Wall clock time and date at job start Tue Mar 31 2020 17:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99697 * 2 1 4 4 H 1.48509 * 109.47045 * 275.83498 * 3 2 1 5 5 H 1.48497 * 109.47494 * 35.83935 * 3 2 1 6 6 H 1.48508 * 109.46778 * 155.84087 * 3 2 1 7 7 C 1.38807 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99896 * 341.32930 * 7 2 1 9 9 N 1.36932 * 120.00256 * 161.33244 * 7 2 1 10 10 C 1.43468 * 118.94070 * 319.56431 * 9 7 2 11 11 C 1.53802 * 107.96182 * 273.62985 * 10 9 7 12 12 C 1.47146 * 111.83632 * 281.67151 * 11 10 9 13 13 N 1.48208 * 110.34701 * 58.29078 * 12 11 10 14 14 C 1.34780 * 119.96648 * 102.46528 * 13 12 11 15 15 O 1.21582 * 120.00218 * 353.57455 * 14 13 12 16 16 C 1.47613 * 119.99780 * 173.85352 * 14 13 12 17 17 C 1.39707 * 120.10014 * 24.76053 * 16 14 13 18 18 C 1.37722 * 119.96515 * 180.02562 * 17 16 14 19 19 C 1.39010 * 120.27325 * 359.97153 * 18 17 16 20 20 C 1.39262 * 120.04444 * 359.94949 * 19 18 17 21 21 C 1.38290 * 119.95985 * 359.83087 * 20 19 18 22 22 O 1.36141 * 120.76161 * 180.22214 * 20 19 18 23 23 C 1.43175 * 116.69053 * 342.74023 * 22 20 19 24 24 C 1.53472 * 108.21688 * 46.24088 * 23 22 20 25 25 O 1.35963 * 119.24019 * 179.80300 * 19 18 17 26 26 C 1.43614 * 120.06322 * 282.74441 * 13 12 11 27 27 C 1.48855 * 118.94445 * 139.53931 * 9 7 2 28 28 H 0.96994 * 120.00275 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.76611 * 154.01155 * 10 9 7 30 30 H 1.08997 * 109.80583 * 33.26350 * 10 9 7 31 31 H 1.09000 * 109.00852 * 161.06377 * 11 10 9 32 32 H 1.08995 * 108.94737 * 42.23086 * 11 10 9 33 33 H 1.09007 * 109.32060 * 298.02844 * 12 11 10 34 34 H 1.08999 * 109.18118 * 178.47687 * 12 11 10 35 35 H 1.07998 * 120.01590 * 0.03450 * 17 16 14 36 36 H 1.07999 * 119.85856 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.02537 * 180.20267 * 21 20 19 38 38 H 1.09001 * 109.71669 * 286.56056 * 23 22 20 39 39 H 1.08995 * 109.71359 * 165.92055 * 23 22 20 40 40 H 1.08999 * 109.70651 * 180.49135 * 24 23 22 41 41 H 1.09007 * 109.73621 * 59.89922 * 24 23 22 42 42 H 1.08997 * 108.87934 * 211.19314 * 26 13 12 43 43 H 1.09003 * 108.87312 * 329.63084 * 26 13 12 44 44 H 1.09009 * 109.48029 * 260.60565 * 27 9 7 45 45 H 1.09005 * 109.47958 * 20.63775 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3743 2.1176 -1.3929 5 1 1.5147 2.6139 0.8197 6 1 3.6040 1.4077 0.5731 7 6 2.0103 -1.2021 -0.0005 8 1 1.5129 -2.1129 0.2985 9 7 3.3256 -1.2332 -0.3801 10 6 3.7450 -0.4358 -1.4966 11 6 3.5104 -1.2533 -2.7781 12 6 4.5612 -2.2627 -2.9833 13 7 4.6248 -3.1836 -1.8238 14 6 4.0836 -4.4149 -1.9115 15 8 3.4428 -4.7286 -2.8959 16 6 4.2638 -5.3804 -0.8095 17 6 4.5120 -4.9248 0.4876 18 6 4.6802 -5.8281 1.5135 19 6 4.6036 -7.1936 1.2646 20 6 4.3548 -7.6541 -0.0259 21 6 4.1805 -6.7521 -1.0595 22 8 4.2722 -8.9880 -0.2853 23 6 4.8163 -9.8702 0.7025 24 6 4.3247 -9.4084 2.0810 25 8 4.7769 -8.0668 2.2923 26 6 5.2572 -2.7630 -0.6049 27 6 4.2744 -2.0927 0.3793 28 1 -0.4850 0.8400 -0.0004 29 1 4.8039 -0.1959 -1.4012 30 1 3.1607 0.4836 -1.5340 31 1 3.4958 -0.5772 -3.6329 32 1 2.5455 -1.7551 -2.7061 33 1 5.5231 -1.7633 -3.1005 34 1 4.3387 -2.8330 -3.8852 35 1 4.5718 -3.8648 0.6858 36 1 4.8725 -5.4740 2.5156 37 1 3.9842 -7.1080 -2.0601 38 1 5.9052 -9.8329 0.6690 39 1 4.4767 -10.8884 0.5131 40 1 4.7327 -10.0598 2.8539 41 1 3.2355 -9.4385 2.1125 42 1 5.6982 -3.6328 -0.1181 43 1 6.0509 -2.0557 -0.8454 44 1 4.8300 -1.4809 1.0902 45 1 3.7185 -2.8608 0.9171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989648106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:21 Heat of formation + Delta-G solvation = 9.058457 kcal Electronic energy + Delta-G solvation = -29818.540532 eV Core-core repulsion = 25805.216992 eV Total energy + Delta-G solvation = -4013.323540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46610 -40.29190 -37.53850 -37.42833 -37.08892 -34.55249 -33.17056 -31.58644 -31.10732 -30.77653 -28.63908 -28.18649 -25.89145 -25.00423 -23.74609 -23.56299 -21.94406 -21.39478 -20.18769 -19.32926 -18.47783 -17.80300 -17.37597 -16.70812 -16.23558 -16.11376 -15.64214 -15.35390 -15.19668 -15.01945 -14.61185 -14.53043 -13.94121 -13.89852 -13.72444 -13.39681 -13.27089 -13.06472 -12.77273 -12.73379 -12.30305 -12.10051 -11.70393 -11.58816 -11.36502 -11.30771 -10.99353 -10.84514 -10.68225 -10.58424 -10.26171 -10.12023 -9.77924 -9.60876 -9.44884 -8.71799 -8.54945 -8.22612 -8.11301 -6.79237 -5.97883 -3.45679 0.89406 1.27574 2.75859 2.95458 3.06496 3.29093 3.42905 3.44251 3.47868 3.82954 3.97029 4.46591 4.49588 4.52937 4.60717 4.69049 4.84250 4.95973 5.16176 5.18158 5.20864 5.29963 5.33828 5.37797 5.45233 5.51118 5.73057 5.75708 5.84128 5.87699 5.98788 6.04908 6.11310 6.27349 6.31486 6.36850 6.37735 6.47318 6.51666 6.70866 6.71915 6.93843 7.19364 7.25823 7.78562 8.10454 8.37956 8.52592 9.00847 9.69774 10.06012 11.17238 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003578 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.018039 B = 7824.201831 C = 8473.810294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.037 3.963 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.075 0.925 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.168 4.168 12 C 0.132 3.868 13 N -0.578 5.578 14 C 0.566 3.434 15 O -0.541 6.541 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.122 4.122 19 C 0.069 3.931 20 C 0.035 3.965 21 C -0.057 4.057 22 O -0.306 6.306 23 C 0.021 3.979 24 C 0.019 3.981 25 O -0.306 6.306 26 C 0.062 3.938 27 C 0.106 3.894 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.193 0.807 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.879 -15.168 2.499 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.718 3.282 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.400 4.400 8 H 0.093 0.907 9 N -0.322 5.322 10 C 0.026 3.974 11 C -0.209 4.209 12 C 0.011 3.989 13 N -0.309 5.309 14 C 0.355 3.645 15 O -0.420 6.420 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.141 4.141 19 C 0.023 3.977 20 C -0.010 4.010 21 C -0.076 4.076 22 O -0.221 6.221 23 C -0.055 4.055 24 C -0.056 4.056 25 O -0.220 6.220 26 C -0.063 4.063 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.209 0.791 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.415 -15.282 1.998 21.103 hybrid contribution 0.223 0.749 0.183 0.803 sum 14.638 -14.533 2.181 20.742 Atomic orbital electron populations 1.69839 1.05996 1.26669 1.51692 1.25509 0.95091 0.97850 0.97901 0.86777 0.80310 0.84367 0.76739 1.21468 1.23131 1.19539 1.18772 0.84332 0.93898 1.43005 0.90715 1.43777 1.06147 1.51510 1.30815 1.20671 0.96598 0.93568 0.86575 1.21740 1.01030 0.98450 0.99642 1.20628 0.98940 0.91167 0.88180 1.47179 1.56766 1.13125 1.13835 1.17998 0.78757 0.81646 0.86089 1.90746 1.39469 1.78553 1.33231 1.19639 1.05509 0.92854 0.94423 1.23220 0.96047 1.03924 0.91157 1.20468 1.04202 0.88711 1.00674 1.19204 1.02093 0.90749 0.85611 1.18645 1.06264 0.83757 0.92301 1.20381 0.98507 0.90272 0.98474 1.86342 1.77606 1.13077 1.45066 1.23609 0.99405 0.94520 0.87952 1.23648 1.00914 0.82457 0.98627 1.86270 1.78597 1.19971 1.37162 1.22491 0.96253 1.00618 0.86984 1.22439 0.92182 0.94329 0.92972 0.92698 0.94436 0.93291 0.92338 0.90023 0.91857 0.90103 0.79091 0.84135 0.83934 0.90563 0.86125 0.86094 0.90288 0.88576 0.90947 0.93995 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.97 55.49 0.78 -26.75 16 2 C 0.04 1.06 5.34 -17.43 -0.09 0.96 16 3 Si 0.89 21.92 24.89 -169.99 -4.23 17.69 16 4 H -0.29 -6.92 6.77 56.52 0.38 -6.54 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.27 -7.43 9.56 -15.06 -0.14 -7.58 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 N -0.60 -13.46 2.09 -172.29 -0.36 -13.82 16 10 C 0.15 3.16 4.52 -5.23 -0.02 3.14 16 11 C -0.17 -3.22 5.64 -29.13 -0.16 -3.39 16 12 C 0.13 2.17 5.66 -5.91 -0.03 2.13 16 13 N -0.58 -9.82 2.47 -178.17 -0.44 -10.26 16 14 C 0.57 10.62 7.50 -12.43 -0.09 10.52 16 15 O -0.54 -11.85 16.08 5.29 0.09 -11.76 16 16 C -0.12 -1.98 5.64 -104.98 -0.59 -2.57 16 17 C -0.13 -1.81 7.15 -39.22 -0.28 -2.09 16 18 C -0.12 -1.59 9.94 -39.48 -0.39 -1.98 16 19 C 0.07 0.92 6.51 -38.91 -0.25 0.67 16 20 C 0.03 0.49 6.48 -39.18 -0.25 0.24 16 21 C -0.06 -0.89 9.50 -39.02 -0.37 -1.26 16 22 O -0.31 -3.85 10.42 -32.94 -0.34 -4.19 16 23 C 0.02 0.16 7.26 37.40 0.27 0.44 16 24 C 0.02 0.15 7.26 37.40 0.27 0.42 16 25 O -0.31 -3.57 10.40 -32.38 -0.34 -3.91 16 26 C 0.06 0.89 4.68 -4.84 -0.02 0.87 16 27 C 0.11 1.87 6.07 -2.01 -0.01 1.85 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.04 0.67 7.58 -51.93 -0.39 0.28 16 30 H 0.05 1.14 3.09 -51.93 -0.16 0.98 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.92 7.90 -51.93 -0.41 1.51 16 33 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.08 1.36 7.20 -51.93 -0.37 0.98 16 35 H 0.19 2.68 1.51 -52.49 -0.08 2.60 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.14 2.22 7.84 -52.49 -0.41 1.81 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.18 4.52 -51.93 -0.23 0.95 16 43 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 44 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.08 1.38 5.65 -51.93 -0.29 1.08 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -34.90 344.38 -7.56 -42.46 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.71 Total: 2.97 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.19 Total: 2.39 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.03 Total: -50.84 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.59 Total: -19.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.23 Total: 17.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.90 -7.56 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989648106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.517 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds