20 20 H 1.08999 * 110.82109 * 334.14757 * 19 10 9 21 21 N 1.46502 * 110.81918 * 210.80063 * 19 10 9 22 22 C 1.34776 * 119.99689 * 154.99962 * 21 19 10 23 23 O 1.21281 * 120.00363 * 359.97438 * 22 21 19 24 24 C 1.50707 * 119.99647 * 179.97438 * 22 21 19 25 25 H 1.08996 * 109.52229 * 55.00591 * 24 22 21 26 26 C 1.53136 * 109.52361 * 294.86788 * 24 22 21 27 27 O 1.43097 * 109.14156 * 184.85486 * 26 24 22 28 28 C 1.43074 * 113.64784 * 57.85119 * 27 26 24 29 29 C 1.53143 * 109.15229 * 302.08450 * 28 27 26 30 30 O 1.43074 * 109.15014 * 55.31071 * 29 28 27 31 31 H 0.97002 * 119.99890 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99333 * 0.02562 * 9 7 2 33 33 H 1.08000 * 119.89190 * 0.25893 * 13 12 10 34 34 H 1.08005 * 120.02773 * 179.97438 * 14 13 12 35 35 H 1.07994 * 120.03237 * 180.02562 * 15 14 13 36 36 H 1.08011 * 119.88745 * 180.02562 * 16 15 14 37 37 H 1.08997 * 110.30006 * 101.73852 * 18 17 12 38 38 H 1.08996 * 110.30467 * 223.89192 * 18 17 12 39 39 H 0.96999 * 120.00317 * 334.99502 * 21 19 10 40 40 H 1.09002 * 109.52657 * 304.68581 * 26 24 22 41 41 H 1.08998 * 109.52620 * 64.88919 * 26 24 22 42 42 H 1.09002 * 109.52767 * 182.18066 * 28 27 26 43 43 H 1.09005 * 109.52458 * 61.98633 * 28 27 26 44 44 H 1.09001 * 109.52208 * 295.41006 * 29 28 27 45 45 H 1.09003 * 109.52289 * 175.21448 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9666 -3.5682 0.5950 12 6 2.3966 -4.0678 -1.4175 13 6 3.3939 -3.6198 -2.2678 14 6 3.5141 -4.1492 -3.5377 15 6 2.6369 -5.1299 -3.9622 16 6 1.6426 -5.5786 -3.1154 17 6 1.5194 -5.0479 -1.8421 18 6 0.5305 -5.3619 -0.7400 19 6 1.1650 -4.7908 0.5463 20 1 0.4012 -4.3942 1.2151 21 7 1.9720 -5.8073 1.2259 22 6 1.4167 -6.5826 2.1782 23 8 0.2491 -6.4385 2.4731 24 6 2.2467 -7.6287 2.8769 25 1 3.1324 -7.1625 3.3084 26 6 2.6719 -8.7012 1.8699 27 8 3.3618 -9.7469 2.5613 28 6 2.5883 -10.3562 3.5994 29 6 2.1645 -9.2827 4.6061 30 8 1.4732 -8.2379 3.9149 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 4.0825 -2.8573 -1.9351 34 1 4.2926 -3.7973 -4.1985 35 1 2.7298 -5.5452 -4.9548 36 1 0.9580 -6.3451 -3.4476 37 1 -0.4249 -4.8766 -0.9396 38 1 0.3962 -6.4396 -0.6480 39 1 2.9059 -5.9224 0.9903 40 1 1.7888 -9.1110 1.3794 41 1 3.3321 -8.2591 1.1237 42 1 3.1886 -11.1128 4.1048 43 1 1.7019 -10.8214 3.1680 44 1 3.0481 -8.8732 5.0956 45 1 1.5046 -9.7241 5.3530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960246451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:11 Heat of formation + Delta-G solvation = -74.603650 kcal Electronic energy + Delta-G solvation = -28800.867639 eV Core-core repulsion = 24783.916237 eV Total energy + Delta-G solvation = -4016.951402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75624 -39.95126 -38.67904 -36.43177 -36.01938 -34.08428 -32.92532 -31.73330 -31.18072 -29.78776 -28.76363 -27.54768 -26.11459 -25.29822 -23.36440 -22.48825 -21.85396 -20.83560 -20.17961 -20.07103 -17.87949 -17.50590 -17.06932 -16.80252 -16.28830 -16.05134 -15.71351 -15.47638 -15.00788 -14.89230 -14.65326 -14.42235 -14.00453 -13.76568 -13.55850 -13.34431 -13.09779 -12.93490 -12.85241 -12.66974 -12.58927 -11.96238 -11.61751 -11.39868 -11.17013 -11.11107 -11.03752 -10.92403 -10.84208 -10.64766 -10.41962 -10.19239 -9.90584 -9.76962 -9.48990 -9.10159 -8.95890 -8.36467 -8.13043 -7.12333 -5.86291 -3.16972 1.79444 1.84853 2.53239 2.67063 3.30651 3.39086 3.43396 3.44706 3.71808 4.17440 4.19411 4.50373 4.53938 4.56179 4.62909 4.74763 4.76607 4.88178 5.02566 5.08979 5.21832 5.31294 5.37369 5.39813 5.40829 5.46398 5.48081 5.56856 5.71024 5.87113 5.95676 6.06688 6.14702 6.20951 6.32086 6.45325 6.53166 6.54000 6.61089 6.73678 6.86450 6.94193 7.19254 7.44543 7.51434 7.60010 8.21576 8.29653 9.41677 9.92415 10.27905 11.35319 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003458 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.172770 B = 8095.769719 C = 9588.361059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.703 5.703 10 C 0.208 3.792 11 H 0.063 0.937 12 C -0.093 4.093 13 C -0.090 4.090 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.086 4.086 19 C 0.137 3.863 20 H 0.112 0.888 21 N -0.709 5.709 22 C 0.522 3.478 23 O -0.512 6.512 24 C 0.038 3.962 25 H 0.095 0.905 26 C 0.038 3.962 27 O -0.374 6.374 28 C 0.021 3.979 29 C 0.023 3.977 30 O -0.349 6.349 31 H 0.258 0.742 32 H 0.388 0.612 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 -20.120 1.779 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.096 3.904 11 H 0.081 0.919 12 C -0.097 4.097 13 C -0.108 4.108 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.098 4.098 18 C -0.125 4.125 19 C 0.032 3.968 20 H 0.130 0.870 21 N -0.362 5.362 22 C 0.306 3.694 23 O -0.386 6.386 24 C -0.024 4.024 25 H 0.113 0.887 26 C -0.040 4.040 27 O -0.292 6.292 28 C -0.056 4.056 29 C -0.054 4.054 30 O -0.267 6.267 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.944 -19.811 2.059 21.093 hybrid contribution 0.592 0.969 -0.365 1.193 sum 7.537 -18.842 1.694 20.364 Atomic orbital electron populations 1.69650 1.05167 1.26136 1.56349 1.24770 0.95516 0.97791 1.02190 0.86252 0.78585 0.83325 0.77906 1.21129 1.21594 1.21090 1.19129 0.90977 0.83573 1.44024 0.91012 1.42263 1.05812 0.98791 1.87375 1.19835 0.94518 0.86405 0.89645 0.91930 1.21737 0.93986 0.94071 0.99918 1.20617 0.98124 0.98830 0.93276 1.20974 0.99746 0.97764 0.96069 1.20849 0.96417 0.98675 0.99054 1.20476 0.98815 1.00770 0.93176 1.20508 0.97229 0.97455 0.94622 1.21417 0.97948 1.01038 0.92055 1.21939 0.94313 0.87436 0.93134 0.87031 1.45792 1.14734 1.36844 1.38790 1.19825 0.87915 0.81838 0.79857 1.90754 1.16347 1.68306 1.63162 1.22593 0.94981 0.93981 0.90846 0.88710 1.23160 0.98805 0.88199 0.93789 1.88117 1.40819 1.50735 1.49571 1.23323 0.97121 0.95639 0.89552 1.23347 0.98515 0.88722 0.94839 1.88251 1.39432 1.50874 1.48154 0.93190 0.77711 0.86567 0.86724 0.86813 0.87181 0.89243 0.91070 0.76589 0.91285 0.86920 0.87469 0.91799 0.91801 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.53 9.96 -15.05 -0.15 -6.68 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -16.85 5.15 -53.54 -0.28 -17.12 16 10 C 0.21 3.89 3.12 -68.05 -0.21 3.68 16 11 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 12 C -0.09 -1.65 5.76 -104.20 -0.60 -2.25 16 13 C -0.09 -1.53 10.04 -39.53 -0.40 -1.92 16 14 C -0.13 -1.89 10.05 -39.62 -0.40 -2.29 16 15 C -0.13 -1.84 10.05 -39.63 -0.40 -2.24 16 16 C -0.11 -1.68 10.04 -39.54 -0.40 -2.07 16 17 C -0.10 -1.58 6.14 -104.21 -0.64 -2.22 16 18 C -0.09 -1.35 6.49 -26.83 -0.17 -1.52 16 19 C 0.14 2.25 3.03 -66.50 -0.20 2.05 16 20 H 0.11 2.14 7.45 -51.93 -0.39 1.75 16 21 N -0.71 -9.35 5.08 -52.42 -0.27 -9.62 16 22 C 0.52 7.54 7.18 -10.98 -0.08 7.46 16 23 O -0.51 -9.73 16.15 -14.26 -0.23 -9.96 16 24 C 0.04 0.43 3.25 -27.81 -0.09 0.34 16 25 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 26 C 0.04 0.36 6.30 37.23 0.23 0.59 16 27 O -0.37 -3.64 10.85 -48.80 -0.53 -4.17 16 28 C 0.02 0.15 7.05 37.23 0.26 0.42 16 29 C 0.02 0.19 7.05 37.23 0.26 0.45 16 30 O -0.35 -4.47 10.03 -62.51 -0.63 -5.09 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.39 10.04 7.78 -40.82 -0.32 9.73 16 33 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 39 H 0.40 4.18 8.58 -40.82 -0.35 3.83 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -33.54 375.57 -10.15 -43.69 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.51 Total: 12.90 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.07 Total: -6.46 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.18 Total: -53.40 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.39 Total: -19.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.54 -10.15 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960246451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.912 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds