Wall clock time and date at job start Tue Mar 31 2020 17:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48493 * 109.47095 * 269.99885 * 3 2 1 5 5 H 1.48503 * 109.47003 * 29.99646 * 3 2 1 6 6 H 1.48492 * 109.47437 * 149.99333 * 3 2 1 7 7 C 1.38810 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99982 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.46511 * 119.99793 * 180.02562 * 9 7 2 11 11 C 1.53046 * 109.45818 * 155.00047 * 10 9 7 12 12 C 1.53188 * 109.30750 * 181.38664 * 11 10 9 13 13 N 1.46923 * 108.77537 * 305.35939 * 12 11 10 14 14 C 1.34780 * 120.63131 * 233.58798 * 13 12 11 15 15 O 1.21585 * 119.99824 * 5.85136 * 14 13 12 16 16 C 1.47604 * 120.00143 * 185.84580 * 14 13 12 17 17 C 1.39713 * 120.09841 * 41.79191 * 16 14 13 18 18 C 1.37716 * 119.96264 * 180.29993 * 17 16 14 19 19 C 1.39011 * 120.27313 * 359.76817 * 18 17 16 20 20 C 1.39260 * 120.04674 * 359.87530 * 19 18 17 21 21 C 1.38290 * 119.95694 * 0.17657 * 20 19 18 22 22 O 1.36147 * 120.75747 * 180.40652 * 20 19 18 23 23 C 1.43178 * 116.70664 * 342.78773 * 22 20 19 24 24 C 1.53465 * 108.23484 * 46.16235 * 23 22 20 25 25 O 1.35967 * 119.23600 * 179.83270 * 19 18 17 26 26 C 1.46925 * 118.73852 * 53.86592 * 13 12 11 27 27 C 1.53041 * 109.45777 * 275.06605 * 10 9 7 28 28 H 0.96998 * 120.00311 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00578 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.45828 * 35.02637 * 10 9 7 31 31 H 1.08993 * 109.49716 * 61.43067 * 11 10 9 32 32 H 1.09004 * 109.49093 * 301.33191 * 11 10 9 33 33 H 1.09007 * 109.58249 * 185.57404 * 12 11 10 34 34 H 1.08993 * 109.70997 * 65.22125 * 12 11 10 35 35 H 1.08001 * 120.01209 * 0.07691 * 17 16 14 36 36 H 1.08003 * 119.86099 * 179.74000 * 18 17 16 37 37 H 1.07997 * 120.02005 * 179.84560 * 21 20 19 38 38 H 1.08993 * 109.72017 * 286.47365 * 23 22 20 39 39 H 1.09000 * 109.73863 * 165.86500 * 23 22 20 40 40 H 1.08998 * 109.71357 * 180.50379 * 24 23 22 41 41 H 1.09004 * 109.74154 * 59.90112 * 24 23 22 42 42 H 1.08995 * 109.58672 * 65.92498 * 26 13 12 43 43 H 1.09004 * 109.58589 * 186.34907 * 26 13 12 44 44 H 1.09003 * 109.49459 * 298.56484 * 27 10 9 45 45 H 1.08998 * 109.49719 * 58.66238 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.5000 -2.2582 -0.6082 12 6 6.2499 -3.5937 -0.6383 13 7 6.2665 -4.1574 0.7184 14 6 7.4285 -4.5191 1.2976 15 8 8.4840 -4.2829 0.7422 16 6 7.4197 -5.2018 2.6063 17 6 6.4789 -6.2006 2.8691 18 6 6.4693 -6.8315 4.0933 19 6 7.3958 -6.4822 5.0689 20 6 8.3410 -5.4926 4.8106 21 6 8.3551 -4.8547 3.5837 22 8 9.2603 -5.1449 5.7527 23 6 8.9834 -5.5432 7.0998 24 6 8.5385 -7.0118 7.0846 25 8 7.3651 -7.1163 6.2713 26 6 4.9917 -4.3251 1.4293 27 6 4.2562 -2.9763 1.4384 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 0.0007 30 1 3.5652 -3.2059 -0.5892 31 1 6.0566 -1.5418 -0.0042 32 1 5.3967 -1.8760 -1.6238 33 1 7.2726 -3.4308 -0.9788 34 1 5.7452 -4.2836 -1.3145 35 1 5.7573 -6.4753 2.1140 36 1 5.7385 -7.6005 4.2962 37 1 9.0860 -4.0853 3.3832 38 1 8.1874 -4.9222 7.5106 39 1 9.8824 -5.4376 7.7070 40 1 8.3124 -7.3381 8.0997 41 1 9.3315 -7.6324 6.6671 42 1 4.3841 -5.0722 0.9188 43 1 5.1837 -4.6450 2.4535 44 1 4.8247 -2.2531 2.0231 45 1 3.2678 -3.1052 1.8795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997291716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:53 Heat of formation + Delta-G solvation = -55.618420 kcal Electronic energy + Delta-G solvation = -28472.286889 eV Core-core repulsion = 24456.158749 eV Total energy + Delta-G solvation = -4016.128140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66047 -40.29828 -37.89918 -37.64826 -37.19177 -34.66351 -32.36614 -31.66186 -31.09600 -30.75208 -29.83616 -28.78744 -25.76478 -24.85855 -23.65053 -22.94260 -22.44668 -21.53101 -20.42592 -19.57341 -18.70664 -18.06048 -17.63801 -17.46997 -16.49995 -16.04685 -15.70552 -15.35519 -15.14953 -14.88589 -14.78691 -14.35912 -14.27919 -14.18751 -14.01381 -13.60046 -13.49672 -13.36436 -12.98601 -12.74498 -12.50567 -12.19699 -12.11086 -11.84908 -11.50493 -11.45487 -11.05115 -10.98727 -10.91750 -10.87264 -10.56927 -10.26115 -9.91671 -9.86659 -9.60904 -9.01942 -8.94376 -8.60114 -8.36873 -7.30071 -5.79691 -3.15428 0.63238 0.97509 2.54294 2.58771 2.78755 3.09056 3.36592 3.40080 3.44426 3.46339 3.76659 4.21513 4.34618 4.37865 4.47156 4.57267 4.71680 4.81151 4.95174 4.99224 5.04423 5.08961 5.10424 5.23238 5.31832 5.45882 5.47299 5.56160 5.62121 5.70459 5.77807 5.83362 5.92379 6.00865 6.08570 6.13489 6.15744 6.29232 6.37166 6.47338 6.54474 6.78842 6.93011 7.00442 7.41268 7.95855 8.12682 8.39489 9.17735 9.90673 10.10486 11.38522 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002695 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.753757 B =10388.023691 C =10963.149017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.117 3.883 13 N -0.599 5.599 14 C 0.563 3.437 15 O -0.542 6.542 16 C -0.121 4.121 17 C -0.081 4.081 18 C -0.119 4.119 19 C 0.070 3.930 20 C 0.043 3.957 21 C -0.059 4.059 22 O -0.305 6.305 23 C 0.020 3.980 24 C 0.020 3.980 25 O -0.304 6.304 26 C 0.097 3.903 27 C -0.151 4.151 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.969 -16.356 12.805 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.331 5.331 14 C 0.352 3.648 15 O -0.420 6.420 16 C -0.124 4.124 17 C -0.099 4.099 18 C -0.137 4.137 19 C 0.024 3.976 20 C -0.002 4.002 21 C -0.079 4.079 22 O -0.220 6.220 23 C -0.056 4.056 24 C -0.056 4.056 25 O -0.219 6.219 26 C -0.026 4.026 27 C -0.192 4.192 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.270 -16.276 12.543 27.496 hybrid contribution 0.487 1.281 0.429 1.436 sum 18.757 -14.995 12.971 27.293 Atomic orbital electron populations 1.69697 1.05104 1.25857 1.57475 1.24671 0.95219 0.97221 1.01992 0.86560 0.79211 0.85013 0.77796 1.21077 1.21791 1.20352 1.19061 0.80535 0.94673 1.43074 0.89154 1.42808 1.04018 1.02002 1.90207 1.20157 0.90200 0.89404 0.92891 1.22246 0.97195 0.96494 1.02243 1.21631 1.02148 0.94779 0.81989 1.48067 1.06516 1.61634 1.16923 1.18105 0.83667 0.78492 0.84577 1.90776 1.30577 1.55851 1.64830 1.19587 0.97973 1.00017 0.94861 1.21178 0.97224 0.94958 0.96562 1.20360 1.00047 1.02154 0.91188 1.19126 0.98000 0.93313 0.87120 1.18672 0.93619 0.96613 0.91310 1.20353 0.98289 0.99244 0.89976 1.86353 1.43534 1.75835 1.16239 1.23656 1.04166 0.95366 0.82418 1.23671 0.87913 0.97105 0.96890 1.86289 1.38473 1.70253 1.26837 1.22296 0.83726 0.99276 0.97272 1.22720 1.00491 0.94734 1.01234 0.93050 0.80642 0.92447 0.91879 0.90385 0.89157 0.91112 0.83891 0.83970 0.83933 0.90233 0.85896 0.85867 0.90276 0.90998 0.89436 0.92260 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.75 -17.10 4.93 -53.38 -0.26 -17.37 16 10 C 0.18 3.29 2.73 -67.88 -0.19 3.11 16 11 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 12 C 0.12 1.57 6.44 -3.71 -0.02 1.55 16 13 N -0.60 -8.09 2.97 -173.71 -0.52 -8.60 16 14 C 0.56 8.21 7.29 -12.44 -0.09 8.12 16 15 O -0.54 -9.52 16.36 5.29 0.09 -9.43 16 16 C -0.12 -1.51 5.07 -104.99 -0.53 -2.04 16 17 C -0.08 -0.82 7.38 -39.22 -0.29 -1.11 16 18 C -0.12 -1.15 9.94 -39.49 -0.39 -1.54 16 19 C 0.07 0.75 6.50 -38.92 -0.25 0.49 16 20 C 0.04 0.49 6.49 -39.18 -0.25 0.24 16 21 C -0.06 -0.74 9.56 -39.03 -0.37 -1.11 16 22 O -0.30 -3.19 10.42 -32.96 -0.34 -3.54 16 23 C 0.02 0.12 7.26 37.40 0.27 0.39 16 24 C 0.02 0.11 7.26 37.40 0.27 0.39 16 25 O -0.30 -2.87 10.41 -32.39 -0.34 -3.21 16 26 C 0.10 1.21 4.96 -3.49 -0.02 1.19 16 27 C -0.15 -2.42 5.67 -26.39 -0.15 -2.57 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.36 8.27 5.66 -40.82 -0.23 8.03 16 30 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.25 7.00 -51.92 -0.36 0.89 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.14 1.20 6.73 -52.49 -0.35 0.85 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 43 H 0.09 0.98 4.80 -51.93 -0.25 0.73 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -34.44 361.68 -8.56 -43.00 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.28 Total: 6.56 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.42 Total: -2.00 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.00 Total: -54.10 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.59 Total: -16.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.44 -8.56 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997291716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.614 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds